RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 KSR2Q6VAB6 950 aa22.23■■□□□ 1.15
MDC1-206ENST00000489540 NUP98P52948 1817 aa22.23■■□□□ 1.15
MDC1-206ENST00000489540 ATP5J2-PTCD1G3V325 749 aa22.23■■□□□ 1.15
MDC1-206ENST00000489540 METTL22Q9BUU2 404 aaPredicted RBP22.23■■□□□ 1.15
MDC1-206ENST00000489540 ABCC12Q96J65 1359 aa22.22■■□□□ 1.15
MDC1-206ENST00000489540 ALDH1B1P30837 517 aa22.22■■□□□ 1.15
MDC1-206ENST00000489540 CRY2Q49AN0 593 aa22.22■■□□□ 1.15
MDC1-206ENST00000489540 NLRP3Q96P20 1036 aa22.22■■□□□ 1.15
MDC1-206ENST00000489540 SH3TC1Q8TE82 1336 aa22.21■■□□□ 1.15
MDC1-206ENST00000489540 PI4KAP2A4QPH2 592 aa22.21■■□□□ 1.15
MDC1-206ENST00000489540 FLIIQ13045 1269 aa22.21■■□□□ 1.15
MDC1-206ENST00000489540 RIC1Q4ADV7 1423 aa22.21■■□□□ 1.15
MDC1-206ENST00000489540 G2E3Q7L622 706 aa22.21■■□□□ 1.15
MDC1-206ENST00000489540 PI4KAP1Q8N8J0 262 aa22.21■■□□□ 1.15
MDC1-206ENST00000489540 MYD88Q99836 296 aa22.21■■□□□ 1.15
MDC1-206ENST00000489540 MAP3K2Q9Y2U5 619 aa22.21■■□□□ 1.15
MDC1-206ENST00000489540 GOLGB1Q14789 3259 aaKnown RBP22.2■■□□□ 1.14
MDC1-206ENST00000489540 TRMT2AQ8IZ69 625 aaKnown RBP22.2■■□□□ 1.14
MDC1-206ENST00000489540 CDCA7LQ96GN5 454 aa22.2■■□□□ 1.14
MDC1-206ENST00000489540 PRPF40BQ6NWY9 871 aaKnown RBP22.19■■□□□ 1.14
MDC1-206ENST00000489540 CCDC191Q8NCU4 936 aa22.19■■□□□ 1.14
MDC1-206ENST00000489540 HOXA10P31260 410 aaPredicted RBP22.18■■□□□ 1.14
MDC1-206ENST00000489540 NEXNQ0ZGT2 675 aa22.18■■□□□ 1.14
MDC1-206ENST00000489540 RPGRQ92834 1020 aaKnown RBP22.18■■□□□ 1.14
MDC1-206ENST00000489540 C21orf2O43822 256 aa22.17■■□□□ 1.14
MDC1-206ENST00000489540 FKBP5Q13451 457 aaPredicted RBP22.17■■□□□ 1.14
MDC1-206ENST00000489540 SOGA3Q5TF21 947 aa22.17■■□□□ 1.14
MDC1-206ENST00000489540 RBM17Q96I25 401 aaKnown RBP22.17■■□□□ 1.14
MDC1-206ENST00000489540 ANKRD31Q8N7Z5 1873 aa22.17■■□□□ 1.14
MDC1-206ENST00000489540 HCLS1P14317 486 aaPredicted RBP22.16■■□□□ 1.14
MDC1-206ENST00000489540 HSP90B1P14625 803 aaKnown RBP22.16■■□□□ 1.14
MDC1-206ENST00000489540 SYNE4Q8N205 404 aa22.16■■□□□ 1.14
MDC1-206ENST00000489540 ZBTB38Q8NAP3 1195 aaPredicted RBP22.16■■□□□ 1.14
MDC1-206ENST00000489540 ZNF428Q96B54 188 aa22.16■■□□□ 1.14
MDC1-206ENST00000489540 FAM89AQ96GI7 184 aa22.16■■□□□ 1.14
MDC1-206ENST00000489540 CWC25Q9NXE8 425 aaPredicted RBP22.16■■□□□ 1.14
MDC1-206ENST00000489540 BRCA1P38398 1863 aaKnown RBP22.16■■□□□ 1.14
MDC1-206ENST00000489540 CRAMP1Q96RY5 1269 aa22.15■■□□□ 1.14
MDC1-206ENST00000489540 ADCY9O60503 1353 aa22.15■■□□□ 1.14
MDC1-206ENST00000489540 HNRNPUQ00839 825 aaKnown RBP eCLIP22.14■■□□□ 1.14
MDC1-206ENST00000489540 C3orf67Q6ZVT6 689 aa22.14■■□□□ 1.14
MDC1-206ENST00000489540 C7orf43Q8WVR3 580 aa22.14■■□□□ 1.14
MDC1-206ENST00000489540 ZNF219Q9P2Y4 722 aaPredicted RBP22.14■■□□□ 1.14
MDC1-206ENST00000489540 DNAAF4Q8WXU2 420 aa22.14■■□□□ 1.13
MDC1-206ENST00000489540 PCCAP05165 728 aaPredicted RBP22.13■■□□□ 1.13
MDC1-206ENST00000489540 IGKV5-2P06315 115 aa22.13■■□□□ 1.13
MDC1-206ENST00000489540 CT47B1P0C2W7 299 aaPredicted RBP22.13■■□□□ 1.13
MDC1-206ENST00000489540 ZNF784Q8NCA9 323 aaPredicted RBP22.13■■□□□ 1.13
MDC1-206ENST00000489540 DLEC1Q9Y238 1755 aa22.12■■□□□ 1.13
MDC1-206ENST00000489540 IRS4O14654 1257 aaPredicted RBP22.12■■□□□ 1.13
MDC1-206ENST00000489540 C9orf131Q5VYM1 1079 aa22.12■■□□□ 1.13
MDC1-206ENST00000489540 CHD4Q14839 1912 aa22.12■■□□□ 1.13
MDC1-206ENST00000489540 ARFGEF1Q9Y6D6 1849 aa22.11■■□□□ 1.13
MDC1-206ENST00000489540 CCDC93Q567U6 631 aa22.11■■□□□ 1.13
MDC1-206ENST00000489540 RTL5Q5HYW3 569 aaPredicted RBP22.11■■□□□ 1.13
MDC1-206ENST00000489540 NEURL1BA8MQ27 555 aa22.1■■□□□ 1.13
MDC1-206ENST00000489540 NFKBIEO00221 500 aa22.1■■□□□ 1.13
MDC1-206ENST00000489540 LMNB1P20700 586 aa22.1■■□□□ 1.13
MDC1-206ENST00000489540 SF3B3Q15393 1217 aaKnown RBP22.1■■□□□ 1.13
MDC1-206ENST00000489540 CC2D2BQ6DHV5 1058 aa22.1■■□□□ 1.13
MDC1-206ENST00000489540 DDX46Q7L014 1031 aaKnown RBP22.1■■□□□ 1.13
MDC1-206ENST00000489540 RTKN2Q8IZC4 609 aa22.1■■□□□ 1.13
MDC1-206ENST00000489540 MRPL50Q8N5N7 158 aaKnown RBP22.1■■□□□ 1.13
MDC1-206ENST00000489540 LINS1Q8NG48 757 aa22.1■■□□□ 1.13
MDC1-206ENST00000489540 COL11A2P13942 1736 aaPredicted RBP22.09■■□□□ 1.13
MDC1-206ENST00000489540 BBOX1O75936 387 aa22.09■■□□□ 1.13
MDC1-206ENST00000489540 RASSF7Q02833 373 aa22.09■■□□□ 1.13
MDC1-206ENST00000489540 ALDH1L2Q3SY69 923 aa22.09■■□□□ 1.13
MDC1-206ENST00000489540 RNF181Q9P0P0 153 aa22.09■■□□□ 1.13
MDC1-206ENST00000489540 ANKRD36CQ5JPF3 1778 aa22.09■■□□□ 1.13
MDC1-206ENST00000489540 LTBP3Q9NS15 1303 aa22.08■■□□□ 1.13
MDC1-206ENST00000489540 CWF19L2Q2TBE0 894 aaKnown RBP22.08■■□□□ 1.13
MDC1-206ENST00000489540 GRIPAP1Q4V328 841 aa22.08■■□□□ 1.13
MDC1-206ENST00000489540 SSH1Q8WYL5 1049 aa22.08■■□□□ 1.13
MDC1-206ENST00000489540 TMX4Q9H1E5 349 aaPredicted RBP22.08■■□□□ 1.13
MDC1-206ENST00000489540 TAOK3Q9H2K8 898 aa22.08■■□□□ 1.13
MDC1-206ENST00000489540 ARFGEF2Q9Y6D5 1785 aa22.07■■□□□ 1.12
MDC1-206ENST00000489540 TNRC6CQ9HCJ0 1690 aaKnown RBP22.07■■□□□ 1.12
MDC1-206ENST00000489540 F6X3S4 739 aa22.06■■□□□ 1.12
MDC1-206ENST00000489540 PPEF1O14829 653 aaPredicted RBP22.06■■□□□ 1.12
MDC1-206ENST00000489540 PDE8AO60658 829 aa22.06■■□□□ 1.12
MDC1-206ENST00000489540 GCKRQ14397 625 aa22.06■■□□□ 1.12
MDC1-206ENST00000489540 ABCC4O15439 1325 aa22.06■■□□□ 1.12
MDC1-206ENST00000489540 CDHR2Q9BYE9 1310 aa22.06■■□□□ 1.12
MDC1-206ENST00000489540 H7C1W4 665 aa22.06■■□□□ 1.12
MDC1-206ENST00000489540 GRAPQ13588 217 aa22.06■■□□□ 1.12
MDC1-206ENST00000489540 BEND3Q5T5X7 828 aa22.06■■□□□ 1.12
MDC1-206ENST00000489540 GRAPLQ8TC17 118 aaPredicted RBP22.06■■□□□ 1.12
MDC1-206ENST00000489540 JARID2Q92833 1246 aaPredicted RBP22.06■■□□□ 1.12
MDC1-206ENST00000489540 PTPRCP08575 1304 aa22.05■■□□□ 1.12
MDC1-206ENST00000489540 SLX4Q8IY92 1834 aa22.05■■□□□ 1.12
MDC1-206ENST00000489540 ATP6V0A2Q9Y487 856 aa22.05■■□□□ 1.12
MDC1-206ENST00000489540 FKBP4Q02790 459 aaKnown RBP eCLIP22.04■■□□□ 1.12
MDC1-206ENST00000489540 OLFM4Q6UX06 510 aa22.04■■□□□ 1.12
MDC1-206ENST00000489540 TMC4Q7Z404 712 aa22.04■■□□□ 1.12
MDC1-206ENST00000489540 SMC4Q9NTJ3 1288 aa22.04■■□□□ 1.12
MDC1-206ENST00000489540 PRELPP51888 382 aa22.03■■□□□ 1.12
MDC1-206ENST00000489540 CCDC152Q4G0S7 254 aa22.03■■□□□ 1.12
MDC1-206ENST00000489540 SP8Q8IXZ3 490 aa22.03■■□□□ 1.12
MDC1-206ENST00000489540 CACNA1FO60840 1977 aa22.02■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms