RNA–Protein interactions for RNA: ENST00000490475.1

TTC28-207, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 5

Gene TTC28, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-207ENST00000490475 RUNDC1Q96C34 613 aa13.51□□□□□ -0.25
TTC28-207ENST00000490475 NLRP3Q96P20 1036 aa13.51□□□□□ -0.25
TTC28-207ENST00000490475 ZBTB3Q9H5J0 574 aa13.51□□□□□ -0.25
TTC28-207ENST00000490475 HOXB7P09629 217 aa13.5□□□□□ -0.25
TTC28-207ENST00000490475 EIF2S2P20042 333 aaKnown RBP13.5□□□□□ -0.25
TTC28-207ENST00000490475 IARSP41252 1262 aaKnown RBP13.5□□□□□ -0.25
TTC28-207ENST00000490475 PNMA8AQ86V59 439 aaPredicted RBP13.5□□□□□ -0.25
TTC28-207ENST00000490475 LDHDQ86WU2 507 aa13.5□□□□□ -0.25
TTC28-207ENST00000490475 NUTM1Q86Y26 1132 aa13.5□□□□□ -0.25
TTC28-207ENST00000490475 CHMP4AQ9BY43 222 aa13.5□□□□□ -0.25
TTC28-207ENST00000490475 VPS33BQ9H267 617 aa13.5□□□□□ -0.25
TTC28-207ENST00000490475 GPTP24298 496 aa13.49□□□□□ -0.25
TTC28-207ENST00000490475 SUSD4Q5VX71 490 aa13.49□□□□□ -0.25
TTC28-207ENST00000490475 GPC2Q8N158 579 aa13.49□□□□□ -0.25
TTC28-207ENST00000490475 SYNE4Q8N205 404 aa13.49□□□□□ -0.25
TTC28-207ENST00000490475 UTP14AQ9BVJ6 771 aaKnown RBP13.49□□□□□ -0.25
TTC28-207ENST00000490475 ZNF277Q9NRM2 450 aaPredicted RBP13.49□□□□□ -0.25
TTC28-207ENST00000490475 CREBZFQ9NS37 354 aa13.49□□□□□ -0.25
TTC28-207ENST00000490475 ABCC12Q96J65 1359 aa13.48□□□□□ -0.25
TTC28-207ENST00000490475 UBN2Q6ZU65 1347 aa13.48□□□□□ -0.25
TTC28-207ENST00000490475 FZD9O00144 591 aa13.48□□□□□ -0.25
TTC28-207ENST00000490475 CHL1O00533 1208 aa13.48□□□□□ -0.25
TTC28-207ENST00000490475 NTSR2O95665 410 aa13.48□□□□□ -0.25
TTC28-207ENST00000490475 EIF6P56537 245 aaKnown RBP13.48□□□□□ -0.25
TTC28-207ENST00000490475 CALD1Q05682 793 aaKnown RBP13.48□□□□□ -0.25
TTC28-207ENST00000490475 NEUROD2Q15784 382 aa13.48□□□□□ -0.25
TTC28-207ENST00000490475 SLC10A5Q5PT55 438 aa13.48□□□□□ -0.25
TTC28-207ENST00000490475 MRS2Q9HD23 443 aa13.48□□□□□ -0.25
TTC28-207ENST00000490475 DDX21Q9NR30 783 aaKnown RBP eCLIP13.48□□□□□ -0.25
TTC28-207ENST00000490475 HACL1Q9UJ83 578 aa13.48□□□□□ -0.25
TTC28-207ENST00000490475 PDIA6Q15084 440 aa13.47□□□□□ -0.25
TTC28-207ENST00000490475 SUPT20HQ8NEM7 779 aa13.47□□□□□ -0.25
TTC28-207ENST00000490475 TAF1DQ9H5J8 278 aaPredicted RBP13.47□□□□□ -0.25
TTC28-207ENST00000490475 ANKRD36CQ5JPF3 1778 aa13.46□□□□□ -0.25
TTC28-207ENST00000490475 PPEF1O14829 653 aaPredicted RBP13.46□□□□□ -0.25
TTC28-207ENST00000490475 BBOX1O75936 387 aa13.46□□□□□ -0.25
TTC28-207ENST00000490475 LMOD1P29536 600 aaPredicted RBP13.46□□□□□ -0.25
TTC28-207ENST00000490475 HTRA3P83110 453 aa13.46□□□□□ -0.25
TTC28-207ENST00000490475 COPS6Q7L5N1 327 aa13.46□□□□□ -0.25
TTC28-207ENST00000490475 TMC4Q7Z404 712 aa13.46□□□□□ -0.25
TTC28-207ENST00000490475 LRP10Q7Z4F1 713 aa13.46□□□□□ -0.25
TTC28-207ENST00000490475 HSP90B1P14625 803 aaKnown RBP13.45□□□□□ -0.26
TTC28-207ENST00000490475 EPHX2P34913 555 aa13.45□□□□□ -0.26
TTC28-207ENST00000490475 TCIRG1Q13488 830 aa13.45□□□□□ -0.26
TTC28-207ENST00000490475 LARGE2Q8N3Y3 721 aa13.45□□□□□ -0.26
TTC28-207ENST00000490475 CFAP44Q96MT7 982 aa13.45□□□□□ -0.26
TTC28-207ENST00000490475 DBF4Q9UBU7 674 aaPredicted RBP13.45□□□□□ -0.26
TTC28-207ENST00000490475 SNED1Q8TER0 1413 aa13.45□□□□□ -0.26
TTC28-207ENST00000490475 SH3TC1Q8TE82 1336 aa13.44□□□□□ -0.26
TTC28-207ENST00000490475 HDGFL1Q5TGJ6 251 aa13.44□□□□□ -0.26
TTC28-207ENST00000490475 NIM1KQ8IY84 436 aa13.44□□□□□ -0.26
TTC28-207ENST00000490475 XAGE3Q8WTP9 111 aa13.44□□□□□ -0.26
TTC28-207ENST00000490475 HYPKQ9NX55 129 aa13.44□□□□□ -0.26
TTC28-207ENST00000490475 ATP6V0A2Q9Y487 856 aa13.44□□□□□ -0.26
TTC28-207ENST00000490475 LAS1LQ9Y4W2 734 aaKnown RBP13.44□□□□□ -0.26
TTC28-207ENST00000490475 ZNF541Q9H0D2 1346 aa13.43□□□□□ -0.26
TTC28-207ENST00000490475 APAF1O14727 1248 aa13.43□□□□□ -0.26
TTC28-207ENST00000490475 AIMP1Q12904 312 aaKnown RBP13.43□□□□□ -0.26
TTC28-207ENST00000490475 EAPPQ56P03 285 aaPredicted RBP13.43□□□□□ -0.26
TTC28-207ENST00000490475 DDX46Q7L014 1031 aaKnown RBP13.43□□□□□ -0.26
TTC28-207ENST00000490475 NLRP10Q86W26 655 aa13.43□□□□□ -0.26
TTC28-207ENST00000490475 PLBD2Q8NHP8 589 aa13.43□□□□□ -0.26
TTC28-207ENST00000490475 TRMT112Q9UI30 125 aaKnown RBP13.43□□□□□ -0.26
TTC28-207ENST00000490475 TRIM35Q9UPQ4 493 aa13.43□□□□□ -0.26
TTC28-207ENST00000490475 CLEC11AQ9Y240 323 aa13.43□□□□□ -0.26
TTC28-207ENST00000490475 PASKQ96RG2 1323 aa13.42□□□□□ -0.26
TTC28-207ENST00000490475 TMEM88BA6NKF7 163 aa13.42□□□□□ -0.26
TTC28-207ENST00000490475 PROSER3Q2NL68 480 aa13.42□□□□□ -0.26
TTC28-207ENST00000490475 OLFM4Q6UX06 510 aa13.42□□□□□ -0.26
TTC28-207ENST00000490475 ANKRD13DQ6ZTN6 518 aa13.42□□□□□ -0.26
TTC28-207ENST00000490475 SP8Q8IXZ3 490 aa13.42□□□□□ -0.26
TTC28-207ENST00000490475 PPIP5K2O43314 1243 aa13.41□□□□□ -0.26
TTC28-207ENST00000490475 GNAI1P63096 354 aa13.41□□□□□ -0.26
TTC28-207ENST00000490475 FAM9BQ8IZU0 186 aa13.41□□□□□ -0.26
TTC28-207ENST00000490475 RTFDC1Q9BY42 306 aaPredicted RBP13.41□□□□□ -0.26
TTC28-207ENST00000490475 CHPF2Q9P2E5 772 aa13.41□□□□□ -0.26
TTC28-207ENST00000490475 ABCC4O15439 1325 aa13.4□□□□□ -0.26
TTC28-207ENST00000490475 CDHR2Q9BYE9 1310 aa13.4□□□□□ -0.26
TTC28-207ENST00000490475 ANXA1P04083 346 aa13.4□□□□□ -0.26
TTC28-207ENST00000490475 POTEIP0CG38 1075 aa13.4□□□□□ -0.26
TTC28-207ENST00000490475 POTEJP0CG39 1038 aa13.4□□□□□ -0.26
TTC28-207ENST00000490475 TRIM28Q13263 835 aaKnown RBP13.4□□□□□ -0.26
TTC28-207ENST00000490475 GRAPQ13588 217 aa13.4□□□□□ -0.26
TTC28-207ENST00000490475 DPP8Q6V1X1 898 aaPredicted RBP13.4□□□□□ -0.26
TTC28-207ENST00000490475 USP50Q70EL3 339 aaPredicted RBP13.4□□□□□ -0.26
TTC28-207ENST00000490475 MPNDQ8N594 471 aa13.4□□□□□ -0.26
TTC28-207ENST00000490475 GRAPLQ8TC17 118 aaPredicted RBP13.4□□□□□ -0.26
TTC28-207ENST00000490475 NECTIN2Q92692 538 aa13.4□□□□□ -0.26
TTC28-207ENST00000490475 IFT57Q9NWB7 429 aa13.4□□□□□ -0.26
TTC28-207ENST00000490475 GJA3Q9Y6H8 435 aa13.4□□□□□ -0.26
TTC28-207ENST00000490475 ADAMTSL1Q8N6G6 1762 aa13.4□□□□□ -0.26
TTC28-207ENST00000490475 ITGBL1O95965 494 aaPredicted RBP13.39□□□□□ -0.27
TTC28-207ENST00000490475 HSPA1AP0DMV8 641 aaKnown RBP13.39□□□□□ -0.27
TTC28-207ENST00000490475 HSPA1BP0DMV9 641 aaKnown RBP13.39□□□□□ -0.27
TTC28-207ENST00000490475 TNIP1Q15025 636 aa13.39□□□□□ -0.27
TTC28-207ENST00000490475 DUSP27Q5VZP5 1158 aa13.39□□□□□ -0.27
TTC28-207ENST00000490475 DIEXFQ68CQ4 756 aaKnown RBP13.39□□□□□ -0.27
TTC28-207ENST00000490475 CNTROBQ8N137 903 aa13.39□□□□□ -0.27
TTC28-207ENST00000490475 ZNRF3Q9ULT6 936 aa13.39□□□□□ -0.27
TTC28-207ENST00000490475 CNTNAP1P78357 1384 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms