RNA–Protein interactions for RNA: ENST00000489142.5

VTI1A-206, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-206ENST00000489142 C7orf43Q8WVR3 580 aa18.2■□□□□ 0.5
VTI1A-206ENST00000489142 CRY2Q49AN0 593 aa18.19■□□□□ 0.5
VTI1A-206ENST00000489142 PARP10Q53GL7 1025 aa18.19■□□□□ 0.5
VTI1A-206ENST00000489142 CCDC93Q567U6 631 aa18.19■□□□□ 0.5
VTI1A-206ENST00000489142 RPGRQ92834 1020 aaKnown RBP18.19■□□□□ 0.5
VTI1A-206ENST00000489142 TSR2Q969E8 191 aaKnown RBP18.19■□□□□ 0.5
VTI1A-206ENST00000489142 UTP14AQ9BVJ6 771 aaKnown RBP18.19■□□□□ 0.5
VTI1A-206ENST00000489142 DBF4Q9UBU7 674 aaPredicted RBP18.19■□□□□ 0.5
VTI1A-206ENST00000489142 SALL2Q9Y467 1007 aaPredicted RBP18.19■□□□□ 0.5
VTI1A-206ENST00000489142 RIC1Q4ADV7 1423 aa18.18■□□□□ 0.5
VTI1A-206ENST00000489142 TCERG1O14776 1098 aaKnown RBP18.18■□□□□ 0.5
VTI1A-206ENST00000489142 SOGA3Q5TF21 947 aa18.18■□□□□ 0.5
VTI1A-206ENST00000489142 NLRP10Q86W26 655 aa18.18■□□□□ 0.5
VTI1A-206ENST00000489142 LTBP3Q9NS15 1303 aa18.18■□□□□ 0.5
VTI1A-206ENST00000489142 ZC3H4Q9UPT8 1303 aaKnown RBP18.18■□□□□ 0.5
VTI1A-206ENST00000489142 TAF1P21675 1872 aa18.18■□□□□ 0.5
VTI1A-206ENST00000489142 ALDH1B1P30837 517 aa18.17■□□□□ 0.5
VTI1A-206ENST00000489142 TCIRG1Q13488 830 aa18.17■□□□□ 0.5
VTI1A-206ENST00000489142 TSPYL6Q8N831 410 aa18.17■□□□□ 0.5
VTI1A-206ENST00000489142 ZNF277Q9NRM2 450 aaPredicted RBP18.17■□□□□ 0.5
VTI1A-206ENST00000489142 DDX60Q8IY21 1712 aaKnown RBP18.17■□□□□ 0.5
VTI1A-206ENST00000489142 CEP350Q5VT06 3117 aa18.16■□□□□ 0.5
VTI1A-206ENST00000489142 GLTPD2A6NH11 291 aa18.16■□□□□ 0.5
VTI1A-206ENST00000489142 ATP5J2-PTCD1G3V325 749 aa18.16■□□□□ 0.5
VTI1A-206ENST00000489142 TOMM70O94826 608 aa18.16■□□□□ 0.5
VTI1A-206ENST00000489142 HCLS1P14317 486 aaPredicted RBP18.16■□□□□ 0.5
VTI1A-206ENST00000489142 HSP90AB3PQ58FF7 597 aa18.16■□□□□ 0.5
VTI1A-206ENST00000489142 ANKRD13DQ6ZTN6 518 aa18.16■□□□□ 0.5
VTI1A-206ENST00000489142 WWC1Q8IX03 1113 aa18.16■□□□□ 0.5
VTI1A-206ENST00000489142 C16orf71Q8IYS4 520 aaPredicted RBP18.16■□□□□ 0.5
VTI1A-206ENST00000489142 PLBD2Q8NHP8 589 aa18.16■□□□□ 0.5
VTI1A-206ENST00000489142 PHAXQ9H814 394 aaKnown RBP18.16■□□□□ 0.5
VTI1A-206ENST00000489142 HSPA6P17066 643 aa18.15■□□□□ 0.5
VTI1A-206ENST00000489142 RBM17Q96I25 401 aaKnown RBP18.15■□□□□ 0.5
VTI1A-206ENST00000489142 HYPKQ9NX55 129 aa18.15■□□□□ 0.5
VTI1A-206ENST00000489142 TRMT112Q9UI30 125 aaKnown RBP18.15■□□□□ 0.5
VTI1A-206ENST00000489142 WDR90Q96KV7 1748 aa18.15■□□□□ 0.5
VTI1A-206ENST00000489142 FKBP4Q02790 459 aaKnown RBP eCLIP18.14■□□□□ 0.49
VTI1A-206ENST00000489142 NLRP3Q96P20 1036 aa18.14■□□□□ 0.49
VTI1A-206ENST00000489142 SNED1Q8TER0 1413 aa18.14■□□□□ 0.49
VTI1A-206ENST00000489142 PPEF1O14829 653 aaPredicted RBP18.13■□□□□ 0.49
VTI1A-206ENST00000489142 HOXA10P31260 410 aaPredicted RBP18.13■□□□□ 0.49
VTI1A-206ENST00000489142 RTKN2Q8IZC4 609 aa18.13■□□□□ 0.49
VTI1A-206ENST00000489142 FAM9BQ8IZU0 186 aa18.13■□□□□ 0.49
VTI1A-206ENST00000489142 CCDC27Q2M243 656 aa18.12■□□□□ 0.49
VTI1A-206ENST00000489142 RTL5Q5HYW3 569 aaPredicted RBP18.12■□□□□ 0.49
VTI1A-206ENST00000489142 SLC10A5Q5PT55 438 aa18.12■□□□□ 0.49
VTI1A-206ENST00000489142 CRAMP1Q96RY5 1269 aa18.12■□□□□ 0.49
VTI1A-206ENST00000489142 SH3TC1Q8TE82 1336 aa18.12■□□□□ 0.49
VTI1A-206ENST00000489142 COL4A5P29400 1685 aa18.12■□□□□ 0.49
VTI1A-206ENST00000489142 POTECB2RU33 542 aa18.11■□□□□ 0.49
VTI1A-206ENST00000489142 DDNO94850 711 aaPredicted RBP18.11■□□□□ 0.49
VTI1A-206ENST00000489142 GOLGA2Q08379 1002 aa18.11■□□□□ 0.49
VTI1A-206ENST00000489142 DPY19L2Q6NUT2 758 aa18.11■□□□□ 0.49
VTI1A-206ENST00000489142 RIC3Q7Z5B4 369 aa18.11■□□□□ 0.49
VTI1A-206ENST00000489142 RBM46Q8TBY0 533 aaKnown RBP18.11■□□□□ 0.49
VTI1A-206ENST00000489142 FAM89AQ96GI7 184 aa18.11■□□□□ 0.49
VTI1A-206ENST00000489142 ISCA1Q9BUE6 129 aa18.11■□□□□ 0.49
VTI1A-206ENST00000489142 ABCC4O15439 1325 aa18.11■□□□□ 0.49
VTI1A-206ENST00000489142 COL4A1P02462 1669 aa18.1■□□□□ 0.49
VTI1A-206ENST00000489142 RNF123Q5XPI4 1314 aa18.1■□□□□ 0.49
VTI1A-206ENST00000489142 ZNF541Q9H0D2 1346 aa18.1■□□□□ 0.49
VTI1A-206ENST00000489142 VEGFAP15692 232 aaPredicted RBP18.1■□□□□ 0.49
VTI1A-206ENST00000489142 IARSP41252 1262 aaKnown RBP18.1■□□□□ 0.49
VTI1A-206ENST00000489142 CCDC30Q5VVM6 783 aa18.09■□□□□ 0.49
VTI1A-206ENST00000489142 MYD88Q99836 296 aa18.09■□□□□ 0.49
VTI1A-206ENST00000489142 FANCIQ9NVI1 1328 aa18.08■□□□□ 0.49
VTI1A-206ENST00000489142 TWISTNBQ3B726 338 aaPredicted RBP18.08■□□□□ 0.48
VTI1A-206ENST00000489142 JARID2Q92833 1246 aaPredicted RBP18.07■□□□□ 0.48
VTI1A-206ENST00000489142 PSMD1Q99460 953 aa18.07■□□□□ 0.48
VTI1A-206ENST00000489142 IL16Q14005 1332 aa18.06■□□□□ 0.48
VTI1A-206ENST00000489142 HTRA3P83110 453 aa18.06■□□□□ 0.48
VTI1A-206ENST00000489142 DDX46Q7L014 1031 aaKnown RBP18.06■□□□□ 0.48
VTI1A-206ENST00000489142 ATP6V0A2Q9Y487 856 aa18.06■□□□□ 0.48
VTI1A-206ENST00000489142 FSTL1Q12841 308 aa18.05■□□□□ 0.48
VTI1A-206ENST00000489142 CC2D2BQ6DHV5 1058 aa18.05■□□□□ 0.48
VTI1A-206ENST00000489142 G2E3Q7L622 706 aa18.05■□□□□ 0.48
VTI1A-206ENST00000489142 SMC1BQ8NDV3 1235 aa18.05■□□□□ 0.48
VTI1A-206ENST00000489142 STK31Q9BXU1 1019 aa18.05■□□□□ 0.48
VTI1A-206ENST00000489142 SPINK5Q9NQ38 1064 aaPredicted RBP18.05■□□□□ 0.48
VTI1A-206ENST00000489142 MAP3K2Q9Y2U5 619 aa18.05■□□□□ 0.48
VTI1A-206ENST00000489142 IRS4O14654 1257 aaPredicted RBP18.04■□□□□ 0.48
VTI1A-206ENST00000489142 POTEIP0CG38 1075 aa18.04■□□□□ 0.48
VTI1A-206ENST00000489142 POTEJP0CG39 1038 aa18.04■□□□□ 0.48
VTI1A-206ENST00000489142 APLP1P51693 650 aa18.04■□□□□ 0.48
VTI1A-206ENST00000489142 SCN4AP35499 1836 aa18.04■□□□□ 0.48
VTI1A-206ENST00000489142 LRRC37AA6NMS7 1700 aa18.03■□□□□ 0.48
VTI1A-206ENST00000489142 DDX58O95786 925 aaKnown RBP18.03■□□□□ 0.48
VTI1A-206ENST00000489142 TRIM28Q13263 835 aaKnown RBP18.03■□□□□ 0.48
VTI1A-206ENST00000489142 GRAPQ13588 217 aa18.03■□□□□ 0.48
VTI1A-206ENST00000489142 AOC3Q16853 763 aa18.03■□□□□ 0.48
VTI1A-206ENST00000489142 LARGE2Q8N3Y3 721 aa18.03■□□□□ 0.48
VTI1A-206ENST00000489142 GRAPLQ8TC17 118 aaPredicted RBP18.03■□□□□ 0.48
VTI1A-206ENST00000489142 JDP2Q8WYK2 163 aa18.03■□□□□ 0.48
VTI1A-206ENST00000489142 METTL22Q9BUU2 404 aaPredicted RBP18.03■□□□□ 0.48
VTI1A-206ENST00000489142 PI4KAP2A4QPH2 592 aa18.02■□□□□ 0.48
VTI1A-206ENST00000489142 FZD9O00144 591 aa18.02■□□□□ 0.48
VTI1A-206ENST00000489142 PPIP5K2O43314 1243 aa18.02■□□□□ 0.48
VTI1A-206ENST00000489142 SLC4A2P04920 1241 aa18.02■□□□□ 0.48
VTI1A-206ENST00000489142 EXOSC9Q06265 439 aaKnown RBP18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms