RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 TGFB2P61812 414 aa10.45□□□□□ -0.74
USP54-212ENST00000480210 SLC10A5Q5PT55 438 aa10.45□□□□□ -0.74
USP54-212ENST00000480210 MSL1Q68DK7 614 aa10.45□□□□□ -0.74
USP54-212ENST00000480210 ATF7IPQ6VMQ6 1270 aa10.45□□□□□ -0.74
USP54-212ENST00000480210 BICDL1Q6ZP65 573 aa10.45□□□□□ -0.74
USP54-212ENST00000480210 NLRP10Q86W26 655 aa10.45□□□□□ -0.74
USP54-212ENST00000480210 CNBD1Q8NA66 436 aa10.45□□□□□ -0.74
USP54-212ENST00000480210 SRCIN1Q9C0H9 1055 aa10.45□□□□□ -0.74
USP54-212ENST00000480210 MYH3P11055 1940 aa10.45□□□□□ -0.74
USP54-212ENST00000480210 RIC1Q4ADV7 1423 aa10.44□□□□□ -0.74
USP54-212ENST00000480210 SH3TC1Q8TE82 1336 aa10.44□□□□□ -0.74
USP54-212ENST00000480210 BCAR3O75815 825 aa10.44□□□□□ -0.74
USP54-212ENST00000480210 PCCAP05165 728 aaPredicted RBP10.44□□□□□ -0.74
USP54-212ENST00000480210 PDE6BP35913 854 aa10.44□□□□□ -0.74
USP54-212ENST00000480210 DDR1Q08345 913 aa10.44□□□□□ -0.74
USP54-212ENST00000480210 BEND3Q5T5X7 828 aa10.44□□□□□ -0.74
USP54-212ENST00000480210 SUSD4Q5VX71 490 aa10.44□□□□□ -0.74
USP54-212ENST00000480210 ZBTB38Q8NAP3 1195 aaPredicted RBP10.44□□□□□ -0.74
USP54-212ENST00000480210 BRIP1Q9BX63 1249 aa10.44□□□□□ -0.74
USP54-212ENST00000480210 BCL2L13Q9BXK5 485 aa10.44□□□□□ -0.74
USP54-212ENST00000480210 CHMP4BQ9H444 224 aaKnown RBP10.44□□□□□ -0.74
USP54-212ENST00000480210 TRMT112Q9UI30 125 aaKnown RBP10.44□□□□□ -0.74
USP54-212ENST00000480210 CDHR2Q9BYE9 1310 aa10.43□□□□□ -0.74
USP54-212ENST00000480210 NEURL1BA8MQ27 555 aa10.43□□□□□ -0.74
USP54-212ENST00000480210 GPTP24298 496 aa10.43□□□□□ -0.74
USP54-212ENST00000480210 INTS3Q68E01 1043 aaKnown RBP10.43□□□□□ -0.74
USP54-212ENST00000480210 PRR5LQ6MZQ0 368 aa10.43□□□□□ -0.74
USP54-212ENST00000480210 SLC4A10Q6U841 1118 aa10.43□□□□□ -0.74
USP54-212ENST00000480210 FRAT1Q92837 279 aaPredicted RBP10.43□□□□□ -0.74
USP54-212ENST00000480210 NLRP3Q96P20 1036 aa10.43□□□□□ -0.74
USP54-212ENST00000480210 UBN2Q6ZU65 1347 aa10.42□□□□□ -0.74
USP54-212ENST00000480210 ATP5J2-PTCD1G3V325 749 aa10.42□□□□□ -0.74
USP54-212ENST00000480210 H7C1W4 665 aa10.42□□□□□ -0.74
USP54-212ENST00000480210 NTSR2O95665 410 aa10.42□□□□□ -0.74
USP54-212ENST00000480210 IGKV5-2P06315 115 aa10.42□□□□□ -0.74
USP54-212ENST00000480210 GCKRQ14397 625 aa10.42□□□□□ -0.74
USP54-212ENST00000480210 PDE3AQ14432 1141 aa10.42□□□□□ -0.74
USP54-212ENST00000480210 FTSJ3Q8IY81 847 aaKnown RBP10.42□□□□□ -0.74
USP54-212ENST00000480210 DZIP1LQ8IYY4 767 aaKnown RBP10.42□□□□□ -0.74
USP54-212ENST00000480210 ABCC4O15439 1325 aa10.41□□□□□ -0.74
USP54-212ENST00000480210 KLRG2A4D1S0 409 aaPredicted RBP10.41□□□□□ -0.74
USP54-212ENST00000480210 F6X3S4 739 aa10.41□□□□□ -0.74
USP54-212ENST00000480210 TRIM27P14373 513 aa10.41□□□□□ -0.74
USP54-212ENST00000480210 PLA2G12BQ9BX93 195 aa10.41□□□□□ -0.74
USP54-212ENST00000480210 C9orf78Q9NZ63 289 aaPredicted RBP10.41□□□□□ -0.74
USP54-212ENST00000480210 LAMB2P55268 1798 aa10.41□□□□□ -0.74
USP54-212ENST00000480210 C10orf71Q711Q0 1435 aa10.41□□□□□ -0.74
USP54-212ENST00000480210 ANKRD31Q8N7Z5 1873 aa10.4□□□□□ -0.74
USP54-212ENST00000480210 UTYO14607 1347 aa10.4□□□□□ -0.74
USP54-212ENST00000480210 H0YIN7 160 aa10.4□□□□□ -0.74
USP54-212ENST00000480210 GRM8O00222 908 aa10.4□□□□□ -0.74
USP54-212ENST00000480210 PDE8AO60658 829 aa10.4□□□□□ -0.74
USP54-212ENST00000480210 ALDH1B1P30837 517 aa10.4□□□□□ -0.74
USP54-212ENST00000480210 DLEC1Q9Y238 1755 aa10.39□□□□□ -0.75
USP54-212ENST00000480210 FAM177BA6PVY3 158 aa10.39□□□□□ -0.75
USP54-212ENST00000480210 IRS4O14654 1257 aaPredicted RBP10.39□□□□□ -0.75
USP54-212ENST00000480210 GNAI3P08754 354 aa10.39□□□□□ -0.75
USP54-212ENST00000480210 SF3B3Q15393 1217 aaKnown RBP10.39□□□□□ -0.75
USP54-212ENST00000480210 CWF19L2Q2TBE0 894 aaKnown RBP10.39□□□□□ -0.75
USP54-212ENST00000480210 ERFEQ4G0M1 354 aa10.39□□□□□ -0.75
USP54-212ENST00000480210 STYK1Q6J9G0 422 aa10.39□□□□□ -0.75
USP54-212ENST00000480210 CNKSR1Q969H4 720 aa10.39□□□□□ -0.75
USP54-212ENST00000480210 FAM89AQ96GI7 184 aa10.39□□□□□ -0.75
USP54-212ENST00000480210 MASTLQ96GX5 879 aa10.39□□□□□ -0.75
USP54-212ENST00000480210 SYT17Q9BSW7 474 aa10.39□□□□□ -0.75
USP54-212ENST00000480210 DDX60Q8IY21 1712 aaKnown RBP10.38□□□□□ -0.75
USP54-212ENST00000480210 DCAF8L1A6NGE4 600 aa10.38□□□□□ -0.75
USP54-212ENST00000480210 NPR1P16066 1061 aa10.38□□□□□ -0.75
USP54-212ENST00000480210 CRY2Q49AN0 593 aa10.38□□□□□ -0.75
USP54-212ENST00000480210 GRIPAP1Q4V328 841 aa10.38□□□□□ -0.75
USP54-212ENST00000480210 NUTM1Q86Y26 1132 aa10.38□□□□□ -0.75
USP54-212ENST00000480210 RBM17Q96I25 401 aaKnown RBP10.38□□□□□ -0.75
USP54-212ENST00000480210 FHDC1Q9C0D6 1143 aaPredicted RBP10.38□□□□□ -0.75
USP54-212ENST00000480210 PIM2Q9P1W9 311 aa10.38□□□□□ -0.75
USP54-212ENST00000480210 BRCA1P38398 1863 aaKnown RBP10.38□□□□□ -0.75
USP54-212ENST00000480210 SRGNP10124 158 aa10.37□□□□□ -0.75
USP54-212ENST00000480210 HOXA10P31260 410 aaPredicted RBP10.37□□□□□ -0.75
USP54-212ENST00000480210 CASP7P55210 303 aa10.37□□□□□ -0.75
USP54-212ENST00000480210 AAMPQ13685 434 aa10.37□□□□□ -0.75
USP54-212ENST00000480210 CCDC152Q4G0S7 254 aa10.37□□□□□ -0.75
USP54-212ENST00000480210 TMC4Q7Z404 712 aa10.37□□□□□ -0.75
USP54-212ENST00000480210 C2CD5Q86YS7 1000 aa10.37□□□□□ -0.75
USP54-212ENST00000480210 RPGRQ92834 1020 aaKnown RBP10.37□□□□□ -0.75
USP54-212ENST00000480210 CRAMP1Q96RY5 1269 aa10.37□□□□□ -0.75
USP54-212ENST00000480210 USP44Q9H0E7 712 aa10.37□□□□□ -0.75
USP54-212ENST00000480210 DDX19BQ9UMR2 479 aa10.37□□□□□ -0.75
USP54-212ENST00000480210 ARFGEF1Q9Y6D6 1849 aa10.37□□□□□ -0.75
USP54-212ENST00000480210 BBOX1O75936 387 aa10.36□□□□□ -0.75
USP54-212ENST00000480210 CSF1RP07333 972 aa10.36□□□□□ -0.75
USP54-212ENST00000480210 UBTFL1P0CB47 393 aaPredicted RBP10.36□□□□□ -0.75
USP54-212ENST00000480210 RRP1P56182 461 aaKnown RBP10.36□□□□□ -0.75
USP54-212ENST00000480210 SOGA3Q5TF21 947 aa10.36□□□□□ -0.75
USP54-212ENST00000480210 DDX46Q7L014 1031 aaKnown RBP10.36□□□□□ -0.75
USP54-212ENST00000480210 UBE3BQ7Z3V4 1068 aa10.36□□□□□ -0.75
USP54-212ENST00000480210 KLHL34Q8N239 644 aa10.36□□□□□ -0.75
USP54-212ENST00000480210 TMEM57Q8N5G2 664 aa10.36□□□□□ -0.75
USP54-212ENST00000480210 CLUAP1Q96AJ1 413 aa10.36□□□□□ -0.75
USP54-212ENST00000480210 TMX4Q9H1E5 349 aaPredicted RBP10.36□□□□□ -0.75
USP54-212ENST00000480210 KIAA1551Q9HCM1 1747 aa10.36□□□□□ -0.75
USP54-212ENST00000480210 HCLS1P14317 486 aaPredicted RBP10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms