RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 C3orf67Q6ZVT6 689 aa19.37■□□□□ 0.69
LIMS3-204ENST00000482065 PPP1R42Q7Z4L9 355 aa19.37■□□□□ 0.69
LIMS3-204ENST00000482065 ANP32CO43423 234 aa19.36■□□□□ 0.69
LIMS3-204ENST00000482065 ALDH1B1P30837 517 aa19.36■□□□□ 0.69
LIMS3-204ENST00000482065 CALD1Q05682 793 aaKnown RBP19.36■□□□□ 0.69
LIMS3-204ENST00000482065 C16orf71Q8IYS4 520 aaPredicted RBP19.36■□□□□ 0.69
LIMS3-204ENST00000482065 UTP14AQ9BVJ6 771 aaKnown RBP19.36■□□□□ 0.69
LIMS3-204ENST00000482065 GNAI1P63096 354 aa19.35■□□□□ 0.69
LIMS3-204ENST00000482065 HSP90AB3PQ58FF7 597 aa19.35■□□□□ 0.69
LIMS3-204ENST00000482065 RPGRQ92834 1020 aaKnown RBP19.35■□□□□ 0.69
LIMS3-204ENST00000482065 MRS2Q9HD23 443 aa19.35■□□□□ 0.69
LIMS3-204ENST00000482065 ELL2O00472 640 aaPredicted RBP19.34■□□□□ 0.69
LIMS3-204ENST00000482065 TCIRG1Q13488 830 aa19.34■□□□□ 0.69
LIMS3-204ENST00000482065 NLRP10Q86W26 655 aa19.34■□□□□ 0.69
LIMS3-204ENST00000482065 ZNF428Q96B54 188 aa19.34■□□□□ 0.69
LIMS3-204ENST00000482065 DBF4Q9UBU7 674 aaPredicted RBP19.34■□□□□ 0.69
LIMS3-204ENST00000482065 FKBP4Q02790 459 aaKnown RBP eCLIP19.33■□□□□ 0.68
LIMS3-204ENST00000482065 SLC51AQ86UW1 340 aa19.33■□□□□ 0.68
LIMS3-204ENST00000482065 RBM46Q8TBY0 533 aaKnown RBP19.33■□□□□ 0.68
LIMS3-204ENST00000482065 ZNF277Q9NRM2 450 aaPredicted RBP19.33■□□□□ 0.68
LIMS3-204ENST00000482065 HOXA10P31260 410 aaPredicted RBP19.32■□□□□ 0.68
LIMS3-204ENST00000482065 SYNE4Q8N205 404 aa19.32■□□□□ 0.68
LIMS3-204ENST00000482065 C8orf58Q8NAV2 365 aa19.32■□□□□ 0.68
LIMS3-204ENST00000482065 PLBD2Q8NHP8 589 aa19.32■□□□□ 0.68
LIMS3-204ENST00000482065 SNED1Q8TER0 1413 aa19.32■□□□□ 0.68
LIMS3-204ENST00000482065 SLC10A5Q5PT55 438 aa19.31■□□□□ 0.68
LIMS3-204ENST00000482065 DPY19L2Q6NUT2 758 aa19.31■□□□□ 0.68
LIMS3-204ENST00000482065 ANKRD13DQ6ZTN6 518 aa19.31■□□□□ 0.68
LIMS3-204ENST00000482065 RTKN2Q8IZC4 609 aa19.31■□□□□ 0.68
LIMS3-204ENST00000482065 RBM17Q96I25 401 aaKnown RBP19.31■□□□□ 0.68
LIMS3-204ENST00000482065 NLRP3Q96P20 1036 aa19.31■□□□□ 0.68
LIMS3-204ENST00000482065 HYPKQ9NX55 129 aa19.31■□□□□ 0.68
LIMS3-204ENST00000482065 TCERG1O14776 1098 aaKnown RBP19.3■□□□□ 0.68
LIMS3-204ENST00000482065 HCLS1P14317 486 aaPredicted RBP19.3■□□□□ 0.68
LIMS3-204ENST00000482065 VEGFAP15692 232 aaPredicted RBP19.3■□□□□ 0.68
LIMS3-204ENST00000482065 CRAMP1Q96RY5 1269 aa19.3■□□□□ 0.68
LIMS3-204ENST00000482065 TRMT112Q9UI30 125 aaKnown RBP19.3■□□□□ 0.68
LIMS3-204ENST00000482065 WDR90Q96KV7 1748 aa19.3■□□□□ 0.68
LIMS3-204ENST00000482065 LAMB2P55268 1798 aa19.29■□□□□ 0.68
LIMS3-204ENST00000482065 RNF123Q5XPI4 1314 aa19.29■□□□□ 0.68
LIMS3-204ENST00000482065 POTECB2RU33 542 aa19.29■□□□□ 0.68
LIMS3-204ENST00000482065 ATP5J2-PTCD1G3V325 749 aa19.29■□□□□ 0.68
LIMS3-204ENST00000482065 PPEF1O14829 653 aaPredicted RBP19.29■□□□□ 0.68
LIMS3-204ENST00000482065 DDNO94850 711 aaPredicted RBP19.29■□□□□ 0.68
LIMS3-204ENST00000482065 TSR2Q969E8 191 aaKnown RBP19.29■□□□□ 0.68
LIMS3-204ENST00000482065 SH3TC1Q8TE82 1336 aa19.28■□□□□ 0.68
LIMS3-204ENST00000482065 CCDC27Q2M243 656 aa19.28■□□□□ 0.68
LIMS3-204ENST00000482065 WWC1Q8IX03 1113 aa19.28■□□□□ 0.68
LIMS3-204ENST00000482065 TSPYL6Q8N831 410 aa19.28■□□□□ 0.68
LIMS3-204ENST00000482065 ISCA1Q9BUE6 129 aa19.28■□□□□ 0.68
LIMS3-204ENST00000482065 PHAXQ9H814 394 aaKnown RBP19.28■□□□□ 0.68
LIMS3-204ENST00000482065 ABCC4O15439 1325 aa19.27■□□□□ 0.68
LIMS3-204ENST00000482065 IARSP41252 1262 aaKnown RBP19.27■□□□□ 0.68
LIMS3-204ENST00000482065 FSTL1Q12841 308 aa19.27■□□□□ 0.68
LIMS3-204ENST00000482065 APLP1P51693 650 aa19.26■□□□□ 0.67
LIMS3-204ENST00000482065 CC2D2BQ6DHV5 1058 aa19.26■□□□□ 0.67
LIMS3-204ENST00000482065 PSMD1Q99460 953 aa19.26■□□□□ 0.67
LIMS3-204ENST00000482065 ZNF541Q9H0D2 1346 aa19.25■□□□□ 0.67
LIMS3-204ENST00000482065 GOLGA2Q08379 1002 aa19.25■□□□□ 0.67
LIMS3-204ENST00000482065 RIC3Q7Z5B4 369 aa19.25■□□□□ 0.67
LIMS3-204ENST00000482065 SMC1BQ8NDV3 1235 aa19.25■□□□□ 0.67
LIMS3-204ENST00000482065 SALL2Q9Y467 1007 aaPredicted RBP19.25■□□□□ 0.67
LIMS3-204ENST00000482065 DDX60Q8IY21 1712 aaKnown RBP19.25■□□□□ 0.67
LIMS3-204ENST00000482065 FAM89AQ96GI7 184 aa19.24■□□□□ 0.67
LIMS3-204ENST00000482065 COL4A5P29400 1685 aa19.24■□□□□ 0.67
LIMS3-204ENST00000482065 TAF1P21675 1872 aa19.23■□□□□ 0.67
LIMS3-204ENST00000482065 HTRA3P83110 453 aa19.23■□□□□ 0.67
LIMS3-204ENST00000482065 RTL5Q5HYW3 569 aaPredicted RBP19.23■□□□□ 0.67
LIMS3-204ENST00000482065 CCDC30Q5VVM6 783 aa19.23■□□□□ 0.67
LIMS3-204ENST00000482065 MYD88Q99836 296 aa19.22■□□□□ 0.67
LIMS3-204ENST00000482065 ATP6V0A2Q9Y487 856 aa19.22■□□□□ 0.67
LIMS3-204ENST00000482065 FZD9O00144 591 aa19.21■□□□□ 0.67
LIMS3-204ENST00000482065 TRIM28Q13263 835 aaKnown RBP19.21■□□□□ 0.67
LIMS3-204ENST00000482065 DDX46Q7L014 1031 aaKnown RBP19.21■□□□□ 0.67
LIMS3-204ENST00000482065 IL16Q14005 1332 aa19.21■□□□□ 0.67
LIMS3-204ENST00000482065 POTEIP0CG38 1075 aa19.2■□□□□ 0.66
LIMS3-204ENST00000482065 POTEJP0CG39 1038 aa19.2■□□□□ 0.66
LIMS3-204ENST00000482065 GRAPQ13588 217 aa19.2■□□□□ 0.66
LIMS3-204ENST00000482065 TWISTNBQ3B726 338 aaPredicted RBP19.2■□□□□ 0.66
LIMS3-204ENST00000482065 GRIPAP1Q4V328 841 aa19.2■□□□□ 0.66
LIMS3-204ENST00000482065 NCBP3Q53F19 620 aaKnown RBP19.2■□□□□ 0.66
LIMS3-204ENST00000482065 FAM9BQ8IZU0 186 aa19.2■□□□□ 0.66
LIMS3-204ENST00000482065 GRAPLQ8TC17 118 aaPredicted RBP19.2■□□□□ 0.66
LIMS3-204ENST00000482065 JDP2Q8WYK2 163 aa19.2■□□□□ 0.66
LIMS3-204ENST00000482065 L3MBTL3Q96JM7 780 aaPredicted RBP19.2■□□□□ 0.66
LIMS3-204ENST00000482065 IRS4O14654 1257 aaPredicted RBP19.19■□□□□ 0.66
LIMS3-204ENST00000482065 BBOX1O75936 387 aa19.19■□□□□ 0.66
LIMS3-204ENST00000482065 LARGE2Q8N3Y3 721 aa19.19■□□□□ 0.66
LIMS3-204ENST00000482065 TMX4Q9H1E5 349 aaPredicted RBP19.19■□□□□ 0.66
LIMS3-204ENST00000482065 FANCIQ9NVI1 1328 aa19.19■□□□□ 0.66
LIMS3-204ENST00000482065 COL4A1P02462 1669 aa19.18■□□□□ 0.66
LIMS3-204ENST00000482065 DDX58O95786 925 aaKnown RBP19.18■□□□□ 0.66
LIMS3-204ENST00000482065 SP8Q8IXZ3 490 aa19.18■□□□□ 0.66
LIMS3-204ENST00000482065 DNAJC5GQ8N7S2 189 aa19.18■□□□□ 0.66
LIMS3-204ENST00000482065 CHMP4AQ9BY43 222 aa19.18■□□□□ 0.66
LIMS3-204ENST00000482065 SCN4AP35499 1836 aa19.18■□□□□ 0.66
LIMS3-204ENST00000482065 IQCA1LA6NCM1 817 aa19.17■□□□□ 0.66
LIMS3-204ENST00000482065 PPIP5K2O43314 1243 aa19.17■□□□□ 0.66
LIMS3-204ENST00000482065 SF3B3Q15393 1217 aaKnown RBP19.17■□□□□ 0.66
LIMS3-204ENST00000482065 AOC3Q16853 763 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms