RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	MAP2K1	Q02750	393 aa	Predicted RBP	14.08	□□□□□ -0.16
HMGN1-215	ENST00000485550	MLLT1	Q03111	559 aa	Predicted RBP	14.08	□□□□□ -0.16
HMGN1-215	ENST00000485550	C7orf43	Q8WVR3	580 aa		14.08	□□□□□ -0.16
HMGN1-215	ENST00000485550	USP16	Q9Y5T5	823 aa		14.08	□□□□□ -0.16
HMGN1-215	ENST00000485550	PDE4DIP	Q5VU43	2346 aa		14.08	□□□□□ -0.16
HMGN1-215	ENST00000485550	THSD7B	Q9C0I4	1608 aa		14.08	□□□□□ -0.16
HMGN1-215	ENST00000485550	LTBP1	Q14766	1721 aa		14.07	□□□□□ -0.16
HMGN1-215	ENST00000485550	IL6ST	P40189	918 aa	Predicted RBP	14.07	□□□□□ -0.16
HMGN1-215	ENST00000485550	FKBP4	Q02790	459 aa	Known RBP eCLIP	14.07	□□□□□ -0.16
HMGN1-215	ENST00000485550	GRM1	Q13255	1194 aa		14.07	□□□□□ -0.16
HMGN1-215	ENST00000485550	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	14.07	□□□□□ -0.16
HMGN1-215	ENST00000485550	NPM2	Q86SE8	214 aa	Known RBP	14.07	□□□□□ -0.16
HMGN1-215	ENST00000485550	CEMIP	Q8WUJ3	1361 aa		14.07	□□□□□ -0.16
HMGN1-215	ENST00000485550	HAX1	O00165	279 aa		14.06	□□□□□ -0.16
HMGN1-215	ENST00000485550	FMR1	Q06787	632 aa	Known RBP eCLIP	14.06	□□□□□ -0.16	2e-6	■□□□□ 10.3
HMGN1-215	ENST00000485550	PNMA8A	Q86V59	439 aa	Predicted RBP	14.06	□□□□□ -0.16
HMGN1-215	ENST00000485550	MIS18A	Q9NYP9	233 aa		14.06	□□□□□ -0.16
HMGN1-215	ENST00000485550	NBPF5P	Q86XG9	351 aa	Predicted RBP	14.05	□□□□□ -0.16
HMGN1-215	ENST00000485550	DZIP3	Q86Y13	1208 aa	Known RBP	14.05	□□□□□ -0.16
HMGN1-215	ENST00000485550	TSKS	Q9UJT2	592 aa		14.05	□□□□□ -0.16
HMGN1-215	ENST00000485550	SSUH2	Q9Y2M2	353 aa		14.05	□□□□□ -0.16
HMGN1-215	ENST00000485550	NPR1	P16066	1061 aa		14.04	□□□□□ -0.16
HMGN1-215	ENST00000485550	CAPNS2	Q96L46	248 aa		14.04	□□□□□ -0.16
HMGN1-215	ENST00000485550	DDX21	Q9NR30	783 aa	Known RBP eCLIP	14.04	□□□□□ -0.16
HMGN1-215	ENST00000485550	FAM177B	A6PVY3	158 aa		14.03	□□□□□ -0.16
HMGN1-215	ENST00000485550	FZD9	O00144	591 aa		14.03	□□□□□ -0.16
HMGN1-215	ENST00000485550	SNRPA1	P09661	255 aa	Known RBP	14.03	□□□□□ -0.16
HMGN1-215	ENST00000485550	IARS	P41252	1262 aa	Known RBP	14.03	□□□□□ -0.16
HMGN1-215	ENST00000485550	RGS19	P49795	217 aa		14.03	□□□□□ -0.16
HMGN1-215	ENST00000485550	CYP4F22	Q6NT55	531 aa		14.03	□□□□□ -0.16
HMGN1-215	ENST00000485550	SYNE4	Q8N205	404 aa		14.03	□□□□□ -0.16
HMGN1-215	ENST00000485550	CFAP44	Q96MT7	982 aa		14.03	□□□□□ -0.16
HMGN1-215	ENST00000485550	BEGAIN	Q9BUH8	593 aa		14.03	□□□□□ -0.16
HMGN1-215	ENST00000485550	NUP98	P52948	1817 aa		14.03	□□□□□ -0.16
HMGN1-215	ENST00000485550	HTATSF1	O43719	755 aa	Known RBP	14.02	□□□□□ -0.17
HMGN1-215	ENST00000485550	NEFM	P07197	916 aa		14.02	□□□□□ -0.17
HMGN1-215	ENST00000485550	TAF7	Q15545	349 aa	Predicted RBP	14.02	□□□□□ -0.17
HMGN1-215	ENST00000485550	GJA3	Q9Y6H8	435 aa		14.02	□□□□□ -0.17
HMGN1-215	ENST00000485550	COL4A5	P29400	1685 aa		14.01	□□□□□ -0.17
HMGN1-215	ENST00000485550	RTKN2	Q8IZC4	609 aa		14.01	□□□□□ -0.17
HMGN1-215	ENST00000485550	GPC2	Q8N158	579 aa		14.01	□□□□□ -0.17
HMGN1-215	ENST00000485550	GPR101	Q96P66	508 aa	Predicted RBP	14.01	□□□□□ -0.17
HMGN1-215	ENST00000485550	PCDH10	Q9P2E7	1040 aa		14.01	□□□□□ -0.17
HMGN1-215	ENST00000485550	ECE1	P42892	770 aa		14	□□□□□ -0.17
HMGN1-215	ENST00000485550	SPDYE1	Q8NFV5	336 aa	Predicted RBP	14	□□□□□ -0.17
HMGN1-215	ENST00000485550	THUMPD2	Q9BTF0	503 aa	Known RBP	14	□□□□□ -0.17
HMGN1-215	ENST00000485550	NIP7	Q9Y221	180 aa	Known RBP eCLIP	14	□□□□□ -0.17
HMGN1-215	ENST00000485550	KLRG2	A4D1S0	409 aa	Predicted RBP	13.99	□□□□□ -0.17
HMGN1-215	ENST00000485550	NBPF26	B4DH59	902 aa		13.99	□□□□□ -0.17
HMGN1-215	ENST00000485550	TRAF5	O00463	557 aa		13.99	□□□□□ -0.17
HMGN1-215	ENST00000485550	AOC2	O75106	756 aa		13.99	□□□□□ -0.17
HMGN1-215	ENST00000485550	LMOD1	P29536	600 aa	Predicted RBP	13.99	□□□□□ -0.17
HMGN1-215	ENST00000485550	EPS15	P42566	896 aa		13.99	□□□□□ -0.17
HMGN1-215	ENST00000485550	NBPF10	Q6P3W6	841 aa	Known RBP	13.99	□□□□□ -0.17
HMGN1-215	ENST00000485550	CLEC4G	Q6UXB4	293 aa		13.99	□□□□□ -0.17
HMGN1-215	ENST00000485550	NGEF	Q8N5V2	710 aa		13.99	□□□□□ -0.17
HMGN1-215	ENST00000485550	NBPF15	Q8N660	670 aa		13.99	□□□□□ -0.17
HMGN1-215	ENST00000485550	JDP2	Q8WYK2	163 aa		13.99	□□□□□ -0.17
HMGN1-215	ENST00000485550	PLEKHF1	Q96S99	279 aa		13.99	□□□□□ -0.17
HMGN1-215	ENST00000485550	POLR2A	P24928	1970 aa	Known RBP	13.99	□□□□□ -0.17
HMGN1-215	ENST00000485550	TNRC18	O15417	2968 aa	Predicted RBP	13.99	□□□□□ -0.17
HMGN1-215	ENST00000485550	EIF6	P56537	245 aa	Known RBP	13.98	□□□□□ -0.17
HMGN1-215	ENST00000485550	CST9	Q5W186	159 aa		13.98	□□□□□ -0.17
HMGN1-215	ENST00000485550	TPTE2	Q6XPS3	522 aa		13.98	□□□□□ -0.17
HMGN1-215	ENST00000485550	MCOLN1	Q9GZU1	580 aa		13.98	□□□□□ -0.17
HMGN1-215	ENST00000485550	ZNF652	Q9Y2D9	606 aa		13.98	□□□□□ -0.17
HMGN1-215	ENST00000485550	SNED1	Q8TER0	1413 aa		13.98	□□□□□ -0.17
HMGN1-215	ENST00000485550	ALDH1B1	P30837	517 aa		13.97	□□□□□ -0.17
HMGN1-215	ENST00000485550	SCNN1D	P51172	638 aa		13.97	□□□□□ -0.17
HMGN1-215	ENST00000485550	DDX10	Q13206	875 aa	Known RBP	13.97	□□□□□ -0.17
HMGN1-215	ENST00000485550	NFE2L2	Q16236	605 aa		13.97	□□□□□ -0.17
HMGN1-215	ENST00000485550	TLL2	Q9Y6L7	1015 aa		13.97	□□□□□ -0.17
HMGN1-215	ENST00000485550	MAPK8IP3	Q9UPT6	1336 aa		13.96	□□□□□ -0.17
HMGN1-215	ENST00000485550	GTF2E1	P29083	439 aa	Predicted RBP	13.96	□□□□□ -0.17
HMGN1-215	ENST00000485550	SLC51A	Q86UW1	340 aa		13.96	□□□□□ -0.17
HMGN1-215	ENST00000485550	PSMD1	Q99460	953 aa		13.96	□□□□□ -0.17
HMGN1-215	ENST00000485550	RRP7A	Q9Y3A4	280 aa	Known RBP	13.96	□□□□□ -0.17
HMGN1-215	ENST00000485550	HLF	Q16534	295 aa		13.95	□□□□□ -0.18
HMGN1-215	ENST00000485550	PNISR	Q8TF01	805 aa	Known RBP	13.95	□□□□□ -0.18
HMGN1-215	ENST00000485550	AKAP11	Q9UKA4	1901 aa		13.95	□□□□□ -0.18
HMGN1-215	ENST00000485550	LAMB4	A4D0S4	1761 aa		13.94	□□□□□ -0.18
HMGN1-215	ENST00000485550	PRKAR2A	P13861	404 aa	Known RBP	13.94	□□□□□ -0.18
HMGN1-215	ENST00000485550	EIF4A1	P60842	406 aa	Known RBP	13.94	□□□□□ -0.18
HMGN1-215	ENST00000485550	EVX2	Q03828	476 aa		13.94	□□□□□ -0.18
HMGN1-215	ENST00000485550	DGKZ	Q13574	1117 aa		13.94	□□□□□ -0.18
HMGN1-215	ENST00000485550	NUTM1	Q86Y26	1132 aa		13.94	□□□□□ -0.18
HMGN1-215	ENST00000485550	LARGE2	Q8N3Y3	721 aa		13.94	□□□□□ -0.18
HMGN1-215	ENST00000485550	PNN	Q9H307	717 aa	Known RBP	13.94	□□□□□ -0.18
HMGN1-215	ENST00000485550	ABCC12	Q96J65	1359 aa		13.94	□□□□□ -0.18
HMGN1-215	ENST00000485550	TCERG1	O14776	1098 aa	Known RBP	13.93	□□□□□ -0.18
HMGN1-215	ENST00000485550	MYL6B	P14649	208 aa		13.93	□□□□□ -0.18
HMGN1-215	ENST00000485550	MAP2K2	P36507	400 aa		13.93	□□□□□ -0.18
HMGN1-215	ENST00000485550	RIPK4	P57078	832 aa		13.93	□□□□□ -0.18
HMGN1-215	ENST00000485550	RALBP1	Q15311	655 aa		13.93	□□□□□ -0.18
HMGN1-215	ENST00000485550	USP50	Q70EL3	339 aa	Predicted RBP	13.93	□□□□□ -0.18
HMGN1-215	ENST00000485550	CELF2	O95319	508 aa	Known RBP	13.92	□□□□□ -0.18
HMGN1-215	ENST00000485550	TTLL7	Q6ZT98	887 aa		13.92	□□□□□ -0.18
HMGN1-215	ENST00000485550	SAPCD2	Q86UD0	394 aa		13.92	□□□□□ -0.18
HMGN1-215	ENST00000485550	NEUROD2	Q15784	382 aa		13.91	□□□□□ -0.18
HMGN1-215	ENST00000485550	CRY2	Q49AN0	593 aa		13.91	□□□□□ -0.18

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