RNA–Protein interactions for RNA: ENST00000482251.2

CPSF4-212, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 574 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-212ENST00000482251 C7orf43Q8WVR3 580 aa13.62□□□□□ -0.23
CPSF4-212ENST00000482251 MRS2Q9HD23 443 aa13.62□□□□□ -0.23
CPSF4-212ENST00000482251 LAMB2P55268 1798 aa13.62□□□□□ -0.23
CPSF4-212ENST00000482251 RIC1Q4ADV7 1423 aa13.62□□□□□ -0.23
CPSF4-212ENST00000482251 TCERG1O14776 1098 aaKnown RBP13.61□□□□□ -0.23
CPSF4-212ENST00000482251 PARP10Q53GL7 1025 aa13.61□□□□□ -0.23
CPSF4-212ENST00000482251 PPP1R42Q7Z4L9 355 aa13.61□□□□□ -0.23
CPSF4-212ENST00000482251 UTP14AQ9BVJ6 771 aaKnown RBP13.61□□□□□ -0.23
CPSF4-212ENST00000482251 ZNF277Q9NRM2 450 aaPredicted RBP13.61□□□□□ -0.23
CPSF4-212ENST00000482251 IFT57Q9NWB7 429 aa13.61□□□□□ -0.23
CPSF4-212ENST00000482251 ANP32CO43423 234 aa13.6□□□□□ -0.23
CPSF4-212ENST00000482251 HOXB7P09629 217 aa13.6□□□□□ -0.23
CPSF4-212ENST00000482251 ZNF853P0CG23 659 aa13.6□□□□□ -0.23
CPSF4-212ENST00000482251 SYNE4Q8N205 404 aa13.6□□□□□ -0.23
CPSF4-212ENST00000482251 WDR90Q96KV7 1748 aa13.6□□□□□ -0.23
CPSF4-212ENST00000482251 PPEF1O14829 653 aaPredicted RBP13.59□□□□□ -0.23
CPSF4-212ENST00000482251 HCLS1P14317 486 aaPredicted RBP13.59□□□□□ -0.23
CPSF4-212ENST00000482251 ALDH1B1P30837 517 aa13.59□□□□□ -0.23
CPSF4-212ENST00000482251 GNAI1P63096 354 aa13.59□□□□□ -0.23
CPSF4-212ENST00000482251 FKBP4Q02790 459 aaKnown RBP eCLIP13.59□□□□□ -0.23
CPSF4-212ENST00000482251 CALD1Q05682 793 aaKnown RBP13.59□□□□□ -0.23
CPSF4-212ENST00000482251 HSP90AB3PQ58FF7 597 aa13.59□□□□□ -0.23
CPSF4-212ENST00000482251 NLRP10Q86W26 655 aa13.59□□□□□ -0.23
CPSF4-212ENST00000482251 RBM46Q8TBY0 533 aaKnown RBP13.59□□□□□ -0.23
CPSF4-212ENST00000482251 TSR2Q969E8 191 aaKnown RBP13.59□□□□□ -0.23
CPSF4-212ENST00000482251 DBF4Q9UBU7 674 aaPredicted RBP13.59□□□□□ -0.23
CPSF4-212ENST00000482251 SNED1Q8TER0 1413 aa13.58□□□□□ -0.24
CPSF4-212ENST00000482251 ATP5J2-PTCD1G3V325 749 aa13.58□□□□□ -0.24
CPSF4-212ENST00000482251 DDNO94850 711 aaPredicted RBP13.58□□□□□ -0.24
CPSF4-212ENST00000482251 HTRA3P83110 453 aa13.58□□□□□ -0.24
CPSF4-212ENST00000482251 TCIRG1Q13488 830 aa13.58□□□□□ -0.24
CPSF4-212ENST00000482251 DPY19L2Q6NUT2 758 aa13.58□□□□□ -0.24
CPSF4-212ENST00000482251 C8orf58Q8NAV2 365 aa13.58□□□□□ -0.24
CPSF4-212ENST00000482251 RBM17Q96I25 401 aaKnown RBP13.58□□□□□ -0.24
CPSF4-212ENST00000482251 TRMT112Q9UI30 125 aaKnown RBP13.58□□□□□ -0.24
CPSF4-212ENST00000482251 DDX60Q8IY21 1712 aaKnown RBP13.58□□□□□ -0.24
CPSF4-212ENST00000482251 ZNF541Q9H0D2 1346 aa13.58□□□□□ -0.24
CPSF4-212ENST00000482251 COL4A5P29400 1685 aa13.57□□□□□ -0.24
CPSF4-212ENST00000482251 VEGFAP15692 232 aaPredicted RBP13.57□□□□□ -0.24
CPSF4-212ENST00000482251 RTL5Q5HYW3 569 aaPredicted RBP13.57□□□□□ -0.24
CPSF4-212ENST00000482251 RTKN2Q8IZC4 609 aa13.57□□□□□ -0.24
CPSF4-212ENST00000482251 PLBD2Q8NHP8 589 aa13.57□□□□□ -0.24
CPSF4-212ENST00000482251 NLRP3Q96P20 1036 aa13.57□□□□□ -0.24
CPSF4-212ENST00000482251 PHAXQ9H814 394 aaKnown RBP13.57□□□□□ -0.24
CPSF4-212ENST00000482251 SALL2Q9Y467 1007 aaPredicted RBP13.57□□□□□ -0.24
CPSF4-212ENST00000482251 ABCC4O15439 1325 aa13.57□□□□□ -0.24
CPSF4-212ENST00000482251 POTECB2RU33 542 aa13.56□□□□□ -0.24
CPSF4-212ENST00000482251 HOXA10P31260 410 aaPredicted RBP13.56□□□□□ -0.24
CPSF4-212ENST00000482251 IARSP41252 1262 aaKnown RBP13.56□□□□□ -0.24
CPSF4-212ENST00000482251 ANKRD13DQ6ZTN6 518 aa13.56□□□□□ -0.24
CPSF4-212ENST00000482251 TSPYL6Q8N831 410 aa13.56□□□□□ -0.24
CPSF4-212ENST00000482251 HYPKQ9NX55 129 aa13.56□□□□□ -0.24
CPSF4-212ENST00000482251 SH3TC1Q8TE82 1336 aa13.56□□□□□ -0.24
CPSF4-212ENST00000482251 TAF1P21675 1872 aa13.55□□□□□ -0.24
CPSF4-212ENST00000482251 APLP1P51693 650 aa13.55□□□□□ -0.24
CPSF4-212ENST00000482251 SMC1BQ8NDV3 1235 aa13.55□□□□□ -0.24
CPSF4-212ENST00000482251 CRAMP1Q96RY5 1269 aa13.55□□□□□ -0.24
CPSF4-212ENST00000482251 RNF123Q5XPI4 1314 aa13.55□□□□□ -0.24
CPSF4-212ENST00000482251 COL4A1P02462 1669 aa13.54□□□□□ -0.24
CPSF4-212ENST00000482251 POTEIP0CG38 1075 aa13.54□□□□□ -0.24
CPSF4-212ENST00000482251 POTEJP0CG39 1038 aa13.54□□□□□ -0.24
CPSF4-212ENST00000482251 GOLGA2Q08379 1002 aa13.54□□□□□ -0.24
CPSF4-212ENST00000482251 FSTL1Q12841 308 aa13.54□□□□□ -0.24
CPSF4-212ENST00000482251 RIC3Q7Z5B4 369 aa13.54□□□□□ -0.24
CPSF4-212ENST00000482251 WWC1Q8IX03 1113 aa13.54□□□□□ -0.24
CPSF4-212ENST00000482251 FAM89AQ96GI7 184 aa13.54□□□□□ -0.24
CPSF4-212ENST00000482251 SLC10A5Q5PT55 438 aa13.53□□□□□ -0.24
CPSF4-212ENST00000482251 PSMD1Q99460 953 aa13.53□□□□□ -0.24
CPSF4-212ENST00000482251 MYD88Q99836 296 aa13.53□□□□□ -0.24
CPSF4-212ENST00000482251 ISCA1Q9BUE6 129 aa13.53□□□□□ -0.24
CPSF4-212ENST00000482251 AOC3Q16853 763 aa13.51□□□□□ -0.25
CPSF4-212ENST00000482251 CCDC27Q2M243 656 aa13.51□□□□□ -0.25
CPSF4-212ENST00000482251 CCDC30Q5VVM6 783 aa13.51□□□□□ -0.25
CPSF4-212ENST00000482251 CC2D2BQ6DHV5 1058 aa13.51□□□□□ -0.25
CPSF4-212ENST00000482251 DDX46Q7L014 1031 aaKnown RBP13.51□□□□□ -0.25
CPSF4-212ENST00000482251 FAM9BQ8IZU0 186 aa13.51□□□□□ -0.25
CPSF4-212ENST00000482251 LARGE2Q8N3Y3 721 aa13.51□□□□□ -0.25
CPSF4-212ENST00000482251 JDP2Q8WYK2 163 aa13.51□□□□□ -0.25
CPSF4-212ENST00000482251 ATP6V0A2Q9Y487 856 aa13.51□□□□□ -0.25
CPSF4-212ENST00000482251 GJA3Q9Y6H8 435 aa13.51□□□□□ -0.25
CPSF4-212ENST00000482251 SCN4AP35499 1836 aa13.5□□□□□ -0.25
CPSF4-212ENST00000482251 LRRC37AA6NMS7 1700 aa13.5□□□□□ -0.25
CPSF4-212ENST00000482251 FANCIQ9NVI1 1328 aa13.5□□□□□ -0.25
CPSF4-212ENST00000482251 FZD9O00144 591 aa13.5□□□□□ -0.25
CPSF4-212ENST00000482251 PPIP5K2O43314 1243 aa13.5□□□□□ -0.25
CPSF4-212ENST00000482251 GRAPQ13588 217 aa13.5□□□□□ -0.25
CPSF4-212ENST00000482251 EAPPQ56P03 285 aaPredicted RBP13.5□□□□□ -0.25
CPSF4-212ENST00000482251 GRAPLQ8TC17 118 aaPredicted RBP13.5□□□□□ -0.25
CPSF4-212ENST00000482251 JARID2Q92833 1246 aaPredicted RBP13.5□□□□□ -0.25
CPSF4-212ENST00000482251 TMX4Q9H1E5 349 aaPredicted RBP13.5□□□□□ -0.25
CPSF4-212ENST00000482251 DUOX1Q9NRD9 1551 aa13.49□□□□□ -0.25
CPSF4-212ENST00000482251 IQCA1LA6NCM1 817 aa13.49□□□□□ -0.25
CPSF4-212ENST00000482251 IRS4O14654 1257 aaPredicted RBP13.49□□□□□ -0.25
CPSF4-212ENST00000482251 TWISTNBQ3B726 338 aaPredicted RBP13.49□□□□□ -0.25
CPSF4-212ENST00000482251 NIM1KQ8IY84 436 aa13.49□□□□□ -0.25
CPSF4-212ENST00000482251 L3MBTL3Q96JM7 780 aaPredicted RBP13.49□□□□□ -0.25
CPSF4-212ENST00000482251 MAP3K2Q9Y2U5 619 aa13.49□□□□□ -0.25
CPSF4-212ENST00000482251 LTBP1Q14766 1721 aa13.49□□□□□ -0.25
CPSF4-212ENST00000482251 DDX58O95786 925 aaKnown RBP13.48□□□□□ -0.25
CPSF4-212ENST00000482251 EIF6P56537 245 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms