RNA–Protein interactions for RNA: ENST00000478603.5

C9orf3-216, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 802 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-216ENST00000478603 C3orf67Q6ZVT6 689 aa29.8■■■□□ 2.36
C9orf3-216ENST00000478603 PPP1R42Q7Z4L9 355 aa29.8■■■□□ 2.36
C9orf3-216ENST00000478603 RPGRQ92834 1020 aaKnown RBP29.8■■■□□ 2.36
C9orf3-216ENST00000478603 PARP10Q53GL7 1025 aa29.79■■■□□ 2.36
C9orf3-216ENST00000478603 RTKN2Q8IZC4 609 aa29.79■■■□□ 2.36
C9orf3-216ENST00000478603 DNAJC5GQ8N7S2 189 aa29.79■■■□□ 2.36
C9orf3-216ENST00000478603 DDX21Q9NR30 783 aaKnown RBP eCLIP29.78■■■□□ 2.36
C9orf3-216ENST00000478603 HOXA10P31260 410 aaPredicted RBP29.77■■■□□ 2.36
C9orf3-216ENST00000478603 CHPF2Q9P2E5 772 aa29.77■■■□□ 2.36
C9orf3-216ENST00000478603 APAF1O14727 1248 aa29.76■■■□□ 2.35
C9orf3-216ENST00000478603 SLC51AQ86UW1 340 aa29.76■■■□□ 2.35
C9orf3-216ENST00000478603 SYNE4Q8N205 404 aa29.76■■■□□ 2.35
C9orf3-216ENST00000478603 CFAP44Q96MT7 982 aa29.76■■■□□ 2.35
C9orf3-216ENST00000478603 UTP14AQ9BVJ6 771 aaKnown RBP29.76■■■□□ 2.35
C9orf3-216ENST00000478603 SNED1Q8TER0 1413 aa29.76■■■□□ 2.35
C9orf3-216ENST00000478603 HDGFL1Q5TGJ6 251 aa29.75■■■□□ 2.35
C9orf3-216ENST00000478603 RBM17Q96I25 401 aaKnown RBP29.74■■■□□ 2.35
C9orf3-216ENST00000478603 MBIPQ9NS73 344 aa29.74■■■□□ 2.35
C9orf3-216ENST00000478603 LAMB2P55268 1798 aa29.73■■■□□ 2.35
C9orf3-216ENST00000478603 TCERG1O14776 1098 aaKnown RBP29.73■■■□□ 2.35
C9orf3-216ENST00000478603 IARSP41252 1262 aaKnown RBP29.73■■■□□ 2.35
C9orf3-216ENST00000478603 ZNF541Q9H0D2 1346 aa29.72■■■□□ 2.35
C9orf3-216ENST00000478603 HSP90AB3PQ58FF7 597 aa29.72■■■□□ 2.35
C9orf3-216ENST00000478603 NLRP10Q86W26 655 aa29.72■■■□□ 2.35
C9orf3-216ENST00000478603 NLRP3Q96P20 1036 aa29.72■■■□□ 2.35
C9orf3-216ENST00000478603 CRAMP1Q96RY5 1269 aa29.72■■■□□ 2.35
C9orf3-216ENST00000478603 HOXB7P09629 217 aa29.71■■■□□ 2.35
C9orf3-216ENST00000478603 TCIRG1Q13488 830 aa29.71■■■□□ 2.35
C9orf3-216ENST00000478603 SLC10A5Q5PT55 438 aa29.71■■■□□ 2.35
C9orf3-216ENST00000478603 DUSP27Q5VZP5 1158 aa29.71■■■□□ 2.35
C9orf3-216ENST00000478603 ZNF428Q96B54 188 aa29.71■■■□□ 2.35
C9orf3-216ENST00000478603 PPEF1O14829 653 aaPredicted RBP29.7■■■□□ 2.35
C9orf3-216ENST00000478603 CCDC184Q52MB2 194 aa29.7■■■□□ 2.35
C9orf3-216ENST00000478603 PSMD1Q99460 953 aa29.7■■■□□ 2.35
C9orf3-216ENST00000478603 ZNF853P0CG23 659 aa29.69■■■□□ 2.34
C9orf3-216ENST00000478603 POTEIP0CG38 1075 aa29.69■■■□□ 2.34
C9orf3-216ENST00000478603 POTEJP0CG39 1038 aa29.69■■■□□ 2.34
C9orf3-216ENST00000478603 CC2D2BQ6DHV5 1058 aa29.69■■■□□ 2.34
C9orf3-216ENST00000478603 SCN4AP35499 1836 aa29.68■■■□□ 2.34
C9orf3-216ENST00000478603 HCLS1P14317 486 aaPredicted RBP29.68■■■□□ 2.34
C9orf3-216ENST00000478603 DBF4Q9UBU7 674 aaPredicted RBP29.68■■■□□ 2.34
C9orf3-216ENST00000478603 COL4A5P29400 1685 aa29.67■■■□□ 2.34
C9orf3-216ENST00000478603 KLRG1Q96E93 195 aa29.67■■■□□ 2.34
C9orf3-216ENST00000478603 L3MBTL3Q96JM7 780 aaPredicted RBP29.67■■■□□ 2.34
C9orf3-216ENST00000478603 TRMT112Q9UI30 125 aaKnown RBP29.67■■■□□ 2.34
C9orf3-216ENST00000478603 PLBD2Q8NHP8 589 aa29.66■■■□□ 2.34
C9orf3-216ENST00000478603 IFT57Q9NWB7 429 aa29.66■■■□□ 2.34
C9orf3-216ENST00000478603 RNF123Q5XPI4 1314 aa29.66■■■□□ 2.34
C9orf3-216ENST00000478603 FZD9O00144 591 aa29.65■■■□□ 2.34
C9orf3-216ENST00000478603 ANKRD13DQ6ZTN6 518 aa29.65■■■□□ 2.34
C9orf3-216ENST00000478603 TAF1P21675 1872 aa29.65■■■□□ 2.34
C9orf3-216ENST00000478603 ABCC4O15439 1325 aa29.65■■■□□ 2.34
C9orf3-216ENST00000478603 IQCA1LA6NCM1 817 aa29.64■■■□□ 2.34
C9orf3-216ENST00000478603 ELL2O00472 640 aaPredicted RBP29.64■■■□□ 2.34
C9orf3-216ENST00000478603 GNAI1P63096 354 aa29.64■■■□□ 2.34
C9orf3-216ENST00000478603 SH3TC1Q8TE82 1336 aa29.64■■■□□ 2.34
C9orf3-216ENST00000478603 CHADLQ6NUI6 762 aa29.63■■■□□ 2.33
C9orf3-216ENST00000478603 JDP2Q8WYK2 163 aa29.63■■■□□ 2.33
C9orf3-216ENST00000478603 TAF1DQ9H5J8 278 aaPredicted RBP29.63■■■□□ 2.33
C9orf3-216ENST00000478603 HYPKQ9NX55 129 aa29.63■■■□□ 2.33
C9orf3-216ENST00000478603 CALD1Q05682 793 aaKnown RBP29.62■■■□□ 2.33
C9orf3-216ENST00000478603 DDX60Q8IY21 1712 aaKnown RBP29.62■■■□□ 2.33
C9orf3-216ENST00000478603 ATP5J2-PTCD1G3V325 749 aa29.61■■■□□ 2.33
C9orf3-216ENST00000478603 GRIPAP1Q4V328 841 aa29.61■■■□□ 2.33
C9orf3-216ENST00000478603 ATP6V0A2Q9Y487 856 aa29.61■■■□□ 2.33
C9orf3-216ENST00000478603 ZEB1P37275 1124 aaPredicted RBP29.6■■■□□ 2.33
C9orf3-216ENST00000478603 LARGE2Q8N3Y3 721 aa29.6■■■□□ 2.33
C9orf3-216ENST00000478603 ISCA1Q9BUE6 129 aa29.6■■■□□ 2.33
C9orf3-216ENST00000478603 HACL1Q9UJ83 578 aa29.59■■■□□ 2.33
C9orf3-216ENST00000478603 EAPPQ56P03 285 aaPredicted RBP29.58■■■□□ 2.33
C9orf3-216ENST00000478603 C8orf58Q8NAV2 365 aa29.58■■■□□ 2.33
C9orf3-216ENST00000478603 TMX4Q9H1E5 349 aaPredicted RBP29.58■■■□□ 2.33
C9orf3-216ENST00000478603 PHAXQ9H814 394 aaKnown RBP29.58■■■□□ 2.33
C9orf3-216ENST00000478603 EIF6P56537 245 aaKnown RBP29.57■■■□□ 2.32
C9orf3-216ENST00000478603 DDX46Q7L014 1031 aaKnown RBP29.57■■■□□ 2.32
C9orf3-216ENST00000478603 LDHDQ86WU2 507 aa29.57■■■□□ 2.32
C9orf3-216ENST00000478603 GPC2Q8N158 579 aa29.57■■■□□ 2.32
C9orf3-216ENST00000478603 FAM89AQ96GI7 184 aa29.57■■■□□ 2.32
C9orf3-216ENST00000478603 GJA3Q9Y6H8 435 aa29.57■■■□□ 2.32
C9orf3-216ENST00000478603 JMYQ8N9B5 988 aa29.56■■■□□ 2.32
C9orf3-216ENST00000478603 PPIP5K2O43314 1243 aa29.55■■■□□ 2.32
C9orf3-216ENST00000478603 BBOX1O75936 387 aa29.55■■■□□ 2.32
C9orf3-216ENST00000478603 EPHX2P34913 555 aa29.55■■■□□ 2.32
C9orf3-216ENST00000478603 AOC3Q16853 763 aa29.55■■■□□ 2.32
C9orf3-216ENST00000478603 RTL5Q5HYW3 569 aaPredicted RBP29.55■■■□□ 2.32
C9orf3-216ENST00000478603 GRAPQ13588 217 aa29.54■■■□□ 2.32
C9orf3-216ENST00000478603 RIC3Q7Z5B4 369 aa29.54■■■□□ 2.32
C9orf3-216ENST00000478603 SP8Q8IXZ3 490 aa29.54■■■□□ 2.32
C9orf3-216ENST00000478603 GRAPLQ8TC17 118 aaPredicted RBP29.54■■■□□ 2.32
C9orf3-216ENST00000478603 ADAMTSL1Q8N6G6 1762 aa29.54■■■□□ 2.32
C9orf3-216ENST00000478603 NIM1KQ8IY84 436 aa29.53■■■□□ 2.32
C9orf3-216ENST00000478603 LTBP1Q14766 1721 aa29.53■■■□□ 2.32
C9orf3-216ENST00000478603 GOLGA2Q08379 1002 aa29.52■■■□□ 2.32
C9orf3-216ENST00000478603 TSPYL6Q8N831 410 aa29.52■■■□□ 2.32
C9orf3-216ENST00000478603 CLEC11AQ9Y240 323 aa29.52■■■□□ 2.32
C9orf3-216ENST00000478603 DPP8Q6V1X1 898 aaPredicted RBP29.51■■■□□ 2.31
C9orf3-216ENST00000478603 MPNDQ8N594 471 aa29.51■■■□□ 2.31
C9orf3-216ENST00000478603 TSR2Q969E8 191 aaKnown RBP29.51■■■□□ 2.31
C9orf3-216ENST00000478603 RTFDC1Q9BY42 306 aaPredicted RBP29.51■■■□□ 2.31
C9orf3-216ENST00000478603 ZNF316A6NFI3 1004 aaPredicted RBP29.5■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms