RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 COPS6Q7L5N1 327 aa11.71□□□□□ -0.53
HDAC3-211ENST00000491581 XAGE3Q8WTP9 111 aa11.71□□□□□ -0.53
HDAC3-211ENST00000491581 CHPF2Q9P2E5 772 aa11.71□□□□□ -0.53
HDAC3-211ENST00000491581 ERVV-1B6SEH8 477 aa11.7□□□□□ -0.54
HDAC3-211ENST00000491581 APLP1P51693 650 aa11.7□□□□□ -0.54
HDAC3-211ENST00000491581 WDR43Q15061 677 aaKnown RBP eCLIP11.7□□□□□ -0.54
HDAC3-211ENST00000491581 RUNDC1Q96C34 613 aa11.7□□□□□ -0.54
HDAC3-211ENST00000491581 LTBP3Q9NS15 1303 aa11.69□□□□□ -0.54
HDAC3-211ENST00000491581 ELL2O00472 640 aaPredicted RBP11.69□□□□□ -0.54
HDAC3-211ENST00000491581 CHL1O00533 1208 aa11.69□□□□□ -0.54
HDAC3-211ENST00000491581 HCLS1P14317 486 aaPredicted RBP11.69□□□□□ -0.54
HDAC3-211ENST00000491581 VEGFAP15692 232 aaPredicted RBP11.69□□□□□ -0.54
HDAC3-211ENST00000491581 CCDC93Q567U6 631 aa11.69□□□□□ -0.54
HDAC3-211ENST00000491581 RTL5Q5HYW3 569 aaPredicted RBP11.69□□□□□ -0.54
HDAC3-211ENST00000491581 GIGYF2Q6Y7W6 1299 aaKnown RBP11.69□□□□□ -0.54
HDAC3-211ENST00000491581 APAF1O14727 1248 aa11.68□□□□□ -0.54
HDAC3-211ENST00000491581 FKBP4Q02790 459 aaKnown RBP eCLIP11.68□□□□□ -0.54
HDAC3-211ENST00000491581 CRY2Q49AN0 593 aa11.68□□□□□ -0.54
HDAC3-211ENST00000491581 PNNQ9H307 717 aaKnown RBP11.68□□□□□ -0.54
HDAC3-211ENST00000491581 ADAMTSL1Q8N6G6 1762 aa11.67□□□□□ -0.54
HDAC3-211ENST00000491581 RNF123Q5XPI4 1314 aa11.67□□□□□ -0.54
HDAC3-211ENST00000491581 ATP5J2-PTCD1G3V325 749 aa11.67□□□□□ -0.54
HDAC3-211ENST00000491581 FMR1Q06787 632 aaKnown RBP eCLIP11.67□□□□□ -0.54
HDAC3-211ENST00000491581 FSTL1Q12841 308 aa11.67□□□□□ -0.54
HDAC3-211ENST00000491581 SMC1BQ8NDV3 1235 aa11.67□□□□□ -0.54
HDAC3-211ENST00000491581 JARID2Q92833 1246 aaPredicted RBP11.67□□□□□ -0.54
HDAC3-211ENST00000491581 MBIPQ9NS73 344 aa11.67□□□□□ -0.54
HDAC3-211ENST00000491581 PDZRN3Q9UPQ7 1066 aa11.67□□□□□ -0.54
HDAC3-211ENST00000491581 ZC3H4Q9UPT8 1303 aaKnown RBP11.66□□□□□ -0.54
HDAC3-211ENST00000491581 SCN4AP35499 1836 aa11.66□□□□□ -0.54
HDAC3-211ENST00000491581 IARSP41252 1262 aaKnown RBP11.66□□□□□ -0.54
HDAC3-211ENST00000491581 NLRP10Q86W26 655 aa11.66□□□□□ -0.54
HDAC3-211ENST00000491581 RPGRQ92834 1020 aaKnown RBP11.66□□□□□ -0.54
HDAC3-211ENST00000491581 NYXQ9GZU5 481 aa11.66□□□□□ -0.54
HDAC3-211ENST00000491581 RIC1Q4ADV7 1423 aa11.66□□□□□ -0.54
HDAC3-211ENST00000491581 ABCC4O15439 1325 aa11.65□□□□□ -0.54
HDAC3-211ENST00000491581 PPEF1O14829 653 aaPredicted RBP11.65□□□□□ -0.54
HDAC3-211ENST00000491581 EAPPQ56P03 285 aaPredicted RBP11.65□□□□□ -0.54
HDAC3-211ENST00000491581 HDGFL1Q5TGJ6 251 aa11.65□□□□□ -0.54
HDAC3-211ENST00000491581 DUSP27Q5VZP5 1158 aa11.65□□□□□ -0.54
HDAC3-211ENST00000491581 DPY19L2Q6NUT2 758 aa11.65□□□□□ -0.54
HDAC3-211ENST00000491581 KLRG1Q96E93 195 aa11.65□□□□□ -0.54
HDAC3-211ENST00000491581 PHAXQ9H814 394 aaKnown RBP11.65□□□□□ -0.54
HDAC3-211ENST00000491581 DUOX1Q9NRD9 1551 aa11.65□□□□□ -0.54
HDAC3-211ENST00000491581 SPEF2Q9C093 1822 aa11.65□□□□□ -0.55
HDAC3-211ENST00000491581 ERBB4Q15303 1308 aa11.64□□□□□ -0.55
HDAC3-211ENST00000491581 ALDH1B1P30837 517 aa11.64□□□□□ -0.55
HDAC3-211ENST00000491581 HOXA10P31260 410 aaPredicted RBP11.64□□□□□ -0.55
HDAC3-211ENST00000491581 LMOD3Q0VAK6 560 aa11.64□□□□□ -0.55
HDAC3-211ENST00000491581 TSPYL6Q8N831 410 aa11.64□□□□□ -0.55
HDAC3-211ENST00000491581 C8orf58Q8NAV2 365 aa11.64□□□□□ -0.55
HDAC3-211ENST00000491581 UTP14AQ9BVJ6 771 aaKnown RBP11.64□□□□□ -0.55
HDAC3-211ENST00000491581 TAF1DQ9H5J8 278 aaPredicted RBP11.64□□□□□ -0.55
HDAC3-211ENST00000491581 DDX21Q9NR30 783 aaKnown RBP eCLIP11.64□□□□□ -0.55
HDAC3-211ENST00000491581 GJA3Q9Y6H8 435 aa11.64□□□□□ -0.55
HDAC3-211ENST00000491581 IBTKQ9P2D0 1353 aaPredicted RBP11.64□□□□□ -0.55
HDAC3-211ENST00000491581 RGL2O15211 777 aa11.63□□□□□ -0.55
HDAC3-211ENST00000491581 ZNF853P0CG23 659 aa11.63□□□□□ -0.55
HDAC3-211ENST00000491581 TCIRG1Q13488 830 aa11.63□□□□□ -0.55
HDAC3-211ENST00000491581 AOC3Q16853 763 aa11.63□□□□□ -0.55
HDAC3-211ENST00000491581 NCBP3Q53F19 620 aaKnown RBP11.63□□□□□ -0.55
HDAC3-211ENST00000491581 TSR2Q969E8 191 aaKnown RBP11.63□□□□□ -0.55
HDAC3-211ENST00000491581 FAM89AQ96GI7 184 aa11.63□□□□□ -0.55
HDAC3-211ENST00000491581 GPR101Q96P66 508 aaPredicted RBP11.63□□□□□ -0.55
HDAC3-211ENST00000491581 MKRN1Q9UHC7 482 aaKnown RBP11.63□□□□□ -0.55
HDAC3-211ENST00000491581 TRMT112Q9UI30 125 aaKnown RBP11.63□□□□□ -0.55
HDAC3-211ENST00000491581 LRRC37AA6NMS7 1700 aa11.63□□□□□ -0.55
HDAC3-211ENST00000491581 SHTN1A0MZ66 631 aa11.62□□□□□ -0.55
HDAC3-211ENST00000491581 FZD9O00144 591 aa11.62□□□□□ -0.55
HDAC3-211ENST00000491581 SOGA3Q5TF21 947 aa11.62□□□□□ -0.55
HDAC3-211ENST00000491581 MAP1SQ66K74 1059 aaPredicted RBP11.62□□□□□ -0.55
HDAC3-211ENST00000491581 CHADLQ6NUI6 762 aa11.62□□□□□ -0.55
HDAC3-211ENST00000491581 PPP1R42Q7Z4L9 355 aa11.62□□□□□ -0.55
HDAC3-211ENST00000491581 RTKN2Q8IZC4 609 aa11.62□□□□□ -0.55
HDAC3-211ENST00000491581 RBM17Q96I25 401 aaKnown RBP11.62□□□□□ -0.55
HDAC3-211ENST00000491581 SALL2Q9Y467 1007 aaPredicted RBP11.62□□□□□ -0.55
HDAC3-211ENST00000491581 EPS15P42566 896 aa11.61□□□□□ -0.55
HDAC3-211ENST00000491581 SLC10A5Q5PT55 438 aa11.61□□□□□ -0.55
HDAC3-211ENST00000491581 COL13A1Q5TAT6 717 aaPredicted RBP11.61□□□□□ -0.55
HDAC3-211ENST00000491581 CELF1Q92879 486 aaKnown RBP11.61□□□□□ -0.55
HDAC3-211ENST00000491581 CFAP44Q96MT7 982 aa11.61□□□□□ -0.55
HDAC3-211ENST00000491581 NLRP3Q96P20 1036 aa11.61□□□□□ -0.55
HDAC3-211ENST00000491581 CCDC85AQ96PX6 553 aaPredicted RBP11.61□□□□□ -0.55
HDAC3-211ENST00000491581 CRAMP1Q96RY5 1269 aa11.61□□□□□ -0.55
HDAC3-211ENST00000491581 BABAM1Q9NWV8 329 aa11.61□□□□□ -0.55
HDAC3-211ENST00000491581 DSG3P32926 999 aa11.6□□□□□ -0.55
HDAC3-211ENST00000491581 EPHX2P34913 555 aa11.6□□□□□ -0.55
HDAC3-211ENST00000491581 SCNN1DP51172 638 aa11.6□□□□□ -0.55
HDAC3-211ENST00000491581 PARP10Q53GL7 1025 aa11.6□□□□□ -0.55
HDAC3-211ENST00000491581 DLK2Q6UY11 383 aa11.6□□□□□ -0.55
HDAC3-211ENST00000491581 ANKRD13DQ6ZTN6 518 aa11.6□□□□□ -0.55
HDAC3-211ENST00000491581 LARGE2Q8N3Y3 721 aa11.6□□□□□ -0.55
HDAC3-211ENST00000491581 JMYQ8N9B5 988 aa11.6□□□□□ -0.55
HDAC3-211ENST00000491581 L3MBTL3Q96JM7 780 aaPredicted RBP11.6□□□□□ -0.55
HDAC3-211ENST00000491581 PSMD1Q99460 953 aa11.6□□□□□ -0.55
HDAC3-211ENST00000491581 ISCA1Q9BUE6 129 aa11.6□□□□□ -0.55
HDAC3-211ENST00000491581 CLEC11AQ9Y240 323 aa11.6□□□□□ -0.55
HDAC3-211ENST00000491581 PCNTO95613 3336 aa11.59□□□□□ -0.55
HDAC3-211ENST00000491581 WTIPA6NIX2 430 aaPredicted RBP11.59□□□□□ -0.55
HDAC3-211ENST00000491581 PPIP5K2O43314 1243 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms