RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 SENP3-EIF4A1A0A087X0R7 540 aa11.45□□□□□ -0.58
COL12A1-208ENST00000486533 TAF7Q15545 349 aaPredicted RBP11.45□□□□□ -0.58
COL12A1-208ENST00000486533 DUSP27Q5VZP5 1158 aa11.45□□□□□ -0.58
COL12A1-208ENST00000486533 TBC1D9BQ66K14 1250 aa11.45□□□□□ -0.58
COL12A1-208ENST00000486533 PLEKHF1Q96S99 279 aa11.45□□□□□ -0.58
COL12A1-208ENST00000486533 MIS18AQ9NYP9 233 aa11.45□□□□□ -0.58
COL12A1-208ENST00000486533 NPHP1O15259 732 aa11.44□□□□□ -0.58
COL12A1-208ENST00000486533 PYGBP11216 843 aa11.44□□□□□ -0.58
COL12A1-208ENST00000486533 SLFN5Q08AF3 891 aa11.44□□□□□ -0.58
COL12A1-208ENST00000486533 NFE2L2Q16236 605 aa11.44□□□□□ -0.58
COL12A1-208ENST00000486533 DZIP3Q86Y13 1208 aaKnown RBP11.44□□□□□ -0.58
COL12A1-208ENST00000486533 CARMIL3Q8ND23 1372 aa11.43□□□□□ -0.58
COL12A1-208ENST00000486533 DEKP35659 375 aaKnown RBP11.43□□□□□ -0.58
COL12A1-208ENST00000486533 THUMPD2Q9BTF0 503 aaKnown RBP11.43□□□□□ -0.58
COL12A1-208ENST00000486533 TRIM35Q9UPQ4 493 aa11.43□□□□□ -0.58
COL12A1-208ENST00000486533 BCORQ6W2J9 1755 aa11.43□□□□□ -0.58
COL12A1-208ENST00000486533 CAMTA2O94983 1202 aa11.42□□□□□ -0.58
COL12A1-208ENST00000486533 C2CD5Q86YS7 1000 aa11.42□□□□□ -0.58
COL12A1-208ENST00000486533 SETDB2Q96T68 719 aa11.42□□□□□ -0.58
COL12A1-208ENST00000486533 KDM3BQ7LBC6 1761 aa11.42□□□□□ -0.58
COL12A1-208ENST00000486533 DLEC1Q9Y238 1755 aa11.42□□□□□ -0.58
COL12A1-208ENST00000486533 KDM2BQ8NHM5 1336 aa11.42□□□□□ -0.58
COL12A1-208ENST00000486533 LAMB4A4D0S4 1761 aa11.41□□□□□ -0.58
COL12A1-208ENST00000486533 H0YIN7 160 aa11.41□□□□□ -0.58
COL12A1-208ENST00000486533 GSE1Q14687 1217 aa11.41□□□□□ -0.58
COL12A1-208ENST00000486533 C9orf131Q5VYM1 1079 aa11.41□□□□□ -0.58
COL12A1-208ENST00000486533 TRMT2AQ8IZ69 625 aaKnown RBP11.41□□□□□ -0.58
COL12A1-208ENST00000486533 CCDC24Q8N4L8 307 aa11.41□□□□□ -0.58
COL12A1-208ENST00000486533 PDE3AQ14432 1141 aa11.41□□□□□ -0.58
COL12A1-208ENST00000486533 FAM161AQ3B820 660 aa11.41□□□□□ -0.58
COL12A1-208ENST00000486533 IER5LQ5T953 404 aa11.41□□□□□ -0.58
COL12A1-208ENST00000486533 PRR5LQ6MZQ0 368 aa11.41□□□□□ -0.58
COL12A1-208ENST00000486533 TTLL6Q8N841 843 aa11.41□□□□□ -0.58
COL12A1-208ENST00000486533 CNBD1Q8NA66 436 aa11.41□□□□□ -0.58
COL12A1-208ENST00000486533 ZNF652Q9Y2D9 606 aa11.41□□□□□ -0.58
COL12A1-208ENST00000486533 ANKRD31Q8N7Z5 1873 aa11.41□□□□□ -0.58
COL12A1-208ENST00000486533 NBPF26B4DH59 902 aa11.4□□□□□ -0.58
COL12A1-208ENST00000486533 PDE6BP35913 854 aa11.4□□□□□ -0.58
COL12A1-208ENST00000486533 NBPF10Q6P3W6 841 aaKnown RBP11.4□□□□□ -0.58
COL12A1-208ENST00000486533 IFNLR1Q8IU57 520 aaPredicted RBP11.4□□□□□ -0.58
COL12A1-208ENST00000486533 NBPF15Q8N660 670 aa11.4□□□□□ -0.58
COL12A1-208ENST00000486533 TMEM106CQ9BVX2 250 aa11.4□□□□□ -0.58
COL12A1-208ENST00000486533 RNF181Q9P0P0 153 aa11.4□□□□□ -0.58
COL12A1-208ENST00000486533 RIPK4P57078 832 aa11.39□□□□□ -0.59
COL12A1-208ENST00000486533 EIF4A1P60842 406 aaKnown RBP11.39□□□□□ -0.59
COL12A1-208ENST00000486533 ST5P78524 1137 aa11.39□□□□□ -0.59
COL12A1-208ENST00000486533 NBR1Q14596 966 aa11.39□□□□□ -0.59
COL12A1-208ENST00000486533 MAMSTRQ6ZN01 415 aa11.39□□□□□ -0.59
COL12A1-208ENST00000486533 NBPF5PQ86XG9 351 aaPredicted RBP11.39□□□□□ -0.59
COL12A1-208ENST00000486533 ZNF622Q969S3 477 aaKnown RBP eCLIP11.39□□□□□ -0.59
COL12A1-208ENST00000486533 BRIP1Q9BX63 1249 aa11.39□□□□□ -0.59
COL12A1-208ENST00000486533 COLQQ9Y215 455 aaPredicted RBP11.39□□□□□ -0.59
COL12A1-208ENST00000486533 COL11A2P13942 1736 aaPredicted RBP11.39□□□□□ -0.59
COL12A1-208ENST00000486533 PLIN1O60240 522 aa11.38□□□□□ -0.59
COL12A1-208ENST00000486533 RASSF7Q02833 373 aa11.38□□□□□ -0.59
COL12A1-208ENST00000486533 CLEC4GQ6UXB4 293 aa11.38□□□□□ -0.59
COL12A1-208ENST00000486533 CCDC146Q8IYE0 955 aa11.38□□□□□ -0.59
COL12A1-208ENST00000486533 TSPYL4Q9UJ04 414 aa11.38□□□□□ -0.59
COL12A1-208ENST00000486533 SBF1O95248 1867 aa11.38□□□□□ -0.59
COL12A1-208ENST00000486533 LMOD3Q0VAK6 560 aa11.37□□□□□ -0.59
COL12A1-208ENST00000486533 NEUROD2Q15784 382 aa11.37□□□□□ -0.59
COL12A1-208ENST00000486533 PDZRN3Q9UPQ7 1066 aa11.37□□□□□ -0.59
COL12A1-208ENST00000486533 NIP7Q9Y221 180 aaKnown RBP eCLIP11.37□□□□□ -0.59
COL12A1-208ENST00000486533 CACNA1SQ13698 1873 aa11.37□□□□□ -0.59
COL12A1-208ENST00000486533 FAM177BA6PVY3 158 aa11.37□□□□□ -0.59
COL12A1-208ENST00000486533 KIF3CO14782 793 aa11.37□□□□□ -0.59
COL12A1-208ENST00000486533 TMPOP42166 694 aaKnown RBP11.37□□□□□ -0.59
COL12A1-208ENST00000486533 RUNDC1Q96C34 613 aa11.37□□□□□ -0.59
COL12A1-208ENST00000486533 RRP7AQ9Y3A4 280 aaKnown RBP11.37□□□□□ -0.59
COL12A1-208ENST00000486533 APAF1O14727 1248 aa11.36□□□□□ -0.59
COL12A1-208ENST00000486533 CT47B1P0C2W7 299 aaPredicted RBP11.36□□□□□ -0.59
COL12A1-208ENST00000486533 MYL6BP14649 208 aa11.36□□□□□ -0.59
COL12A1-208ENST00000486533 CCDC27Q2M243 656 aa11.36□□□□□ -0.59
COL12A1-208ENST00000486533 WDR63Q8IWG1 891 aa11.36□□□□□ -0.59
COL12A1-208ENST00000486533 NMRK2Q9NPI5 230 aa11.36□□□□□ -0.59
COL12A1-208ENST00000486533 CCDC88AQ3V6T2 1871 aa11.35□□□□□ -0.59
COL12A1-208ENST00000486533 C21orf2O43822 256 aa11.35□□□□□ -0.59
COL12A1-208ENST00000486533 SEC24BO95487 1268 aa11.35□□□□□ -0.59
COL12A1-208ENST00000486533 LMNB1P20700 586 aa11.35□□□□□ -0.59
COL12A1-208ENST00000486533 HLFQ16534 295 aa11.35□□□□□ -0.59
COL12A1-208ENST00000486533 TPTE2Q6XPS3 522 aa11.35□□□□□ -0.59
COL12A1-208ENST00000486533 KIF6Q6ZMV9 814 aa11.35□□□□□ -0.59
COL12A1-208ENST00000486533 PCDHB8Q9UN66 801 aa11.35□□□□□ -0.59
COL12A1-208ENST00000486533 RGL2O15211 777 aa11.34□□□□□ -0.59
COL12A1-208ENST00000486533 SRGNP10124 158 aa11.34□□□□□ -0.59
COL12A1-208ENST00000486533 CHRM1P11229 460 aaPredicted RBP11.34□□□□□ -0.59
COL12A1-208ENST00000486533 GTF2E1P29083 439 aaPredicted RBP11.34□□□□□ -0.59
COL12A1-208ENST00000486533 SPOCK2Q92563 424 aa11.34□□□□□ -0.59
COL12A1-208ENST00000486533 MASTLQ96GX5 879 aa11.34□□□□□ -0.59
COL12A1-208ENST00000486533 MYH16Q9H6N6 1097 aa11.34□□□□□ -0.59
COL12A1-208ENST00000486533 NUP98P52948 1817 aa11.34□□□□□ -0.59
COL12A1-208ENST00000486533 MAP3K15Q6ZN16 1313 aa11.33□□□□□ -0.6
COL12A1-208ENST00000486533 SLX4Q8IY92 1834 aa11.33□□□□□ -0.6
COL12A1-208ENST00000486533 NFKBIEO00221 500 aa11.33□□□□□ -0.6
COL12A1-208ENST00000486533 EIF2S2P20042 333 aaKnown RBP11.33□□□□□ -0.6
COL12A1-208ENST00000486533 STYK1Q6J9G0 422 aa11.33□□□□□ -0.6
COL12A1-208ENST00000486533 PRPF40BQ6NWY9 871 aaKnown RBP11.33□□□□□ -0.6
COL12A1-208ENST00000486533 TTLL7Q6ZT98 887 aa11.33□□□□□ -0.6
COL12A1-208ENST00000486533 C16orf71Q8IYS4 520 aaPredicted RBP11.33□□□□□ -0.6
COL12A1-208ENST00000486533 CNKSR1Q969H4 720 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms