RNA–Protein interactions for RNA: ENST00000484305.1

HDAC1-209, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-209ENST00000484305 C1QTNF8P60827 252 aa16.69■□□□□ 0.26
HDAC1-209ENST00000484305 CRY2Q49AN0 593 aa16.69■□□□□ 0.26
HDAC1-209ENST00000484305 HSP90AB3PQ58FF7 597 aa16.69■□□□□ 0.26
HDAC1-209ENST00000484305 NLRP10Q86W26 655 aa16.69■□□□□ 0.26
HDAC1-209ENST00000484305 C7orf43Q8WVR3 580 aa16.69■□□□□ 0.26
HDAC1-209ENST00000484305 UTP14AQ9BVJ6 771 aaKnown RBP16.69■□□□□ 0.26
HDAC1-209ENST00000484305 PHAXQ9H814 394 aaKnown RBP16.69■□□□□ 0.26
HDAC1-209ENST00000484305 RIC1Q4ADV7 1423 aa16.69■□□□□ 0.26
HDAC1-209ENST00000484305 IL16Q14005 1332 aa16.69■□□□□ 0.26
HDAC1-209ENST00000484305 C3orf67Q6ZVT6 689 aa16.68■□□□□ 0.26
HDAC1-209ENST00000484305 ZNF428Q96B54 188 aa16.68■□□□□ 0.26
HDAC1-209ENST00000484305 DICER1Q9UPY3 1922 aaKnown RBP16.68■□□□□ 0.26
HDAC1-209ENST00000484305 ALDH1B1P30837 517 aa16.67■□□□□ 0.26
HDAC1-209ENST00000484305 OLFM4Q6UX06 510 aa16.67■□□□□ 0.26
HDAC1-209ENST00000484305 SYNE4Q8N205 404 aa16.67■□□□□ 0.26
HDAC1-209ENST00000484305 TIAM2Q8IVF5 1701 aa16.67■□□□□ 0.26
HDAC1-209ENST00000484305 LAMB2P55268 1798 aa16.66■□□□□ 0.26
HDAC1-209ENST00000484305 SLC10A5Q5PT55 438 aa16.66■□□□□ 0.26
HDAC1-209ENST00000484305 SOGA3Q5TF21 947 aa16.66■□□□□ 0.26
HDAC1-209ENST00000484305 CCDC30Q5VVM6 783 aa16.66■□□□□ 0.26
HDAC1-209ENST00000484305 WDR63Q8IWG1 891 aa16.66■□□□□ 0.26
HDAC1-209ENST00000484305 TRMT112Q9UI30 125 aaKnown RBP16.66■□□□□ 0.26
HDAC1-209ENST00000484305 ATP5J2-PTCD1G3V325 749 aa16.65■□□□□ 0.26
HDAC1-209ENST00000484305 KIF3CO14782 793 aa16.65■□□□□ 0.26
HDAC1-209ENST00000484305 HOXA10P31260 410 aaPredicted RBP16.65■□□□□ 0.26
HDAC1-209ENST00000484305 RPGRQ92834 1020 aaKnown RBP16.65■□□□□ 0.26
HDAC1-209ENST00000484305 ISCA1Q9BUE6 129 aa16.65■□□□□ 0.26
HDAC1-209ENST00000484305 TAOK3Q9H2K8 898 aa16.65■□□□□ 0.26
HDAC1-209ENST00000484305 RNF123Q5XPI4 1314 aa16.65■□□□□ 0.26
HDAC1-209ENST00000484305 LTBP3Q9NS15 1303 aa16.65■□□□□ 0.26
HDAC1-209ENST00000484305 FANCIQ9NVI1 1328 aa16.65■□□□□ 0.26
HDAC1-209ENST00000484305 TCERG1O14776 1098 aaKnown RBP16.64■□□□□ 0.25
HDAC1-209ENST00000484305 HCLS1P14317 486 aaPredicted RBP16.64■□□□□ 0.25
HDAC1-209ENST00000484305 TWISTNBQ3B726 338 aaPredicted RBP16.64■□□□□ 0.25
HDAC1-209ENST00000484305 CCDC93Q567U6 631 aa16.64■□□□□ 0.25
HDAC1-209ENST00000484305 RIC3Q7Z5B4 369 aa16.64■□□□□ 0.25
HDAC1-209ENST00000484305 NLRP3Q96P20 1036 aa16.64■□□□□ 0.25
HDAC1-209ENST00000484305 NMRK2Q9NPI5 230 aa16.64■□□□□ 0.25
HDAC1-209ENST00000484305 SPINK5Q9NQ38 1064 aaPredicted RBP16.64■□□□□ 0.25
HDAC1-209ENST00000484305 DDX60Q8IY21 1712 aaKnown RBP16.63■□□□□ 0.25
HDAC1-209ENST00000484305 GOLGA2Q08379 1002 aa16.63■□□□□ 0.25
HDAC1-209ENST00000484305 RBM17Q96I25 401 aaKnown RBP16.63■□□□□ 0.25
HDAC1-209ENST00000484305 CHMP4AQ9BY43 222 aa16.63■□□□□ 0.25
HDAC1-209ENST00000484305 SH3TC1Q8TE82 1336 aa16.63■□□□□ 0.25
HDAC1-209ENST00000484305 ZC3H4Q9UPT8 1303 aaKnown RBP16.63■□□□□ 0.25
HDAC1-209ENST00000484305 CRAMP1Q96RY5 1269 aa16.62■□□□□ 0.25
HDAC1-209ENST00000484305 TAF1P21675 1872 aa16.62■□□□□ 0.25
HDAC1-209ENST00000484305 TRIM28Q13263 835 aaKnown RBP16.61■□□□□ 0.25
HDAC1-209ENST00000484305 SLC51AQ86UW1 340 aa16.61■□□□□ 0.25
HDAC1-209ENST00000484305 FAM89AQ96GI7 184 aa16.61■□□□□ 0.25
HDAC1-209ENST00000484305 STK31Q9BXU1 1019 aa16.61■□□□□ 0.25
HDAC1-209ENST00000484305 KDM2BQ8NHM5 1336 aa16.61■□□□□ 0.25
HDAC1-209ENST00000484305 FKBP4Q02790 459 aaKnown RBP eCLIP16.6■□□□□ 0.25
HDAC1-209ENST00000484305 EXOSC9Q06265 439 aaKnown RBP16.6■□□□□ 0.25
HDAC1-209ENST00000484305 RTL5Q5HYW3 569 aaPredicted RBP16.6■□□□□ 0.25
HDAC1-209ENST00000484305 RTKN2Q8IZC4 609 aa16.6■□□□□ 0.25
HDAC1-209ENST00000484305 MYD88Q99836 296 aa16.6■□□□□ 0.25
HDAC1-209ENST00000484305 RRAGCQ9HB90 399 aa16.6■□□□□ 0.25
HDAC1-209ENST00000484305 CACNA1FO60840 1977 aa16.6■□□□□ 0.25
HDAC1-209ENST00000484305 SNED1Q8TER0 1413 aa16.6■□□□□ 0.25
HDAC1-209ENST00000484305 GLTPD2A6NH11 291 aa16.59■□□□□ 0.25
HDAC1-209ENST00000484305 VAMP4O75379 141 aa16.59■□□□□ 0.25
HDAC1-209ENST00000484305 DDX58O95786 925 aaKnown RBP16.59■□□□□ 0.25
HDAC1-209ENST00000484305 SLC4A2P04920 1241 aa16.59■□□□□ 0.25
HDAC1-209ENST00000484305 G2E3Q7L622 706 aa16.59■□□□□ 0.25
HDAC1-209ENST00000484305 ZNF277Q9NRM2 450 aaPredicted RBP16.59■□□□□ 0.25
HDAC1-209ENST00000484305 PPEF1O14829 653 aaPredicted RBP16.58■□□□□ 0.24
HDAC1-209ENST00000484305 KSR2Q6VAB6 950 aa16.58■□□□□ 0.24
HDAC1-209ENST00000484305 METTL22Q9BUU2 404 aaPredicted RBP16.58■□□□□ 0.24
HDAC1-209ENST00000484305 MAP3K2Q9Y2U5 619 aa16.58■□□□□ 0.24
HDAC1-209ENST00000484305 ABCC4O15439 1325 aa16.58■□□□□ 0.24
HDAC1-209ENST00000484305 ZNF521Q96K83 1311 aa16.57■□□□□ 0.24
HDAC1-209ENST00000484305 PI4KAP2A4QPH2 592 aa16.57■□□□□ 0.24
HDAC1-209ENST00000484305 CC2D2BQ6DHV5 1058 aa16.57■□□□□ 0.24
HDAC1-209ENST00000484305 PI4KAP1Q8N8J0 262 aa16.57■□□□□ 0.24
HDAC1-209ENST00000484305 MYH16Q9H6N6 1097 aa16.57■□□□□ 0.24
HDAC1-209ENST00000484305 TOMM70O94826 608 aa16.56■□□□□ 0.24
HDAC1-209ENST00000484305 DPY19L2Q6NUT2 758 aa16.56■□□□□ 0.24
HDAC1-209ENST00000484305 ZBTB38Q8NAP3 1195 aaPredicted RBP16.56■□□□□ 0.24
HDAC1-209ENST00000484305 CCDC191Q8NCU4 936 aa16.56■□□□□ 0.24
HDAC1-209ENST00000484305 PSMD1Q99460 953 aa16.56■□□□□ 0.24
HDAC1-209ENST00000484305 CCER2I3L3R5 266 aa16.55■□□□□ 0.24
HDAC1-209ENST00000484305 IRS4O14654 1257 aaPredicted RBP16.55■□□□□ 0.24
HDAC1-209ENST00000484305 BBOX1O75936 387 aa16.55■□□□□ 0.24
HDAC1-209ENST00000484305 IARSP41252 1262 aaKnown RBP16.55■□□□□ 0.24
HDAC1-209ENST00000484305 DDX46Q7L014 1031 aaKnown RBP16.55■□□□□ 0.24
HDAC1-209ENST00000484305 JARID2Q92833 1246 aaPredicted RBP16.55■□□□□ 0.24
HDAC1-209ENST00000484305 ATP6V0A2Q9Y487 856 aa16.55■□□□□ 0.24
HDAC1-209ENST00000484305 WDR90Q96KV7 1748 aa16.55■□□□□ 0.24
HDAC1-209ENST00000484305 POTECB2RU33 542 aa16.54■□□□□ 0.24
HDAC1-209ENST00000484305 PCCAP05165 728 aaPredicted RBP16.54■□□□□ 0.24
HDAC1-209ENST00000484305 IGKV5-2P06315 115 aa16.54■□□□□ 0.24
HDAC1-209ENST00000484305 FLIIQ13045 1269 aa16.54■□□□□ 0.24
HDAC1-209ENST00000484305 SF3B3Q15393 1217 aaKnown RBP16.54■□□□□ 0.24
HDAC1-209ENST00000484305 GRIPAP1Q4V328 841 aa16.54■□□□□ 0.24
HDAC1-209ENST00000484305 CWC25Q9NXE8 425 aaPredicted RBP16.54■□□□□ 0.24
HDAC1-209ENST00000484305 COL4A1P02462 1669 aa16.53■□□□□ 0.24
HDAC1-209ENST00000484305 DDNO94850 711 aaPredicted RBP16.53■□□□□ 0.24
HDAC1-209ENST00000484305 VEGFAP15692 232 aaPredicted RBP16.53■□□□□ 0.24
HDAC1-209ENST00000484305 GRAPQ13588 217 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms