RNA–Protein interactions for RNA: ENST00000488809.2

PTCH1-211, Transcript of patched 1, humanhuman

TSL 3

Gene PTCH1, Length 301 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-211ENST00000488809 LARGE2Q8N3Y3 721 aa8.68□□□□□ -1.02
PTCH1-211ENST00000488809 GPR101Q96P66 508 aaPredicted RBP8.68□□□□□ -1.02
PTCH1-211ENST00000488809 RIC1Q4ADV7 1423 aa8.68□□□□□ -1.02
PTCH1-211ENST00000488809 LTBP1Q14766 1721 aa8.68□□□□□ -1.02
PTCH1-211ENST00000488809 PER1O15534 1290 aaPredicted RBP8.67□□□□□ -1.02
PTCH1-211ENST00000488809 KCNQ3O43525 872 aa8.67□□□□□ -1.02
PTCH1-211ENST00000488809 NEFMP07197 916 aa8.67□□□□□ -1.02
PTCH1-211ENST00000488809 MAP2K2P36507 400 aa8.67□□□□□ -1.02
PTCH1-211ENST00000488809 CRY2Q49AN0 593 aa8.67□□□□□ -1.02
PTCH1-211ENST00000488809 KIF6Q6ZMV9 814 aa8.67□□□□□ -1.02
PTCH1-211ENST00000488809 KDM3BQ7LBC6 1761 aa8.67□□□□□ -1.02
PTCH1-211ENST00000488809 NIM1KQ8IY84 436 aa8.67□□□□□ -1.02
PTCH1-211ENST00000488809 IBTKQ9P2D0 1353 aaPredicted RBP8.67□□□□□ -1.02
PTCH1-211ENST00000488809 PCDH10Q9P2E7 1040 aa8.67□□□□□ -1.02
PTCH1-211ENST00000488809 AKAP11Q9UKA4 1901 aa8.66□□□□□ -1.02
PTCH1-211ENST00000488809 SNED1Q8TER0 1413 aa8.66□□□□□ -1.02
PTCH1-211ENST00000488809 PRAMEF22A3QJZ6 481 aa8.66□□□□□ -1.02
PTCH1-211ENST00000488809 ERVV-1B6SEH8 477 aa8.66□□□□□ -1.02
PTCH1-211ENST00000488809 HTATSF1O43719 755 aaKnown RBP8.66□□□□□ -1.02
PTCH1-211ENST00000488809 CYP4F22Q6NT55 531 aa8.66□□□□□ -1.02
PTCH1-211ENST00000488809 OLFM4Q6UX06 510 aa8.66□□□□□ -1.02
PTCH1-211ENST00000488809 SUPT20HQ8NEM7 779 aa8.66□□□□□ -1.02
PTCH1-211ENST00000488809 PNISRQ8TF01 805 aaKnown RBP8.66□□□□□ -1.02
PTCH1-211ENST00000488809 RBM17Q96I25 401 aaKnown RBP8.66□□□□□ -1.02
PTCH1-211ENST00000488809 CFAP44Q96MT7 982 aa8.66□□□□□ -1.02
PTCH1-211ENST00000488809 RSPH6AQ9H0K4 717 aa8.66□□□□□ -1.02
PTCH1-211ENST00000488809 VPS33BQ9H267 617 aa8.66□□□□□ -1.02
PTCH1-211ENST00000488809 ADARB2Q9NS39 739 aaKnown RBP8.66□□□□□ -1.02
PTCH1-211ENST00000488809 TLL2Q9Y6L7 1015 aa8.66□□□□□ -1.02
PTCH1-211ENST00000488809 ANKRD36CQ5JPF3 1778 aa8.66□□□□□ -1.02
PTCH1-211ENST00000488809 ABCC12Q96J65 1359 aa8.65□□□□□ -1.02
PTCH1-211ENST00000488809 MAP3K15Q6ZN16 1313 aa8.65□□□□□ -1.02
PTCH1-211ENST00000488809 CDHR2Q9BYE9 1310 aa8.65□□□□□ -1.02
PTCH1-211ENST00000488809 NBPF26B4DH59 902 aa8.65□□□□□ -1.02
PTCH1-211ENST00000488809 PPEF1O14829 653 aaPredicted RBP8.65□□□□□ -1.02
PTCH1-211ENST00000488809 HOXA10P31260 410 aaPredicted RBP8.65□□□□□ -1.02
PTCH1-211ENST00000488809 RGS19P49795 217 aa8.65□□□□□ -1.02
PTCH1-211ENST00000488809 SCNN1DP51172 638 aa8.65□□□□□ -1.02
PTCH1-211ENST00000488809 CNGB1Q14028 1251 aaPredicted RBP8.65□□□□□ -1.02
PTCH1-211ENST00000488809 HLFQ16534 295 aa8.65□□□□□ -1.02
PTCH1-211ENST00000488809 NBPF10Q6P3W6 841 aaKnown RBP8.65□□□□□ -1.02
PTCH1-211ENST00000488809 MCM10Q7L590 875 aa8.65□□□□□ -1.02
PTCH1-211ENST00000488809 NBPF15Q8N660 670 aa8.65□□□□□ -1.02
PTCH1-211ENST00000488809 HHIPL1Q96JK4 782 aa8.65□□□□□ -1.02
PTCH1-211ENST00000488809 PHACTR3Q96KR7 559 aa8.65□□□□□ -1.02
PTCH1-211ENST00000488809 CRAMP1Q96RY5 1269 aa8.65□□□□□ -1.02
PTCH1-211ENST00000488809 LAMB2P55268 1798 aa8.64□□□□□ -1.03
PTCH1-211ENST00000488809 PPIP5K2O43314 1243 aa8.64□□□□□ -1.03
PTCH1-211ENST00000488809 U2AF1L5P0DN76 240 aaPredicted RBP8.64□□□□□ -1.03
PTCH1-211ENST00000488809 EPS15P42566 896 aa8.64□□□□□ -1.03
PTCH1-211ENST00000488809 BRPF1P55201 1214 aaPredicted RBP8.64□□□□□ -1.03
PTCH1-211ENST00000488809 U2AF1Q01081 240 aaKnown RBP eCLIP8.64□□□□□ -1.03
PTCH1-211ENST00000488809 TAF7Q15545 349 aaPredicted RBP8.64□□□□□ -1.03
PTCH1-211ENST00000488809 PPP1R42Q7Z4L9 355 aa8.64□□□□□ -1.03
PTCH1-211ENST00000488809 NUTM1Q86Y26 1132 aa8.64□□□□□ -1.03
PTCH1-211ENST00000488809 NLRP3Q96P20 1036 aa8.64□□□□□ -1.03
PTCH1-211ENST00000488809 GPRC5DQ9NZD1 345 aa8.64□□□□□ -1.03
PTCH1-211ENST00000488809 COL4A5P29400 1685 aa8.64□□□□□ -1.03
PTCH1-211ENST00000488809 POLR2AP24928 1970 aaKnown RBP8.63□□□□□ -1.03
PTCH1-211ENST00000488809 CELF2O95319 508 aaKnown RBP8.63□□□□□ -1.03
PTCH1-211ENST00000488809 PARP10Q53GL7 1025 aa8.63□□□□□ -1.03
PTCH1-211ENST00000488809 CST9Q5W186 159 aa8.63□□□□□ -1.03
PTCH1-211ENST00000488809 SAPCD2Q86UD0 394 aa8.63□□□□□ -1.03
PTCH1-211ENST00000488809 NGEFQ8N5V2 710 aa8.63□□□□□ -1.03
PTCH1-211ENST00000488809 CCER1Q8TC90 406 aaPredicted RBP8.63□□□□□ -1.03
PTCH1-211ENST00000488809 DDX60Q8IY21 1712 aaKnown RBP8.63□□□□□ -1.03
PTCH1-211ENST00000488809 ERBB4Q15303 1308 aa8.62□□□□□ -1.03
PTCH1-211ENST00000488809 TRAF5O00463 557 aa8.62□□□□□ -1.03
PTCH1-211ENST00000488809 NOGQ13253 232 aa8.62□□□□□ -1.03
PTCH1-211ENST00000488809 TNIP1Q15025 636 aa8.62□□□□□ -1.03
PTCH1-211ENST00000488809 ZC3H15Q8WU90 426 aaKnown RBP8.62□□□□□ -1.03
PTCH1-211ENST00000488809 BCL2L13Q9BXK5 485 aa8.62□□□□□ -1.03
PTCH1-211ENST00000488809 MCOLN1Q9GZU1 580 aa8.62□□□□□ -1.03
PTCH1-211ENST00000488809 ZNRF3Q9ULT6 936 aa8.62□□□□□ -1.03
PTCH1-211ENST00000488809 TCERG1O14776 1098 aaKnown RBP8.61□□□□□ -1.03
PTCH1-211ENST00000488809 AOC2O75106 756 aa8.61□□□□□ -1.03
PTCH1-211ENST00000488809 MYL6BP14649 208 aa8.61□□□□□ -1.03
PTCH1-211ENST00000488809 GPTP24298 496 aa8.61□□□□□ -1.03
PTCH1-211ENST00000488809 DGKZQ13574 1117 aa8.61□□□□□ -1.03
PTCH1-211ENST00000488809 DCTN1Q14203 1278 aa8.61□□□□□ -1.03
PTCH1-211ENST00000488809 AOC3Q16853 763 aa8.61□□□□□ -1.03
PTCH1-211ENST00000488809 CIAPIN1Q6FI81 312 aa8.61□□□□□ -1.03
PTCH1-211ENST00000488809 DPP8Q6V1X1 898 aaPredicted RBP8.61□□□□□ -1.03
PTCH1-211ENST00000488809 GIGYF2Q6Y7W6 1299 aaKnown RBP8.61□□□□□ -1.03
PTCH1-211ENST00000488809 CDC37L1Q7L3B6 337 aa8.61□□□□□ -1.03
PTCH1-211ENST00000488809 ZBTB3Q9H5J0 574 aa8.61□□□□□ -1.03
PTCH1-211ENST00000488809 ZNF408Q9H9D4 720 aa8.61□□□□□ -1.03
PTCH1-211ENST00000488809 TSKSQ9UJT2 592 aa8.61□□□□□ -1.03
PTCH1-211ENST00000488809 RRP7AQ9Y3A4 280 aaKnown RBP8.61□□□□□ -1.03
PTCH1-211ENST00000488809 ATP6V0A2Q9Y487 856 aa8.61□□□□□ -1.03
PTCH1-211ENST00000488809 PDE4DIPQ5VU43 2346 aa8.61□□□□□ -1.03
PTCH1-211ENST00000488809 UBN2Q6ZU65 1347 aa8.6□□□□□ -1.03
PTCH1-211ENST00000488809 H7C1D1 291 aa8.6□□□□□ -1.03
PTCH1-211ENST00000488809 NTSR2O95665 410 aa8.6□□□□□ -1.03
PTCH1-211ENST00000488809 FMR1Q06787 632 aaKnown RBP eCLIP8.6□□□□□ -1.03
PTCH1-211ENST00000488809 CXCL9Q07325 125 aa8.6□□□□□ -1.03
PTCH1-211ENST00000488809 HSP90AB3PQ58FF7 597 aa8.6□□□□□ -1.03
PTCH1-211ENST00000488809 SUSD4Q5VX71 490 aa8.6□□□□□ -1.03
PTCH1-211ENST00000488809 ZNF34Q8IZ26 560 aa8.6□□□□□ -1.03
PTCH1-211ENST00000488809 PGAP2Q9UHJ9 254 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms