RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 ZNF853P0CG23 659 aa29.94■■■□□ 2.38
COL9A3-213ENST00000489045 OLFM4Q6UX06 510 aa29.94■■■□□ 2.38
COL9A3-213ENST00000489045 WDR90Q96KV7 1748 aa29.93■■■□□ 2.38
COL9A3-213ENST00000489045 IFT57Q9NWB7 429 aa29.93■■■□□ 2.38
COL9A3-213ENST00000489045 LAMB2P55268 1798 aa29.92■■■□□ 2.38
COL9A3-213ENST00000489045 CALD1Q05682 793 aaKnown RBP29.92■■■□□ 2.38
COL9A3-213ENST00000489045 DUSP27Q5VZP5 1158 aa29.92■■■□□ 2.38
COL9A3-213ENST00000489045 HSP90AB3PQ58FF7 597 aa29.91■■■□□ 2.38
COL9A3-213ENST00000489045 RPGRQ92834 1020 aaKnown RBP29.91■■■□□ 2.38
COL9A3-213ENST00000489045 UTP14AQ9BVJ6 771 aaKnown RBP29.91■■■□□ 2.38
COL9A3-213ENST00000489045 GNAI1P63096 354 aa29.9■■■□□ 2.38
COL9A3-213ENST00000489045 FKBP4Q02790 459 aaKnown RBP eCLIP29.9■■■□□ 2.38
COL9A3-213ENST00000489045 DPY19L2Q6NUT2 758 aa29.89■■■□□ 2.38
COL9A3-213ENST00000489045 DBF4Q9UBU7 674 aaPredicted RBP29.89■■■□□ 2.38
COL9A3-213ENST00000489045 HOXA10P31260 410 aaPredicted RBP29.88■■■□□ 2.37
COL9A3-213ENST00000489045 C3orf67Q6ZVT6 689 aa29.88■■■□□ 2.37
COL9A3-213ENST00000489045 RTKN2Q8IZC4 609 aa29.88■■■□□ 2.37
COL9A3-213ENST00000489045 VEGFAP15692 232 aaPredicted RBP29.87■■■□□ 2.37
COL9A3-213ENST00000489045 TCIRG1Q13488 830 aa29.87■■■□□ 2.37
COL9A3-213ENST00000489045 NLRP10Q86W26 655 aa29.87■■■□□ 2.37
COL9A3-213ENST00000489045 RNF123Q5XPI4 1314 aa29.87■■■□□ 2.37
COL9A3-213ENST00000489045 SNED1Q8TER0 1413 aa29.87■■■□□ 2.37
COL9A3-213ENST00000489045 ZNF277Q9NRM2 450 aaPredicted RBP29.86■■■□□ 2.37
COL9A3-213ENST00000489045 ANP32CO43423 234 aa29.85■■■□□ 2.37
COL9A3-213ENST00000489045 FSTL1Q12841 308 aa29.85■■■□□ 2.37
COL9A3-213ENST00000489045 RBM17Q96I25 401 aaKnown RBP29.85■■■□□ 2.37
COL9A3-213ENST00000489045 NLRP3Q96P20 1036 aa29.85■■■□□ 2.37
COL9A3-213ENST00000489045 APLP1P51693 650 aa29.84■■■□□ 2.37
COL9A3-213ENST00000489045 SLC10A5Q5PT55 438 aa29.84■■■□□ 2.37
COL9A3-213ENST00000489045 PLBD2Q8NHP8 589 aa29.84■■■□□ 2.37
COL9A3-213ENST00000489045 CRAMP1Q96RY5 1269 aa29.84■■■□□ 2.37
COL9A3-213ENST00000489045 HYPKQ9NX55 129 aa29.84■■■□□ 2.37
COL9A3-213ENST00000489045 DDX60Q8IY21 1712 aaKnown RBP29.83■■■□□ 2.37
COL9A3-213ENST00000489045 MRS2Q9HD23 443 aa29.83■■■□□ 2.37
COL9A3-213ENST00000489045 POTECB2RU33 542 aa29.82■■■□□ 2.36
COL9A3-213ENST00000489045 ELL2O00472 640 aaPredicted RBP29.82■■■□□ 2.36
COL9A3-213ENST00000489045 ANKRD13DQ6ZTN6 518 aa29.82■■■□□ 2.36
COL9A3-213ENST00000489045 SYNE4Q8N205 404 aa29.82■■■□□ 2.36
COL9A3-213ENST00000489045 TRMT112Q9UI30 125 aaKnown RBP29.82■■■□□ 2.36
COL9A3-213ENST00000489045 DDNO94850 711 aaPredicted RBP29.81■■■□□ 2.36
COL9A3-213ENST00000489045 CC2D2BQ6DHV5 1058 aa29.81■■■□□ 2.36
COL9A3-213ENST00000489045 SMC1BQ8NDV3 1235 aa29.81■■■□□ 2.36
COL9A3-213ENST00000489045 PPEF1O14829 653 aaPredicted RBP29.8■■■□□ 2.36
COL9A3-213ENST00000489045 IARSP41252 1262 aaKnown RBP29.8■■■□□ 2.36
COL9A3-213ENST00000489045 SLC51AQ86UW1 340 aa29.8■■■□□ 2.36
COL9A3-213ENST00000489045 PSMD1Q99460 953 aa29.8■■■□□ 2.36
COL9A3-213ENST00000489045 SH3TC1Q8TE82 1336 aa29.79■■■□□ 2.36
COL9A3-213ENST00000489045 HCLS1P14317 486 aaPredicted RBP29.79■■■□□ 2.36
COL9A3-213ENST00000489045 C8orf58Q8NAV2 365 aa29.79■■■□□ 2.36
COL9A3-213ENST00000489045 ZNF428Q96B54 188 aa29.79■■■□□ 2.36
COL9A3-213ENST00000489045 TAF1P21675 1872 aa29.78■■■□□ 2.36
COL9A3-213ENST00000489045 TCERG1O14776 1098 aaKnown RBP29.78■■■□□ 2.36
COL9A3-213ENST00000489045 ISCA1Q9BUE6 129 aa29.78■■■□□ 2.36
COL9A3-213ENST00000489045 SCN4AP35499 1836 aa29.78■■■□□ 2.36
COL9A3-213ENST00000489045 ABCC4O15439 1325 aa29.77■■■□□ 2.36
COL9A3-213ENST00000489045 CCDC27Q2M243 656 aa29.77■■■□□ 2.36
COL9A3-213ENST00000489045 ZNF541Q9H0D2 1346 aa29.76■■■□□ 2.36
COL9A3-213ENST00000489045 ATP5J2-PTCD1G3V325 749 aa29.76■■■□□ 2.35
COL9A3-213ENST00000489045 PHAXQ9H814 394 aaKnown RBP29.76■■■□□ 2.35
COL9A3-213ENST00000489045 WWC1Q8IX03 1113 aa29.75■■■□□ 2.35
COL9A3-213ENST00000489045 TSR2Q969E8 191 aaKnown RBP29.75■■■□□ 2.35
COL9A3-213ENST00000489045 COL4A5P29400 1685 aa29.75■■■□□ 2.35
COL9A3-213ENST00000489045 GRIPAP1Q4V328 841 aa29.74■■■□□ 2.35
COL9A3-213ENST00000489045 GOLGA2Q08379 1002 aa29.73■■■□□ 2.35
COL9A3-213ENST00000489045 RIC3Q7Z5B4 369 aa29.72■■■□□ 2.35
COL9A3-213ENST00000489045 TSPYL6Q8N831 410 aa29.72■■■□□ 2.35
COL9A3-213ENST00000489045 L3MBTL3Q96JM7 780 aaPredicted RBP29.72■■■□□ 2.35
COL9A3-213ENST00000489045 CCDC30Q5VVM6 783 aa29.71■■■□□ 2.35
COL9A3-213ENST00000489045 FAM89AQ96GI7 184 aa29.71■■■□□ 2.35
COL9A3-213ENST00000489045 ATP6V0A2Q9Y487 856 aa29.71■■■□□ 2.35
COL9A3-213ENST00000489045 FZD9O00144 591 aa29.7■■■□□ 2.35
COL9A3-213ENST00000489045 HTRA3P83110 453 aa29.7■■■□□ 2.35
COL9A3-213ENST00000489045 DDX46Q7L014 1031 aaKnown RBP29.7■■■□□ 2.35
COL9A3-213ENST00000489045 JDP2Q8WYK2 163 aa29.7■■■□□ 2.35
COL9A3-213ENST00000489045 TMX4Q9H1E5 349 aaPredicted RBP29.7■■■□□ 2.35
COL9A3-213ENST00000489045 IQCA1LA6NCM1 817 aa29.69■■■□□ 2.34
COL9A3-213ENST00000489045 TRIM28Q13263 835 aaKnown RBP29.69■■■□□ 2.34
COL9A3-213ENST00000489045 CHMP4AQ9BY43 222 aa29.69■■■□□ 2.34
COL9A3-213ENST00000489045 LRRC37AA6NMS7 1700 aa29.68■■■□□ 2.34
COL9A3-213ENST00000489045 NCBP3Q53F19 620 aaKnown RBP29.68■■■□□ 2.34
COL9A3-213ENST00000489045 DNAJC5GQ8N7S2 189 aa29.68■■■□□ 2.34
COL9A3-213ENST00000489045 IL16Q14005 1332 aa29.68■■■□□ 2.34
COL9A3-213ENST00000489045 BBOX1O75936 387 aa29.67■■■□□ 2.34
COL9A3-213ENST00000489045 GRAPQ13588 217 aa29.67■■■□□ 2.34
COL9A3-213ENST00000489045 RTL5Q5HYW3 569 aaPredicted RBP29.67■■■□□ 2.34
COL9A3-213ENST00000489045 LARGE2Q8N3Y3 721 aa29.67■■■□□ 2.34
COL9A3-213ENST00000489045 GRAPLQ8TC17 118 aaPredicted RBP29.67■■■□□ 2.34
COL9A3-213ENST00000489045 POTEIP0CG38 1075 aa29.66■■■□□ 2.34
COL9A3-213ENST00000489045 POTEJP0CG39 1038 aa29.66■■■□□ 2.34
COL9A3-213ENST00000489045 MYD88Q99836 296 aa29.66■■■□□ 2.34
COL9A3-213ENST00000489045 SP8Q8IXZ3 490 aa29.65■■■□□ 2.34
COL9A3-213ENST00000489045 TAF1DQ9H5J8 278 aaPredicted RBP29.65■■■□□ 2.34
COL9A3-213ENST00000489045 COL4A1P02462 1669 aa29.64■■■□□ 2.34
COL9A3-213ENST00000489045 EIF6P56537 245 aaKnown RBP29.64■■■□□ 2.34
COL9A3-213ENST00000489045 CHADLQ6NUI6 762 aa29.64■■■□□ 2.34
COL9A3-213ENST00000489045 GPC2Q8N158 579 aa29.64■■■□□ 2.34
COL9A3-213ENST00000489045 SALL2Q9Y467 1007 aaPredicted RBP29.64■■■□□ 2.34
COL9A3-213ENST00000489045 IRS4O14654 1257 aaPredicted RBP29.63■■■□□ 2.33
COL9A3-213ENST00000489045 PPIP5K2O43314 1243 aa29.63■■■□□ 2.33
COL9A3-213ENST00000489045 DDX58O95786 925 aaKnown RBP29.63■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms