RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 INPP5BP32019 993 aa7.34□□□□□ -1.23
RFC4-213ENST00000489028 IDH3AP50213 366 aa7.34□□□□□ -1.23
RFC4-213ENST00000489028 SPEM2Q0P670 501 aa7.34□□□□□ -1.23
RFC4-213ENST00000489028 C16orf46Q6P387 395 aa7.34□□□□□ -1.23
RFC4-213ENST00000489028 SLCO4C1Q6ZQN7 724 aa7.34□□□□□ -1.23
RFC4-213ENST00000489028 GOLGA6L1Q8N7Z2 621 aa7.34□□□□□ -1.23
RFC4-213ENST00000489028 IFT43Q96FT9 208 aa7.34□□□□□ -1.23
RFC4-213ENST00000489028 KCNH4Q9UQ05 1017 aa7.34□□□□□ -1.23
RFC4-213ENST00000489028 FAM181BA6NEQ2 426 aa7.33□□□□□ -1.24
RFC4-213ENST00000489028 OPLAHO14841 1288 aa7.33□□□□□ -1.24
RFC4-213ENST00000489028 MAP3K10Q02779 954 aa7.33□□□□□ -1.24
RFC4-213ENST00000489028 ETFBKMTQ8IXQ9 262 aa7.33□□□□□ -1.24
RFC4-213ENST00000489028 RETREG2Q8NC44 543 aa7.33□□□□□ -1.24
RFC4-213ENST00000489028 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.33□□□□□ -1.243e-6■■■■■ 108.7
RFC4-213ENST00000489028 GDF2Q9UK05 429 aaPredicted RBP7.33□□□□□ -1.24
RFC4-213ENST00000489028 PRR12Q9ULL5 1215 aa7.33□□□□□ -1.24
RFC4-213ENST00000489028 USP20Q9Y2K6 914 aa7.33□□□□□ -1.24
RFC4-213ENST00000489028 DNMT3AQ9Y6K1 912 aaPredicted RBP7.33□□□□□ -1.24
RFC4-213ENST00000489028 PTCD1O75127 700 aaKnown RBP7.32□□□□□ -1.24
RFC4-213ENST00000489028 EPXP11678 715 aa7.32□□□□□ -1.24
RFC4-213ENST00000489028 ADH6P28332 368 aa7.32□□□□□ -1.24
RFC4-213ENST00000489028 SYT9Q86SS6 491 aa7.32□□□□□ -1.24
RFC4-213ENST00000489028 TREML1Q86YW5 311 aa7.32□□□□□ -1.24
RFC4-213ENST00000489028 GALNT6Q8NCL4 622 aa7.32□□□□□ -1.24
RFC4-213ENST00000489028 EDARADDQ8WWZ3 215 aa7.32□□□□□ -1.24
RFC4-213ENST00000489028 MDFIQ99750 246 aa7.32□□□□□ -1.24
RFC4-213ENST00000489028 AVENQ9NQS1 362 aaPredicted RBP7.32□□□□□ -1.24
RFC4-213ENST00000489028 LRRC4BQ9NT99 713 aa7.32□□□□□ -1.24
RFC4-213ENST00000489028 HOXB4P17483 251 aaPredicted RBP7.31□□□□□ -1.24
RFC4-213ENST00000489028 USTQ9Y2C2 406 aa7.31□□□□□ -1.24
RFC4-213ENST00000489028 ZBTB39O15060 712 aa7.3□□□□□ -1.24
RFC4-213ENST00000489028 ARSDP51689 593 aa7.3□□□□□ -1.24
RFC4-213ENST00000489028 GSX2Q9BZM3 304 aa7.3□□□□□ -1.24
RFC4-213ENST00000489028 GSK3AP49840 483 aa7.29□□□□□ -1.24
RFC4-213ENST00000489028 NEDD1Q8NHV4 660 aa7.29□□□□□ -1.24
RFC4-213ENST00000489028 BHMTQ93088 406 aa7.29□□□□□ -1.24
RFC4-213ENST00000489028 SIN3BO75182 1162 aa7.28□□□□□ -1.24
RFC4-213ENST00000489028 BRD2P25440 801 aaKnown RBP7.28□□□□□ -1.24
RFC4-213ENST00000489028 SNRPNP63162 240 aaKnown RBP7.28□□□□□ -1.24
RFC4-213ENST00000489028 BTBD6Q96KE9 485 aa7.28□□□□□ -1.24
RFC4-213ENST00000489028 ENAMQ9NRM1 1142 aa7.28□□□□□ -1.24
RFC4-213ENST00000489028 RTCBQ9Y3I0 505 aaKnown RBP7.28□□□□□ -1.24
RFC4-213ENST00000489028 CNTNAP5Q8WYK1 1306 aa7.27□□□□□ -1.24
RFC4-213ENST00000489028 MTMR3Q13615 1198 aa7.27□□□□□ -1.25
RFC4-213ENST00000489028 RGL4Q8IZJ4 473 aa7.27□□□□□ -1.25
RFC4-213ENST00000489028 GTF3C2Q8WUA4 911 aaPredicted RBP7.27□□□□□ -1.25
RFC4-213ENST00000489028 ZFATQ9P243 1243 aa7.27□□□□□ -1.25
RFC4-213ENST00000489028 STIM2Q9P246 746 aa7.27□□□□□ -1.25
RFC4-213ENST00000489028 KCNMB2Q9Y691 235 aa7.27□□□□□ -1.25
RFC4-213ENST00000489028 ADARB2-AS1A8MUL3 147 aa7.26□□□□□ -1.25
RFC4-213ENST00000489028 EPB42P16452 691 aa7.26□□□□□ -1.25
RFC4-213ENST00000489028 NFKB1P19838 968 aa7.26□□□□□ -1.25
RFC4-213ENST00000489028 MARSP56192 900 aaKnown RBP7.26□□□□□ -1.25
RFC4-213ENST00000489028 CCINQ13939 588 aa7.26□□□□□ -1.25
RFC4-213ENST00000489028 TRIP4Q15650 581 aaPredicted RBP7.26□□□□□ -1.25
RFC4-213ENST00000489028 KRT25Q7Z3Z0 450 aa7.26□□□□□ -1.25
RFC4-213ENST00000489028 HELQQ8TDG4 1101 aa7.26□□□□□ -1.25
RFC4-213ENST00000489028 TNFRSF25Q93038 417 aa7.26□□□□□ -1.25
RFC4-213ENST00000489028 ELOA3CA0A087WX78 387 aaPredicted RBP7.25□□□□□ -1.25
RFC4-213ENST00000489028 ELOA3DA6NLF2 546 aaPredicted RBP7.25□□□□□ -1.25
RFC4-213ENST00000489028 ZAP70P43403 619 aa7.25□□□□□ -1.25
RFC4-213ENST00000489028 ELOA3BQ3SY89 546 aa7.25□□□□□ -1.25
RFC4-213ENST00000489028 CHSY3Q70JA7 882 aa7.25□□□□□ -1.25
RFC4-213ENST00000489028 ATCAYQ86WG3 371 aa7.25□□□□□ -1.25
RFC4-213ENST00000489028 CMTR1Q8N1G2 835 aaKnown RBP7.25□□□□□ -1.25
RFC4-213ENST00000489028 ELOA3Q8NG57 546 aa7.25□□□□□ -1.25
RFC4-213ENST00000489028 STARD13Q9Y3M8 1113 aa7.25□□□□□ -1.25
RFC4-213ENST00000489028 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.25□□□□□ -1.25
RFC4-213ENST00000489028 SASH3O75995 380 aa7.24□□□□□ -1.25
RFC4-213ENST00000489028 AMPD1P23109 780 aa7.24□□□□□ -1.25
RFC4-213ENST00000489028 TARSP26639 723 aaKnown RBP7.24□□□□□ -1.25
RFC4-213ENST00000489028 ADH7P40394 386 aa7.24□□□□□ -1.25
RFC4-213ENST00000489028 DGKGP49619 791 aa7.24□□□□□ -1.25
RFC4-213ENST00000489028 XYLBO75191 536 aa7.23□□□□□ -1.25
RFC4-213ENST00000489028 EGFRP00533 1210 aa7.23□□□□□ -1.25
RFC4-213ENST00000489028 MPSTP25325 297 aa7.23□□□□□ -1.25
RFC4-213ENST00000489028 IRS1P35568 1242 aa7.23□□□□□ -1.25
RFC4-213ENST00000489028 TBC1D8BQ0IIM8 1120 aa7.23□□□□□ -1.25
RFC4-213ENST00000489028 KCNMA1Q12791 1236 aa7.23□□□□□ -1.25
RFC4-213ENST00000489028 ZNF211Q13398 564 aaPredicted RBP7.23□□□□□ -1.25
RFC4-213ENST00000489028 NEUROD1Q13562 356 aa7.23□□□□□ -1.25
RFC4-213ENST00000489028 LINC00114Q6XXX2 140 aa7.23□□□□□ -1.25
RFC4-213ENST00000489028 GPR152Q8TDT2 470 aa7.23□□□□□ -1.25
RFC4-213ENST00000489028 RRAGCQ9HB90 399 aa7.23□□□□□ -1.25
RFC4-213ENST00000489028 ANO2Q9NQ90 1003 aa7.23□□□□□ -1.25
RFC4-213ENST00000489028 ABTB2Q8N961 1025 aa7.22□□□□□ -1.25
RFC4-213ENST00000489028 SCARF2Q96GP6 870 aaPredicted RBP7.22□□□□□ -1.25
RFC4-213ENST00000489028 PNMA5Q96PV4 448 aa7.22□□□□□ -1.25
RFC4-213ENST00000489028 UBE2OQ9C0C9 1292 aaKnown RBP7.22□□□□□ -1.25
RFC4-213ENST00000489028 IGFLR1Q9H665 355 aa7.22□□□□□ -1.25
RFC4-213ENST00000489028 C11orf16Q9NQ32 467 aa7.22□□□□□ -1.25
RFC4-213ENST00000489028 DNAJB12Q9NXW2 375 aaKnown RBP7.22□□□□□ -1.25
RFC4-213ENST00000489028 NAGPAQ9UK23 515 aa7.22□□□□□ -1.25
RFC4-213ENST00000489028 SLC6A14Q9UN76 642 aa7.22□□□□□ -1.25
RFC4-213ENST00000489028 MAP3K6O95382 1288 aa7.21□□□□□ -1.26
RFC4-213ENST00000489028 ALBP02768 609 aa7.21□□□□□ -1.26
RFC4-213ENST00000489028 RARAP10276 462 aa7.21□□□□□ -1.26
RFC4-213ENST00000489028 SERPINB4P48594 390 aa7.21□□□□□ -1.26
RFC4-213ENST00000489028 C8orf86Q6ZUL3 223 aa7.21□□□□□ -1.26
RFC4-213ENST00000489028 EFCC1Q9HA90 598 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms