RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 KCNH4Q9UQ05 1017 aa8.78□□□□□ -1
HMGB1P38-201ENST00000490557 CD33P20138 364 aa8.77□□□□□ -1.01
HMGB1P38-201ENST00000490557 INPP5BP32019 993 aa8.77□□□□□ -1.01
HMGB1P38-201ENST00000490557 COL25A1Q9BXS0 654 aaPredicted RBP8.77□□□□□ -1.01
HMGB1P38-201ENST00000490557 NDFIP2Q9NV92 336 aa8.77□□□□□ -1.01
HMGB1P38-201ENST00000490557 DMGDHQ9UI17 866 aaKnown RBP8.77□□□□□ -1.01
HMGB1P38-201ENST00000490557 ERBB4Q15303 1308 aa8.77□□□□□ -1.01
HMGB1P38-201ENST00000490557 ZBTB39O15060 712 aa8.76□□□□□ -1.01
HMGB1P38-201ENST00000490557 EFSO43281 561 aa8.76□□□□□ -1.01
HMGB1P38-201ENST00000490557 BMP4P12644 408 aa8.76□□□□□ -1.01
HMGB1P38-201ENST00000490557 DNM1Q05193 864 aaKnown RBP8.76□□□□□ -1.01
HMGB1P38-201ENST00000490557 NEUROD1Q13562 356 aa8.76□□□□□ -1.01
HMGB1P38-201ENST00000490557 ATCAYQ86WG3 371 aa8.76□□□□□ -1.01
HMGB1P38-201ENST00000490557 CMTR1Q8N1G2 835 aaKnown RBP8.76□□□□□ -1.01
HMGB1P38-201ENST00000490557 GPR161Q8N6U8 529 aaKnown RBP8.76□□□□□ -1.01
HMGB1P38-201ENST00000490557 GPR152Q8TDT2 470 aa8.76□□□□□ -1.01
HMGB1P38-201ENST00000490557 PRR12Q9ULL5 1215 aa8.76□□□□□ -1.01
HMGB1P38-201ENST00000490557 NPR3P17342 541 aa8.75□□□□□ -1.01
HMGB1P38-201ENST00000490557 SFSWAPQ12872 951 aaKnown RBP8.75□□□□□ -1.01
HMGB1P38-201ENST00000490557 FAM26DQ5JW98 314 aa8.75□□□□□ -1.01
HMGB1P38-201ENST00000490557 PNMA5Q96PV4 448 aa8.75□□□□□ -1.01
HMGB1P38-201ENST00000490557 GZF1Q9H116 711 aaPredicted RBP8.75□□□□□ -1.01
HMGB1P38-201ENST00000490557 MBIPQ9NS73 344 aa8.75□□□□□ -1.01
HMGB1P38-201ENST00000490557 BRPF3Q9ULD4 1205 aa8.75□□□□□ -1.01
HMGB1P38-201ENST00000490557 FNDC3AQ9Y2H6 1198 aaKnown RBP8.75□□□□□ -1.01
HMGB1P38-201ENST00000490557 RTCBQ9Y3I0 505 aaKnown RBP8.75□□□□□ -1.01
HMGB1P38-201ENST00000490557 OPLAHO14841 1288 aa8.74□□□□□ -1.01
HMGB1P38-201ENST00000490557 NDUFB5O43674 189 aa8.74□□□□□ -1.01
HMGB1P38-201ENST00000490557 RPLP1P05386 114 aaKnown RBP8.74□□□□□ -1.01
HMGB1P38-201ENST00000490557 KCNQ4P56696 695 aa8.74□□□□□ -1.01
HMGB1P38-201ENST00000490557 TREML4Q6UXN2 200 aa8.74□□□□□ -1.01
HMGB1P38-201ENST00000490557 EDEM1Q92611 657 aa8.74□□□□□ -1.01
HMGB1P38-201ENST00000490557 USP20Q9Y2K6 914 aa8.74□□□□□ -1.01
HMGB1P38-201ENST00000490557 CNTNAP3BQ96NU0 1288 aa8.73□□□□□ -1.01
HMGB1P38-201ENST00000490557 CNTNAP3Q9BZ76 1288 aa8.73□□□□□ -1.01
HMGB1P38-201ENST00000490557 STRN4Q9NRL3 753 aa8.73□□□□□ -1.01
HMGB1P38-201ENST00000490557 UBAP1LF5GYI3 381 aa8.72□□□□□ -1.01
HMGB1P38-201ENST00000490557 MZF1P28698 734 aaPredicted RBP8.72□□□□□ -1.01
HMGB1P38-201ENST00000490557 USP5P45974 858 aa8.72□□□□□ -1.01
HMGB1P38-201ENST00000490557 MAP2K3P46734 347 aa8.72□□□□□ -1.01
HMGB1P38-201ENST00000490557 CTBSQ01459 385 aa8.72□□□□□ -1.01
HMGB1P38-201ENST00000490557 SPEM2Q0P670 501 aa8.72□□□□□ -1.01
HMGB1P38-201ENST00000490557 GAS6Q14393 721 aa8.72□□□□□ -1.01
HMGB1P38-201ENST00000490557 FAM182BQ5T319 152 aa8.72□□□□□ -1.01
HMGB1P38-201ENST00000490557 TMC1Q8TDI8 760 aa8.72□□□□□ -1.01
HMGB1P38-201ENST00000490557 NUDT16Q96DE0 195 aaKnown RBP8.72□□□□□ -1.01
HMGB1P38-201ENST00000490557 XYLBO75191 536 aa8.71□□□□□ -1.02
HMGB1P38-201ENST00000490557 GMPRP36959 345 aa8.71□□□□□ -1.02
HMGB1P38-201ENST00000490557 CCINQ13939 588 aa8.71□□□□□ -1.02
HMGB1P38-201ENST00000490557 C8orf34Q49A92 452 aa8.71□□□□□ -1.02
HMGB1P38-201ENST00000490557 SND1Q7KZF4 910 aaKnown RBP eCLIP8.71□□□□□ -1.02
HMGB1P38-201ENST00000490557 POLIQ9UNA4 740 aa8.71□□□□□ -1.02
HMGB1P38-201ENST00000490557 PDGFAP04085 211 aa8.7□□□□□ -1.02
HMGB1P38-201ENST00000490557 ARHGAP4P98171 946 aa8.7□□□□□ -1.02
HMGB1P38-201ENST00000490557 RNFT1Q5M7Z0 435 aa8.7□□□□□ -1.02
HMGB1P38-201ENST00000490557 KRT25Q7Z3Z0 450 aa8.7□□□□□ -1.02
HMGB1P38-201ENST00000490557 BHMTQ93088 406 aa8.7□□□□□ -1.02
HMGB1P38-201ENST00000490557 C11orf16Q9NQ32 467 aa8.7□□□□□ -1.02
HMGB1P38-201ENST00000490557 IGF1RP08069 1367 aa8.7□□□□□ -1.02
HMGB1P38-201ENST00000490557 FZD6O60353 706 aa8.69□□□□□ -1.02
HMGB1P38-201ENST00000490557 MAPK1P28482 360 aa8.69□□□□□ -1.02
HMGB1P38-201ENST00000490557 SRSF11Q05519 484 aaKnown RBP8.69□□□□□ -1.02
HMGB1P38-201ENST00000490557 RAB44Q7Z6P3 723 aaPredicted RBP8.69□□□□□ -1.02
HMGB1P38-201ENST00000490557 EFCC1Q9HA90 598 aa8.69□□□□□ -1.02
HMGB1P38-201ENST00000490557 CCDC87Q9NVE4 849 aa8.69□□□□□ -1.02
HMGB1P38-201ENST00000490557 EHHADHQ08426 723 aa8.68□□□□□ -1.02
HMGB1P38-201ENST00000490557 TRIM26Q12899 539 aaPredicted RBP8.68□□□□□ -1.02
HMGB1P38-201ENST00000490557 ZNF438Q7Z4V0 828 aa8.68□□□□□ -1.02
HMGB1P38-201ENST00000490557 SLC30A3Q99726 388 aa8.68□□□□□ -1.02
HMGB1P38-201ENST00000490557 GSX2Q9BZM3 304 aa8.68□□□□□ -1.02
HMGB1P38-201ENST00000490557 DCTN4Q9UJW0 460 aa8.68□□□□□ -1.02
HMGB1P38-201ENST00000490557 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.68□□□□□ -1.02
HMGB1P38-201ENST00000490557 SASH3O75995 380 aa8.67□□□□□ -1.02
HMGB1P38-201ENST00000490557 RARAP10276 462 aa8.67□□□□□ -1.02
HMGB1P38-201ENST00000490557 NFKB1P19838 968 aa8.67□□□□□ -1.02
HMGB1P38-201ENST00000490557 PDE3BQ13370 1112 aa8.67□□□□□ -1.02
HMGB1P38-201ENST00000490557 GRIN2CQ14957 1233 aa8.67□□□□□ -1.02
HMGB1P38-201ENST00000490557 ZNF468Q5VIY5 522 aaPredicted RBP8.67□□□□□ -1.02
HMGB1P38-201ENST00000490557 KCNMB2Q9Y691 235 aa8.67□□□□□ -1.02
HMGB1P38-201ENST00000490557 C2CD2LO14523 706 aa8.66□□□□□ -1.02
HMGB1P38-201ENST00000490557 ADAMTS2O95450 1211 aa8.66□□□□□ -1.02
HMGB1P38-201ENST00000490557 ARAFP10398 606 aa8.66□□□□□ -1.02
HMGB1P38-201ENST00000490557 ADH6P28332 368 aa8.66□□□□□ -1.02
HMGB1P38-201ENST00000490557 MARSP56192 900 aaKnown RBP8.66□□□□□ -1.02
HMGB1P38-201ENST00000490557 TBC1D8BQ0IIM8 1120 aa8.66□□□□□ -1.02
HMGB1P38-201ENST00000490557 TRIP4Q15650 581 aaPredicted RBP8.66□□□□□ -1.02
HMGB1P38-201ENST00000490557 ECM1Q16610 540 aa8.66□□□□□ -1.02
HMGB1P38-201ENST00000490557 TTC39BQ5VTQ0 682 aaPredicted RBP8.66□□□□□ -1.02
HMGB1P38-201ENST00000490557 SYT9Q86SS6 491 aa8.66□□□□□ -1.02
HMGB1P38-201ENST00000490557 NLRP13Q86W25 1043 aa8.66□□□□□ -1.02
HMGB1P38-201ENST00000490557 CITED4Q96RK1 184 aa8.66□□□□□ -1.02
HMGB1P38-201ENST00000490557 OXCT2Q9BYC2 517 aaPredicted RBP8.66□□□□□ -1.02
HMGB1P38-201ENST00000490557 IGFLR1Q9H665 355 aa8.66□□□□□ -1.02
HMGB1P38-201ENST00000490557 AVENQ9NQS1 362 aaPredicted RBP8.66□□□□□ -1.02
HMGB1P38-201ENST00000490557 HCN2Q9UL51 889 aa8.66□□□□□ -1.02
HMGB1P38-201ENST00000490557 EGFRP00533 1210 aa8.65□□□□□ -1.02
HMGB1P38-201ENST00000490557 GRNP28799 593 aaKnown RBP8.65□□□□□ -1.02
HMGB1P38-201ENST00000490557 PCBP4P57723 403 aaKnown RBP8.65□□□□□ -1.02
HMGB1P38-201ENST00000490557 KRT76Q01546 638 aa8.65□□□□□ -1.02
HMGB1P38-201ENST00000490557 CCDC27Q2M243 656 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms