RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 TRMT112Q9UI30 125 aaKnown RBP13.82□□□□□ -0.2
VPS13D-210ENST00000489961 N4BP2Q86UW6 1770 aaPredicted RBP13.81□□□□□ -0.2
VPS13D-210ENST00000489961 IPO8O15397 1037 aaKnown RBP13.81□□□□□ -0.2
VPS13D-210ENST00000489961 ERFEQ4G0M1 354 aa13.81□□□□□ -0.2
VPS13D-210ENST00000489961 SLC4A10Q6U841 1118 aa13.81□□□□□ -0.2
VPS13D-210ENST00000489961 NUTM1Q86Y26 1132 aa13.81□□□□□ -0.2
VPS13D-210ENST00000489961 CCDC24Q8N4L8 307 aa13.81□□□□□ -0.2
VPS13D-210ENST00000489961 LINS1Q8NG48 757 aa13.81□□□□□ -0.2
VPS13D-210ENST00000489961 API5Q9BZZ5 524 aaKnown RBP13.81□□□□□ -0.2
VPS13D-210ENST00000489961 NOB1Q9ULX3 412 aaKnown RBP13.81□□□□□ -0.2
VPS13D-210ENST00000489961 PDZRN3Q9UPQ7 1066 aa13.81□□□□□ -0.2
VPS13D-210ENST00000489961 SH3TC1Q8TE82 1336 aa13.81□□□□□ -0.2
VPS13D-210ENST00000489961 NEURL1BA8MQ27 555 aa13.8□□□□□ -0.2
VPS13D-210ENST00000489961 BCAR3O75815 825 aa13.8□□□□□ -0.2
VPS13D-210ENST00000489961 IGKV5-2P06315 115 aa13.8□□□□□ -0.2
VPS13D-210ENST00000489961 NLGN2Q8NFZ4 835 aa13.8□□□□□ -0.2
VPS13D-210ENST00000489961 ARHGAP45Q92619 1136 aa13.8□□□□□ -0.2
VPS13D-210ENST00000489961 KIAA1551Q9HCM1 1747 aa13.8□□□□□ -0.2
VPS13D-210ENST00000489961 RIC1Q4ADV7 1423 aa13.8□□□□□ -0.2
VPS13D-210ENST00000489961 PXDNLA1KZ92 1463 aa13.8□□□□□ -0.2
VPS13D-210ENST00000489961 H0YIN7 160 aa13.79□□□□□ -0.2
VPS13D-210ENST00000489961 HSP90B1P14625 803 aaKnown RBP13.79□□□□□ -0.2
VPS13D-210ENST00000489961 CWF19L2Q2TBE0 894 aaKnown RBP13.79□□□□□ -0.2
VPS13D-210ENST00000489961 BEND3Q5T5X7 828 aa13.79□□□□□ -0.2
VPS13D-210ENST00000489961 ZBTB38Q8NAP3 1195 aaPredicted RBP13.79□□□□□ -0.2
VPS13D-210ENST00000489961 FRAT1Q92837 279 aaPredicted RBP13.79□□□□□ -0.2
VPS13D-210ENST00000489961 SRCIN1Q9C0H9 1055 aa13.79□□□□□ -0.2
VPS13D-210ENST00000489961 RCAN3Q9UKA8 241 aa13.79□□□□□ -0.2
VPS13D-210ENST00000489961 ABCC12Q96J65 1359 aa13.79□□□□□ -0.2
VPS13D-210ENST00000489961 DLEC1Q9Y238 1755 aa13.78□□□□□ -0.2
VPS13D-210ENST00000489961 A0A0G2JLW4 131 aa13.78□□□□□ -0.2
VPS13D-210ENST00000489961 ALDH1L1O75891 902 aa13.78□□□□□ -0.2
VPS13D-210ENST00000489961 PCCAP05165 728 aaPredicted RBP13.78□□□□□ -0.2
VPS13D-210ENST00000489961 DPEP1P16444 411 aa13.78□□□□□ -0.2
VPS13D-210ENST00000489961 SLC10A5Q5PT55 438 aa13.78□□□□□ -0.2
VPS13D-210ENST00000489961 C2CD5Q86YS7 1000 aa13.78□□□□□ -0.2
VPS13D-210ENST00000489961 FAM89AQ96GI7 184 aa13.78□□□□□ -0.2
VPS13D-210ENST00000489961 TNRC6CQ9HCJ0 1690 aaKnown RBP13.78□□□□□ -0.2
VPS13D-210ENST00000489961 LAMB2P55268 1798 aa13.78□□□□□ -0.2
VPS13D-210ENST00000489961 COL11A2P13942 1736 aaPredicted RBP13.77□□□□□ -0.21
VPS13D-210ENST00000489961 CHRNA5P30532 468 aa13.77□□□□□ -0.21
VPS13D-210ENST00000489961 GCKRQ14397 625 aa13.77□□□□□ -0.21
VPS13D-210ENST00000489961 RTL5Q5HYW3 569 aaPredicted RBP13.77□□□□□ -0.21
VPS13D-210ENST00000489961 ZKSCAN2Q63HK3 967 aa13.77□□□□□ -0.21
VPS13D-210ENST00000489961 DDX60Q8IY21 1712 aaKnown RBP13.77□□□□□ -0.21
VPS13D-210ENST00000489961 NLRP3Q96P20 1036 aa13.77□□□□□ -0.21
VPS13D-210ENST00000489961 BRCA1P38398 1863 aaKnown RBP13.76□□□□□ -0.21
VPS13D-210ENST00000489961 DCAF8L1A6NGE4 600 aa13.76□□□□□ -0.21
VPS13D-210ENST00000489961 IRS4O14654 1257 aaPredicted RBP13.76□□□□□ -0.21
VPS13D-210ENST00000489961 HCLS1P14317 486 aaPredicted RBP13.76□□□□□ -0.21
VPS13D-210ENST00000489961 CCT4P50991 539 aaKnown RBP13.76□□□□□ -0.21
VPS13D-210ENST00000489961 ATF7IPQ6VMQ6 1270 aa13.76□□□□□ -0.21
VPS13D-210ENST00000489961 SYNE4Q8N205 404 aa13.76□□□□□ -0.21
VPS13D-210ENST00000489961 PIM2Q9P1W9 311 aa13.76□□□□□ -0.21
VPS13D-210ENST00000489961 CDHR2Q9BYE9 1310 aa13.75□□□□□ -0.21
VPS13D-210ENST00000489961 KLRG2A4D1S0 409 aaPredicted RBP13.75□□□□□ -0.21
VPS13D-210ENST00000489961 H7C1W4 665 aa13.75□□□□□ -0.21
VPS13D-210ENST00000489961 SRGNP10124 158 aa13.75□□□□□ -0.21
VPS13D-210ENST00000489961 NPR1P16066 1061 aa13.75□□□□□ -0.21
VPS13D-210ENST00000489961 KCNA3P22001 575 aa13.75□□□□□ -0.21
VPS13D-210ENST00000489961 STYK1Q6J9G0 422 aa13.75□□□□□ -0.21
VPS13D-210ENST00000489961 ZNF622Q969S3 477 aaKnown RBP eCLIP13.75□□□□□ -0.21
VPS13D-210ENST00000489961 MASTLQ96GX5 879 aa13.75□□□□□ -0.21
VPS13D-210ENST00000489961 C9orf78Q9NZ63 289 aaPredicted RBP13.75□□□□□ -0.21
VPS13D-210ENST00000489961 ABCC4O15439 1325 aa13.74□□□□□ -0.21
VPS13D-210ENST00000489961 PDE8AO60658 829 aa13.74□□□□□ -0.21
VPS13D-210ENST00000489961 TRIM27P14373 513 aa13.74□□□□□ -0.21
VPS13D-210ENST00000489961 CRY2Q49AN0 593 aa13.74□□□□□ -0.21
VPS13D-210ENST00000489961 UBE3BQ7Z3V4 1068 aa13.74□□□□□ -0.21
VPS13D-210ENST00000489961 PELP1Q8IZL8 1130 aaKnown RBP13.74□□□□□ -0.21
VPS13D-210ENST00000489961 JARID2Q92833 1246 aaPredicted RBP13.74□□□□□ -0.21
VPS13D-210ENST00000489961 RPGRQ92834 1020 aaKnown RBP13.74□□□□□ -0.21
VPS13D-210ENST00000489961 CNKSR1Q969H4 720 aa13.74□□□□□ -0.21
VPS13D-210ENST00000489961 MYH3P11055 1940 aa13.74□□□□□ -0.21
VPS13D-210ENST00000489961 CACNA1SQ13698 1873 aa13.74□□□□□ -0.21
VPS13D-210ENST00000489961 GRM8O00222 908 aa13.73□□□□□ -0.21
VPS13D-210ENST00000489961 FTSJ3Q8IY81 847 aaKnown RBP13.73□□□□□ -0.21
VPS13D-210ENST00000489961 TTLL6Q8N841 843 aa13.73□□□□□ -0.21
VPS13D-210ENST00000489961 WWC3Q9ULE0 1092 aa13.73□□□□□ -0.21
VPS13D-210ENST00000489961 MS4A1P11836 297 aa13.72□□□□□ -0.21
VPS13D-210ENST00000489961 ALDH1B1P30837 517 aa13.72□□□□□ -0.21
VPS13D-210ENST00000489961 GPR162Q16538 588 aa13.72□□□□□ -0.21
VPS13D-210ENST00000489961 DALRD3Q5D0E6 543 aaKnown RBP13.72□□□□□ -0.21
VPS13D-210ENST00000489961 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.72□□□□□ -0.21
VPS13D-210ENST00000489961 CLUAP1Q96AJ1 413 aa13.72□□□□□ -0.21
VPS13D-210ENST00000489961 RBM17Q96I25 401 aaKnown RBP13.72□□□□□ -0.21
VPS13D-210ENST00000489961 BCS1LQ9Y276 419 aa13.72□□□□□ -0.21
VPS13D-210ENST00000489961 ARFGEF1Q9Y6D6 1849 aa13.71□□□□□ -0.21
VPS13D-210ENST00000489961 HOXA10P31260 410 aaPredicted RBP13.71□□□□□ -0.21
VPS13D-210ENST00000489961 CASP7P55210 303 aa13.71□□□□□ -0.21
VPS13D-210ENST00000489961 SF3B3Q15393 1217 aaKnown RBP13.71□□□□□ -0.21
VPS13D-210ENST00000489961 INTS3Q68E01 1043 aaKnown RBP13.71□□□□□ -0.21
VPS13D-210ENST00000489961 C3orf67Q6ZVT6 689 aa13.71□□□□□ -0.21
VPS13D-210ENST00000489961 DDX46Q7L014 1031 aaKnown RBP13.71□□□□□ -0.21
VPS13D-210ENST00000489961 DZIP1LQ8IYY4 767 aaKnown RBP13.71□□□□□ -0.21
VPS13D-210ENST00000489961 TNNQ9UQP3 1299 aa13.71□□□□□ -0.21
VPS13D-210ENST00000489961 UTYO14607 1347 aa13.7□□□□□ -0.22
VPS13D-210ENST00000489961 CCDC152Q4G0S7 254 aa13.7□□□□□ -0.22
VPS13D-210ENST00000489961 CRAMP1Q96RY5 1269 aa13.7□□□□□ -0.22
VPS13D-210ENST00000489961 PLA2G12BQ9BX93 195 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms