RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 TIAM2Q8IVF5 1701 aa5.6□□□□□ -1.51
VPS13D-208ENST00000481484 GNPATO15228 680 aa5.6□□□□□ -1.51
VPS13D-208ENST00000481484 ZNF784Q8NCA9 323 aaPredicted RBP5.6□□□□□ -1.51
VPS13D-208ENST00000481484 LINC00116Q8NCU8 138 aa5.6□□□□□ -1.51
VPS13D-208ENST00000481484 CDCA7LQ96GN5 454 aa5.6□□□□□ -1.51
VPS13D-208ENST00000481484 RTCBQ9Y3I0 505 aaKnown RBP5.6□□□□□ -1.51
VPS13D-208ENST00000481484 ATP10DQ9P241 1426 aa5.59□□□□□ -1.51
VPS13D-208ENST00000481484 DLG5Q8TDM6 1919 aa5.59□□□□□ -1.51
VPS13D-208ENST00000481484 DICER1Q9UPY3 1922 aaKnown RBP5.59□□□□□ -1.51
VPS13D-208ENST00000481484 ATP6V1AP38606 617 aa5.59□□□□□ -1.51
VPS13D-208ENST00000481484 TNNT2P45379 298 aaPredicted RBP5.59□□□□□ -1.51
VPS13D-208ENST00000481484 CABP4P57796 275 aa5.59□□□□□ -1.51
VPS13D-208ENST00000481484 AKAP4Q5JQC9 854 aa5.59□□□□□ -1.51
VPS13D-208ENST00000481484 NLGN2Q8NFZ4 835 aa5.59□□□□□ -1.51
VPS13D-208ENST00000481484 ZFRQ96KR1 1074 aaKnown RBP5.59□□□□□ -1.51
VPS13D-208ENST00000481484 CDHR5Q9HBB8 845 aa5.59□□□□□ -1.51
VPS13D-208ENST00000481484 RBM27Q9P2N5 1060 aaKnown RBP5.59□□□□□ -1.51
VPS13D-208ENST00000481484 FAM198AQ9UFP1 575 aa5.59□□□□□ -1.51
VPS13D-208ENST00000481484 KDM3BQ7LBC6 1761 aa5.59□□□□□ -1.51
VPS13D-208ENST00000481484 SBF1O95248 1867 aa5.58□□□□□ -1.52
VPS13D-208ENST00000481484 COL15A1P39059 1388 aa5.58□□□□□ -1.52
VPS13D-208ENST00000481484 SEMA3EO15041 775 aa5.58□□□□□ -1.52
VPS13D-208ENST00000481484 GIGYF1O75420 1035 aaPredicted RBP5.58□□□□□ -1.52
VPS13D-208ENST00000481484 IL13P35225 146 aa5.58□□□□□ -1.52
VPS13D-208ENST00000481484 MTHFSP49914 203 aa5.58□□□□□ -1.52
VPS13D-208ENST00000481484 PTPN5P54829 565 aa5.58□□□□□ -1.52
VPS13D-208ENST00000481484 KCNQ4P56696 695 aa5.58□□□□□ -1.52
VPS13D-208ENST00000481484 ITPK1Q13572 414 aa5.58□□□□□ -1.52
VPS13D-208ENST00000481484 MSL1Q68DK7 614 aa5.58□□□□□ -1.52
VPS13D-208ENST00000481484 SULT6B1Q6IMI4 303 aa5.58□□□□□ -1.52
VPS13D-208ENST00000481484 VSIG10Q8N0Z9 540 aa5.58□□□□□ -1.52
VPS13D-208ENST00000481484 NLGN1Q8N2Q7 840 aa5.58□□□□□ -1.52
VPS13D-208ENST00000481484 TTC13Q8NBP0 860 aa5.58□□□□□ -1.52
VPS13D-208ENST00000481484 GAS2L2Q8NHY3 880 aa5.58□□□□□ -1.52
VPS13D-208ENST00000481484 ATG3Q9NT62 314 aa5.58□□□□□ -1.52
VPS13D-208ENST00000481484 CCDC87Q9NVE4 849 aa5.58□□□□□ -1.52
VPS13D-208ENST00000481484 ASAP1Q9ULH1 1129 aa5.58□□□□□ -1.52
VPS13D-208ENST00000481484 COL11A2P13942 1736 aaPredicted RBP5.57□□□□□ -1.52
VPS13D-208ENST00000481484 USP42Q9H9J4 1324 aaKnown RBP5.57□□□□□ -1.52
VPS13D-208ENST00000481484 ZC3H4Q9UPT8 1303 aaKnown RBP5.57□□□□□ -1.52
VPS13D-208ENST00000481484 SOWAHBA6NEL2 793 aa5.57□□□□□ -1.52
VPS13D-208ENST00000481484 C3orf80F5H4A9 247 aa5.57□□□□□ -1.52
VPS13D-208ENST00000481484 DIAPH1O60610 1272 aaKnown RBP5.57□□□□□ -1.52
VPS13D-208ENST00000481484 RPS6KA4O75676 772 aa5.57□□□□□ -1.52
VPS13D-208ENST00000481484 MMP10P09238 476 aa5.57□□□□□ -1.52
VPS13D-208ENST00000481484 TGFB2P61812 414 aa5.57□□□□□ -1.52
VPS13D-208ENST00000481484 TRAPPC3LQ5T215 181 aa5.57□□□□□ -1.52
VPS13D-208ENST00000481484 AEBP1Q8IUX7 1158 aa5.57□□□□□ -1.52
VPS13D-208ENST00000481484 ANKK1Q8NFD2 765 aa5.57□□□□□ -1.52
VPS13D-208ENST00000481484 CFAP53Q96M91 514 aa5.57□□□□□ -1.52
VPS13D-208ENST00000481484 SLC52A2Q9HAB3 445 aa5.57□□□□□ -1.52
VPS13D-208ENST00000481484 SEPT9Q9UHD8 586 aaPredicted RBP5.57□□□□□ -1.52
VPS13D-208ENST00000481484 ANKRD31Q8N7Z5 1873 aa5.57□□□□□ -1.52
VPS13D-208ENST00000481484 CEMIPQ8WUJ3 1361 aa5.56□□□□□ -1.52
VPS13D-208ENST00000481484 CACNA1SQ13698 1873 aa5.56□□□□□ -1.52
VPS13D-208ENST00000481484 SOS1Q07889 1333 aaPredicted RBP5.56□□□□□ -1.52
VPS13D-208ENST00000481484 TESPA1A2RU30 521 aaPredicted RBP5.56□□□□□ -1.52
VPS13D-208ENST00000481484 YBX3P16989 372 aaKnown RBP eCLIP5.56□□□□□ -1.52
VPS13D-208ENST00000481484 RFC4P35249 363 aa5.56□□□□□ -1.52
VPS13D-208ENST00000481484 CRKLP46109 303 aaKnown RBP5.56□□□□□ -1.52
VPS13D-208ENST00000481484 TATDN2Q93075 761 aa5.56□□□□□ -1.52
VPS13D-208ENST00000481484 PARP3Q9Y6F1 533 aa5.56□□□□□ -1.52
VPS13D-208ENST00000481484 FER1L6Q2WGJ9 1857 aa5.56□□□□□ -1.52
VPS13D-208ENST00000481484 CCDC88AQ3V6T2 1871 aa5.56□□□□□ -1.52
VPS13D-208ENST00000481484 WDR90Q96KV7 1748 aa5.55□□□□□ -1.52
VPS13D-208ENST00000481484 PER1O15534 1290 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-208ENST00000481484 RNMTO43148 476 aaKnown RBP5.55□□□□□ -1.52
VPS13D-208ENST00000481484 GYS1P13807 737 aa5.55□□□□□ -1.52
VPS13D-208ENST00000481484 C1QTNF8P60827 252 aa5.55□□□□□ -1.52
VPS13D-208ENST00000481484 PTGDRQ13258 359 aa5.55□□□□□ -1.52
VPS13D-208ENST00000481484 AMIGO3Q86WK7 504 aa5.55□□□□□ -1.52
VPS13D-208ENST00000481484 TTC5Q8N0Z6 440 aa5.55□□□□□ -1.52
VPS13D-208ENST00000481484 PLA2G2EQ9NZK7 142 aa5.55□□□□□ -1.52
VPS13D-208ENST00000481484 PDZRN3Q9UPQ7 1066 aa5.55□□□□□ -1.52
VPS13D-208ENST00000481484 NUDCQ9Y266 331 aa5.55□□□□□ -1.52
VPS13D-208ENST00000481484 ANKRD36CQ5JPF3 1778 aa5.55□□□□□ -1.52
VPS13D-208ENST00000481484 CARMIL3Q8ND23 1372 aa5.55□□□□□ -1.52
VPS13D-208ENST00000481484 HEG1Q9ULI3 1381 aa5.55□□□□□ -1.52
VPS13D-208ENST00000481484 A0A087WZG4 1122 aa5.54□□□□□ -1.52
VPS13D-208ENST00000481484 ZPR1O75312 459 aa5.54□□□□□ -1.52
VPS13D-208ENST00000481484 STARD3NLO95772 234 aa5.54□□□□□ -1.52
VPS13D-208ENST00000481484 BCAMP50895 628 aa5.54□□□□□ -1.52
VPS13D-208ENST00000481484 TEFQ10587 303 aa5.54□□□□□ -1.52
VPS13D-208ENST00000481484 SLC4A9Q96Q91 983 aa5.54□□□□□ -1.52
VPS13D-208ENST00000481484 TEX13AQ9BXU3 409 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-208ENST00000481484 GPBP1L1Q9HC44 474 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-208ENST00000481484 NUP98P52948 1817 aa5.53□□□□□ -1.52
VPS13D-208ENST00000481484 GNAT3A8MTJ3 354 aa5.53□□□□□ -1.52
VPS13D-208ENST00000481484 NBPF26B4DH59 902 aa5.53□□□□□ -1.52
VPS13D-208ENST00000481484 SMAPO00193 183 aa5.53□□□□□ -1.52
VPS13D-208ENST00000481484 PTCD1O75127 700 aaKnown RBP5.53□□□□□ -1.52
VPS13D-208ENST00000481484 CC2D1BQ5T0F9 858 aaKnown RBP5.53□□□□□ -1.52
VPS13D-208ENST00000481484 IFFO2Q5TF58 517 aa5.53□□□□□ -1.52
VPS13D-208ENST00000481484 PADI6Q6TGC4 694 aa5.53□□□□□ -1.52
VPS13D-208ENST00000481484 NYAP1Q6ZVC0 841 aa5.53□□□□□ -1.52
VPS13D-208ENST00000481484 NUDT18Q6ZVK8 323 aa5.53□□□□□ -1.52
VPS13D-208ENST00000481484 NPM2Q86SE8 214 aaKnown RBP5.53□□□□□ -1.52
VPS13D-208ENST00000481484 NFATC2IPQ8NCF5 419 aa5.53□□□□□ -1.52
VPS13D-208ENST00000481484 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.53□□□□□ -1.52
VPS13D-208ENST00000481484 NARFQ9UHQ1 456 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms