RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 GRIN2CQ14957 1233 aa8.7□□□□□ -1.02
VPS50-214ENST00000477935 IFT43Q96FT9 208 aa8.7□□□□□ -1.02
VPS50-214ENST00000477935 SEPT3Q9UH03 358 aa8.7□□□□□ -1.02
VPS50-214ENST00000477935 IDH3AP50213 366 aa8.69□□□□□ -1.02
VPS50-214ENST00000477935 PHLDB3Q6NSJ2 640 aa8.69□□□□□ -1.02
VPS50-214ENST00000477935 STK17AQ9UEE5 414 aa8.69□□□□□ -1.02
VPS50-214ENST00000477935 KCNH4Q9UQ05 1017 aa8.69□□□□□ -1.02
VPS50-214ENST00000477935 FAM181BA6NEQ2 426 aa8.68□□□□□ -1.02
VPS50-214ENST00000477935 MICAL2O94851 1124 aa8.68□□□□□ -1.02
VPS50-214ENST00000477935 ARAFP10398 606 aa8.68□□□□□ -1.02
VPS50-214ENST00000477935 BCRP11274 1271 aa8.68□□□□□ -1.02
VPS50-214ENST00000477935 BRD2P25440 801 aaKnown RBP8.68□□□□□ -1.02
VPS50-214ENST00000477935 ZNF468Q5VIY5 522 aaPredicted RBP8.68□□□□□ -1.02
VPS50-214ENST00000477935 GOLGA6L1Q8N7Z2 621 aa8.68□□□□□ -1.02
VPS50-214ENST00000477935 AVENQ9NQS1 362 aaPredicted RBP8.68□□□□□ -1.02
VPS50-214ENST00000477935 GDF2Q9UK05 429 aaPredicted RBP8.68□□□□□ -1.02
VPS50-214ENST00000477935 PRR12Q9ULL5 1215 aa8.68□□□□□ -1.02
VPS50-214ENST00000477935 TNFRSF10BO14763 440 aa8.67□□□□□ -1.02
VPS50-214ENST00000477935 INPP5BP32019 993 aa8.67□□□□□ -1.02
VPS50-214ENST00000477935 MAP3K10Q02779 954 aa8.67□□□□□ -1.02
VPS50-214ENST00000477935 SPEM2Q0P670 501 aa8.67□□□□□ -1.02
VPS50-214ENST00000477935 FAM26DQ5JW98 314 aa8.67□□□□□ -1.02
VPS50-214ENST00000477935 TREML1Q86YW5 311 aa8.67□□□□□ -1.02
VPS50-214ENST00000477935 SLC30A3Q99726 388 aa8.67□□□□□ -1.02
VPS50-214ENST00000477935 LRRC4BQ9NT99 713 aa8.67□□□□□ -1.02
VPS50-214ENST00000477935 GGA1Q9UJY5 639 aa8.67□□□□□ -1.02
VPS50-214ENST00000477935 OIP5O43482 229 aa8.66□□□□□ -1.02
VPS50-214ENST00000477935 ARHGEF15O94989 841 aa8.66□□□□□ -1.02
VPS50-214ENST00000477935 GRNP28799 593 aaKnown RBP8.66□□□□□ -1.02
VPS50-214ENST00000477935 ARSDP51689 593 aa8.66□□□□□ -1.02
VPS50-214ENST00000477935 PCBP4P57723 403 aaKnown RBP8.66□□□□□ -1.02
VPS50-214ENST00000477935 SLCO4C1Q6ZQN7 724 aa8.66□□□□□ -1.02
VPS50-214ENST00000477935 C1orf229Q6ZS94 237 aaPredicted RBP8.66□□□□□ -1.02
VPS50-214ENST00000477935 ETFBKMTQ8IXQ9 262 aa8.66□□□□□ -1.02
VPS50-214ENST00000477935 KLF15Q9UIH9 416 aa8.66□□□□□ -1.02
VPS50-214ENST00000477935 NEURL1BA8MQ27 555 aa8.65□□□□□ -1.02
VPS50-214ENST00000477935 EPB42P16452 691 aa8.65□□□□□ -1.02
VPS50-214ENST00000477935 ADH6P28332 368 aa8.65□□□□□ -1.02
VPS50-214ENST00000477935 RAB44Q7Z6P3 723 aaPredicted RBP8.65□□□□□ -1.02
VPS50-214ENST00000477935 SYT9Q86SS6 491 aa8.65□□□□□ -1.02
VPS50-214ENST00000477935 GALNT6Q8NCL4 622 aa8.65□□□□□ -1.02
VPS50-214ENST00000477935 STIM2Q9P246 746 aa8.65□□□□□ -1.02
VPS50-214ENST00000477935 DNMT3AQ9Y6K1 912 aaPredicted RBP8.65□□□□□ -1.02
VPS50-214ENST00000477935 NESP48681 1621 aa8.65□□□□□ -1.03
VPS50-214ENST00000477935 OPLAHO14841 1288 aa8.64□□□□□ -1.03
VPS50-214ENST00000477935 PDE4CQ08493 712 aa8.64□□□□□ -1.03
VPS50-214ENST00000477935 B4GALNT3Q6L9W6 998 aa8.64□□□□□ -1.03
VPS50-214ENST00000477935 HELQQ8TDG4 1101 aa8.64□□□□□ -1.03
VPS50-214ENST00000477935 ENAMQ9NRM1 1142 aa8.64□□□□□ -1.03
VPS50-214ENST00000477935 SHISA8B8ZZ34 492 aa8.63□□□□□ -1.03
VPS50-214ENST00000477935 FCHSD1Q86WN1 690 aa8.63□□□□□ -1.03
VPS50-214ENST00000477935 GTF3C2Q8WUA4 911 aaPredicted RBP8.63□□□□□ -1.03
VPS50-214ENST00000477935 EDARADDQ8WWZ3 215 aa8.63□□□□□ -1.03
VPS50-214ENST00000477935 ADAMTS8Q9UP79 889 aa8.63□□□□□ -1.03
VPS50-214ENST00000477935 PDS5BQ9NTI5 1447 aa8.63□□□□□ -1.03
VPS50-214ENST00000477935 THOC2Q8NI27 1593 aaKnown RBP8.62□□□□□ -1.03
VPS50-214ENST00000477935 EPXP11678 715 aa8.62□□□□□ -1.03
VPS50-214ENST00000477935 NEUROD1Q13562 356 aa8.62□□□□□ -1.03
VPS50-214ENST00000477935 RGL4Q8IZJ4 473 aa8.62□□□□□ -1.03
VPS50-214ENST00000477935 ABTB2Q8N961 1025 aa8.62□□□□□ -1.03
VPS50-214ENST00000477935 BHMTQ93088 406 aa8.62□□□□□ -1.03
VPS50-214ENST00000477935 GSX2Q9BZM3 304 aa8.62□□□□□ -1.03
VPS50-214ENST00000477935 MTMR7Q9Y216 660 aa8.62□□□□□ -1.03
VPS50-214ENST00000477935 USP20Q9Y2K6 914 aa8.62□□□□□ -1.03
VPS50-214ENST00000477935 SIN3BO75182 1162 aa8.61□□□□□ -1.03
VPS50-214ENST00000477935 ZAP70P43403 619 aa8.61□□□□□ -1.03
VPS50-214ENST00000477935 CCINQ13939 588 aa8.61□□□□□ -1.03
VPS50-214ENST00000477935 NEDD1Q8NHV4 660 aa8.61□□□□□ -1.03
VPS50-214ENST00000477935 RTCBQ9Y3I0 505 aaKnown RBP8.61□□□□□ -1.03
VPS50-214ENST00000477935 ZBTB39O15060 712 aa8.6□□□□□ -1.03
VPS50-214ENST00000477935 MTMR3Q13615 1198 aa8.6□□□□□ -1.03
VPS50-214ENST00000477935 CMTR1Q8N1G2 835 aaKnown RBP8.6□□□□□ -1.03
VPS50-214ENST00000477935 EFCC1Q9HA90 598 aa8.6□□□□□ -1.03
VPS50-214ENST00000477935 C11orf16Q9NQ32 467 aa8.6□□□□□ -1.03
VPS50-214ENST00000477935 ATAD2BQ9ULI0 1458 aa8.59□□□□□ -1.03
VPS50-214ENST00000477935 TNFRSF25Q93038 417 aa8.59□□□□□ -1.03
VPS50-214ENST00000477935 PNMA5Q96PV4 448 aa8.59□□□□□ -1.03
VPS50-214ENST00000477935 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.59□□□□□ -1.03
VPS50-214ENST00000477935 KCNMB2Q9Y691 235 aa8.59□□□□□ -1.03
VPS50-214ENST00000477935 ABL1P00519 1130 aa8.58□□□□□ -1.04
VPS50-214ENST00000477935 NFKB1P19838 968 aa8.58□□□□□ -1.04
VPS50-214ENST00000477935 ARID4AP29374 1257 aaPredicted RBP8.58□□□□□ -1.04
VPS50-214ENST00000477935 MDFIQ99750 246 aa8.58□□□□□ -1.04
VPS50-214ENST00000477935 FAM13BQ9NYF5 915 aa8.58□□□□□ -1.04
VPS50-214ENST00000477935 ELOA3CA0A087WX78 387 aaPredicted RBP8.57□□□□□ -1.04
VPS50-214ENST00000477935 ELOA3DA6NLF2 546 aaPredicted RBP8.57□□□□□ -1.04
VPS50-214ENST00000477935 ADARB2-AS1A8MUL3 147 aa8.57□□□□□ -1.04
VPS50-214ENST00000477935 XYLBO75191 536 aa8.57□□□□□ -1.04
VPS50-214ENST00000477935 EGFRP00533 1210 aa8.57□□□□□ -1.04
VPS50-214ENST00000477935 MPSTP25325 297 aa8.57□□□□□ -1.04
VPS50-214ENST00000477935 ELOA3BQ3SY89 546 aa8.57□□□□□ -1.04
VPS50-214ENST00000477935 KRT25Q7Z3Z0 450 aa8.57□□□□□ -1.04
VPS50-214ENST00000477935 ATCAYQ86WG3 371 aa8.57□□□□□ -1.04
VPS50-214ENST00000477935 ELOA3Q8NG57 546 aa8.57□□□□□ -1.04
VPS50-214ENST00000477935 LAMC3Q9Y6N6 1575 aa8.56□□□□□ -1.04
VPS50-214ENST00000477935 SASH3O75995 380 aa8.56□□□□□ -1.04
VPS50-214ENST00000477935 AMPD1P23109 780 aa8.56□□□□□ -1.04
VPS50-214ENST00000477935 TARSP26639 723 aaKnown RBP8.56□□□□□ -1.04
VPS50-214ENST00000477935 MARSP56192 900 aaKnown RBP8.56□□□□□ -1.04
VPS50-214ENST00000477935 ZNF211Q13398 564 aaPredicted RBP8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms