RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 APAF1O14727 1248 aa12.71□□□□□ -0.37
TMEM39A-210ENST00000490099 NTSR2O95665 410 aa12.71□□□□□ -0.37
TMEM39A-210ENST00000490099 ALDH1B1P30837 517 aa12.71□□□□□ -0.37
TMEM39A-210ENST00000490099 ERFEQ4G0M1 354 aa12.71□□□□□ -0.37
TMEM39A-210ENST00000490099 PARP10Q53GL7 1025 aa12.71□□□□□ -0.37
TMEM39A-210ENST00000490099 COPS6Q7L5N1 327 aa12.71□□□□□ -0.37
TMEM39A-210ENST00000490099 RRAGCQ9HB90 399 aa12.71□□□□□ -0.37
TMEM39A-210ENST00000490099 ARFGEF2Q9Y6D5 1785 aa12.71□□□□□ -0.38
TMEM39A-210ENST00000490099 ANXA1P04083 346 aa12.7□□□□□ -0.38
TMEM39A-210ENST00000490099 VEGFAP15692 232 aaPredicted RBP12.7□□□□□ -0.38
TMEM39A-210ENST00000490099 GPTP24298 496 aa12.7□□□□□ -0.38
TMEM39A-210ENST00000490099 FSTL1Q12841 308 aa12.7□□□□□ -0.38
TMEM39A-210ENST00000490099 CCDC184Q52MB2 194 aa12.7□□□□□ -0.38
TMEM39A-210ENST00000490099 NUTM1Q86Y26 1132 aa12.7□□□□□ -0.38
TMEM39A-210ENST00000490099 CEP350Q5VT06 3117 aa12.69□□□□□ -0.38
TMEM39A-210ENST00000490099 FAM177BA6PVY3 158 aa12.69□□□□□ -0.38
TMEM39A-210ENST00000490099 GTF2E1P29083 439 aaPredicted RBP12.69□□□□□ -0.38
TMEM39A-210ENST00000490099 TCIRG1Q13488 830 aa12.69□□□□□ -0.38
TMEM39A-210ENST00000490099 CCDC93Q567U6 631 aa12.69□□□□□ -0.38
TMEM39A-210ENST00000490099 CC2D2BQ6DHV5 1058 aa12.69□□□□□ -0.38
TMEM39A-210ENST00000490099 RTKN2Q8IZC4 609 aa12.69□□□□□ -0.38
TMEM39A-210ENST00000490099 DNAJC5GQ8N7S2 189 aa12.69□□□□□ -0.38
TMEM39A-210ENST00000490099 XAGE3Q8WTP9 111 aa12.69□□□□□ -0.38
TMEM39A-210ENST00000490099 CRAMP1Q96RY5 1269 aa12.69□□□□□ -0.38
TMEM39A-210ENST00000490099 MBIPQ9NS73 344 aa12.69□□□□□ -0.38
TMEM39A-210ENST00000490099 DICER1Q9UPY3 1922 aaKnown RBP12.68□□□□□ -0.38
TMEM39A-210ENST00000490099 RNF123Q5XPI4 1314 aa12.68□□□□□ -0.38
TMEM39A-210ENST00000490099 CCDC88AQ3V6T2 1871 aa12.68□□□□□ -0.38
TMEM39A-210ENST00000490099 APLP1P51693 650 aa12.68□□□□□ -0.38
TMEM39A-210ENST00000490099 FKBP4Q02790 459 aaKnown RBP eCLIP12.68□□□□□ -0.38
TMEM39A-210ENST00000490099 HSP90AB3PQ58FF7 597 aa12.68□□□□□ -0.38
TMEM39A-210ENST00000490099 DUSP27Q5VZP5 1158 aa12.68□□□□□ -0.38
TMEM39A-210ENST00000490099 DPY19L2Q6NUT2 758 aa12.68□□□□□ -0.38
TMEM39A-210ENST00000490099 C3orf67Q6ZVT6 689 aa12.68□□□□□ -0.38
TMEM39A-210ENST00000490099 PPP1R42Q7Z4L9 355 aa12.68□□□□□ -0.38
TMEM39A-210ENST00000490099 NLRP10Q86W26 655 aa12.68□□□□□ -0.38
TMEM39A-210ENST00000490099 UTP14AQ9BVJ6 771 aaKnown RBP12.68□□□□□ -0.38
TMEM39A-210ENST00000490099 IFT57Q9NWB7 429 aa12.68□□□□□ -0.38
TMEM39A-210ENST00000490099 CHPF2Q9P2E5 772 aa12.68□□□□□ -0.38
TMEM39A-210ENST00000490099 CALD1Q05682 793 aaKnown RBP12.67□□□□□ -0.38
TMEM39A-210ENST00000490099 TRIM28Q13263 835 aaKnown RBP12.67□□□□□ -0.38
TMEM39A-210ENST00000490099 GRIPAP1Q4V328 841 aa12.67□□□□□ -0.38
TMEM39A-210ENST00000490099 OLFM4Q6UX06 510 aa12.67□□□□□ -0.38
TMEM39A-210ENST00000490099 PSMD1Q99460 953 aa12.67□□□□□ -0.38
TMEM39A-210ENST00000490099 DBF4Q9UBU7 674 aaPredicted RBP12.67□□□□□ -0.38
TMEM39A-210ENST00000490099 TNRC6CQ9HCJ0 1690 aaKnown RBP12.67□□□□□ -0.38
TMEM39A-210ENST00000490099 GNAI1P63096 354 aa12.66□□□□□ -0.38
TMEM39A-210ENST00000490099 CCDC27Q2M243 656 aa12.66□□□□□ -0.38
TMEM39A-210ENST00000490099 HDGFL1Q5TGJ6 251 aa12.66□□□□□ -0.38
TMEM39A-210ENST00000490099 PLBD2Q8NHP8 589 aa12.66□□□□□ -0.38
TMEM39A-210ENST00000490099 ISCA1Q9BUE6 129 aa12.66□□□□□ -0.38
TMEM39A-210ENST00000490099 HYPKQ9NX55 129 aa12.66□□□□□ -0.38
TMEM39A-210ENST00000490099 LAS1LQ9Y4W2 734 aaKnown RBP12.66□□□□□ -0.38
TMEM39A-210ENST00000490099 WDR90Q96KV7 1748 aa12.65□□□□□ -0.38
TMEM39A-210ENST00000490099 ZNF316A6NFI3 1004 aaPredicted RBP12.65□□□□□ -0.38
TMEM39A-210ENST00000490099 ANKRD13DQ6ZTN6 518 aa12.65□□□□□ -0.38
TMEM39A-210ENST00000490099 C16orf71Q8IYS4 520 aaPredicted RBP12.65□□□□□ -0.38
TMEM39A-210ENST00000490099 SMC1BQ8NDV3 1235 aa12.65□□□□□ -0.38
TMEM39A-210ENST00000490099 NECTIN2Q92692 538 aa12.65□□□□□ -0.38
TMEM39A-210ENST00000490099 L3MBTL3Q96JM7 780 aaPredicted RBP12.65□□□□□ -0.38
TMEM39A-210ENST00000490099 NLRP3Q96P20 1036 aa12.65□□□□□ -0.38
TMEM39A-210ENST00000490099 FZD9O00144 591 aa12.64□□□□□ -0.39
TMEM39A-210ENST00000490099 DDNO94850 711 aaPredicted RBP12.64□□□□□ -0.39
TMEM39A-210ENST00000490099 AIMP1Q12904 312 aaKnown RBP12.64□□□□□ -0.39
TMEM39A-210ENST00000490099 SYNE4Q8N205 404 aa12.64□□□□□ -0.39
TMEM39A-210ENST00000490099 RPGRQ92834 1020 aaKnown RBP12.64□□□□□ -0.39
TMEM39A-210ENST00000490099 RBM17Q96I25 401 aaKnown RBP12.64□□□□□ -0.39
TMEM39A-210ENST00000490099 ZNF277Q9NRM2 450 aaPredicted RBP12.64□□□□□ -0.39
TMEM39A-210ENST00000490099 TIAM2Q8IVF5 1701 aa12.63□□□□□ -0.39
TMEM39A-210ENST00000490099 IARSP41252 1262 aaKnown RBP12.63□□□□□ -0.39
TMEM39A-210ENST00000490099 C8orf58Q8NAV2 365 aa12.63□□□□□ -0.39
TMEM39A-210ENST00000490099 ATP6V0A2Q9Y487 856 aa12.63□□□□□ -0.39
TMEM39A-210ENST00000490099 SH3TC1Q8TE82 1336 aa12.62□□□□□ -0.39
TMEM39A-210ENST00000490099 BBOX1O75936 387 aa12.62□□□□□ -0.39
TMEM39A-210ENST00000490099 WWC1Q8IX03 1113 aa12.62□□□□□ -0.39
TMEM39A-210ENST00000490099 CACNA1SQ13698 1873 aa12.61□□□□□ -0.39
TMEM39A-210ENST00000490099 HCLS1P14317 486 aaPredicted RBP12.61□□□□□ -0.39
TMEM39A-210ENST00000490099 SF3B3Q15393 1217 aaKnown RBP12.61□□□□□ -0.39
TMEM39A-210ENST00000490099 SP8Q8IXZ3 490 aa12.61□□□□□ -0.39
TMEM39A-210ENST00000490099 RTFDC1Q9BY42 306 aaPredicted RBP12.61□□□□□ -0.39
TMEM39A-210ENST00000490099 CHMP4AQ9BY43 222 aa12.61□□□□□ -0.39
TMEM39A-210ENST00000490099 VPS33BQ9H267 617 aa12.61□□□□□ -0.39
TMEM39A-210ENST00000490099 TRMT112Q9UI30 125 aaKnown RBP12.61□□□□□ -0.39
TMEM39A-210ENST00000490099 IL16Q14005 1332 aa12.61□□□□□ -0.39
TMEM39A-210ENST00000490099 PPEF1O14829 653 aaPredicted RBP12.6□□□□□ -0.39
TMEM39A-210ENST00000490099 SLC51AQ86UW1 340 aa12.6□□□□□ -0.39
TMEM39A-210ENST00000490099 TSPYL6Q8N831 410 aa12.6□□□□□ -0.39
TMEM39A-210ENST00000490099 TAF1DQ9H5J8 278 aaPredicted RBP12.6□□□□□ -0.39
TMEM39A-210ENST00000490099 ANKRD36CQ5JPF3 1778 aa12.6□□□□□ -0.39
TMEM39A-210ENST00000490099 ABCC4O15439 1325 aa12.6□□□□□ -0.39
TMEM39A-210ENST00000490099 ZNF541Q9H0D2 1346 aa12.6□□□□□ -0.39
TMEM39A-210ENST00000490099 COL4A5P29400 1685 aa12.59□□□□□ -0.39
TMEM39A-210ENST00000490099 IQCA1LA6NCM1 817 aa12.59□□□□□ -0.39
TMEM39A-210ENST00000490099 SPDYE2BA6NHP3 402 aa12.59□□□□□ -0.39
TMEM39A-210ENST00000490099 ELL2O00472 640 aaPredicted RBP12.59□□□□□ -0.39
TMEM39A-210ENST00000490099 SPDYE6P0CI01 402 aa12.59□□□□□ -0.39
TMEM39A-210ENST00000490099 SPDYE2Q495Y8 402 aa12.59□□□□□ -0.39
TMEM39A-210ENST00000490099 GPC2Q8N158 579 aa12.59□□□□□ -0.39
TMEM39A-210ENST00000490099 JMYQ8N9B5 988 aa12.59□□□□□ -0.39
TMEM39A-210ENST00000490099 PHAXQ9H814 394 aaKnown RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms