RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 PRAM1Q96QH2 718 aa9.87□□□□□ -0.83
CCDC88A-213ENST00000476903 ADGRB2O60241 1585 aa9.87□□□□□ -0.83
CCDC88A-213ENST00000476903 KIAA1210Q9ULL0 1709 aa9.87□□□□□ -0.83
CCDC88A-213ENST00000476903 IGHA1P01876 353 aa9.86□□□□□ -0.83
CCDC88A-213ENST00000476903 RTL5Q5HYW3 569 aaPredicted RBP9.86□□□□□ -0.83
CCDC88A-213ENST00000476903 POGKQ9P215 609 aa9.86□□□□□ -0.83
CCDC88A-213ENST00000476903 ARHGEF28Q8N1W1 1705 aaKnown RBP9.85□□□□□ -0.83
CCDC88A-213ENST00000476903 MARF1Q9Y4F3 1742 aaKnown RBP9.85□□□□□ -0.83
CCDC88A-213ENST00000476903 SENP3-EIF4A1A0A087X0R7 540 aa9.85□□□□□ -0.83
CCDC88A-213ENST00000476903 FOXO3O43524 673 aa9.85□□□□□ -0.83
CCDC88A-213ENST00000476903 CTSOP43234 321 aaPredicted RBP9.85□□□□□ -0.83
CCDC88A-213ENST00000476903 SAFB2Q14151 953 aaKnown RBP eCLIP9.85□□□□□ -0.83
CCDC88A-213ENST00000476903 TSC1Q92574 1164 aa9.85□□□□□ -0.83
CCDC88A-213ENST00000476903 TRAK1Q9UPV9 953 aa9.85□□□□□ -0.83
CCDC88A-213ENST00000476903 AFF2P51816 1311 aa9.84□□□□□ -0.83
CCDC88A-213ENST00000476903 SV2AQ7L0J3 742 aa9.84□□□□□ -0.83
CCDC88A-213ENST00000476903 GPKOWQ92917 476 aaPredicted RBP eCLIP9.84□□□□□ -0.83
CCDC88A-213ENST00000476903 C8orf37Q96NL8 207 aa9.84□□□□□ -0.83
CCDC88A-213ENST00000476903 PGPEP1Q9NXJ5 209 aa9.84□□□□□ -0.83
CCDC88A-213ENST00000476903 ANKARQ7Z5J8 1434 aa9.83□□□□□ -0.84
CCDC88A-213ENST00000476903 USP32Q8NFA0 1604 aa9.83□□□□□ -0.84
CCDC88A-213ENST00000476903 XPCQ01831 940 aaPredicted RBP9.83□□□□□ -0.84
CCDC88A-213ENST00000476903 KANK3Q6NY19 840 aa9.83□□□□□ -0.84
CCDC88A-213ENST00000476903 LYPD4Q6UWN0 246 aa9.83□□□□□ -0.84
CCDC88A-213ENST00000476903 AGBL1Q96MI9 1066 aa9.83□□□□□ -0.84
CCDC88A-213ENST00000476903 CARD14Q9BXL6 1004 aa9.83□□□□□ -0.84
CCDC88A-213ENST00000476903 EIF3AQ14152 1382 aaKnown RBP9.83□□□□□ -0.84
CCDC88A-213ENST00000476903 ADAMTS2O95450 1211 aa9.82□□□□□ -0.84
CCDC88A-213ENST00000476903 RXRBP28702 533 aa9.82□□□□□ -0.84
CCDC88A-213ENST00000476903 ITSN1Q15811 1721 aa9.82□□□□□ -0.84
CCDC88A-213ENST00000476903 TULP4Q9NRJ4 1543 aa9.82□□□□□ -0.84
CCDC88A-213ENST00000476903 PSME1Q06323 249 aa9.81□□□□□ -0.84
CCDC88A-213ENST00000476903 NGLY1Q96IV0 654 aa9.81□□□□□ -0.84
CCDC88A-213ENST00000476903 KCTD15Q96SI1 283 aaPredicted RBP9.81□□□□□ -0.84
CCDC88A-213ENST00000476903 INSM2Q96T92 566 aaPredicted RBP9.81□□□□□ -0.84
CCDC88A-213ENST00000476903 CDK12Q9NYV4 1490 aaPredicted RBP9.8□□□□□ -0.84
CCDC88A-213ENST00000476903 CDC14CA4D256 554 aa9.8□□□□□ -0.84
CCDC88A-213ENST00000476903 FOXK2Q01167 660 aa9.8□□□□□ -0.84
CCDC88A-213ENST00000476903 GAS6Q14393 721 aa9.8□□□□□ -0.84
CCDC88A-213ENST00000476903 KRT28Q7Z3Y7 464 aa9.8□□□□□ -0.84
CCDC88A-213ENST00000476903 RNF217Q8TC41 542 aa9.8□□□□□ -0.84
CCDC88A-213ENST00000476903 OCSTAMPQ9BR26 566 aa9.8□□□□□ -0.84
CCDC88A-213ENST00000476903 HIRIP3Q9BW71 556 aaPredicted RBP9.8□□□□□ -0.84
CCDC88A-213ENST00000476903 SPATA31A3Q5VYP0 1347 aa9.8□□□□□ -0.84
CCDC88A-213ENST00000476903 MARSP56192 900 aaKnown RBP9.79□□□□□ -0.84
CCDC88A-213ENST00000476903 PDXDC2PQ6P474 469 aa9.79□□□□□ -0.84
CCDC88A-213ENST00000476903 QTRT2Q9H974 415 aaKnown RBP9.79□□□□□ -0.84
CCDC88A-213ENST00000476903 CUEDC1Q9NWM3 386 aaPredicted RBP9.79□□□□□ -0.84
CCDC88A-213ENST00000476903 TNS3Q68CZ2 1445 aa9.79□□□□□ -0.84
CCDC88A-213ENST00000476903 ABCA3Q99758 1704 aa9.79□□□□□ -0.84
CCDC88A-213ENST00000476903 TRPM3Q9HCF6 1732 aaPredicted RBP9.79□□□□□ -0.84
CCDC88A-213ENST00000476903 SBNO1A3KN83 1393 aa9.78□□□□□ -0.84
CCDC88A-213ENST00000476903 WASLO00401 505 aaPredicted RBP9.78□□□□□ -0.84
CCDC88A-213ENST00000476903 ITGB2P05107 769 aa9.78□□□□□ -0.84
CCDC88A-213ENST00000476903 RELBQ01201 579 aa9.78□□□□□ -0.84
CCDC88A-213ENST00000476903 INTS6LQ5JSJ4 861 aaKnown RBP9.78□□□□□ -0.84
CCDC88A-213ENST00000476903 HELBQ8NG08 1087 aaPredicted RBP9.78□□□□□ -0.84
CCDC88A-213ENST00000476903 SCARF2Q96GP6 870 aaPredicted RBP9.78□□□□□ -0.84
CCDC88A-213ENST00000476903 USP21Q9UK80 565 aa9.78□□□□□ -0.84
CCDC88A-213ENST00000476903 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.78□□□□□ -0.84
CCDC88A-213ENST00000476903 ARHGEF10O15013 1369 aa9.77□□□□□ -0.84
CCDC88A-213ENST00000476903 CELA2BP08218 269 aaPredicted RBP9.77□□□□□ -0.85
CCDC88A-213ENST00000476903 RBM6P78332 1123 aaKnown RBP9.77□□□□□ -0.85
CCDC88A-213ENST00000476903 SRSF11Q05519 484 aaKnown RBP9.77□□□□□ -0.85
CCDC88A-213ENST00000476903 FNBP4Q8N3X1 1017 aaPredicted RBP9.77□□□□□ -0.85
CCDC88A-213ENST00000476903 KDF1Q8NAX2 398 aaPredicted RBP9.77□□□□□ -0.85
CCDC88A-213ENST00000476903 PMFBP1Q8TBY8 1022 aa9.77□□□□□ -0.85
CCDC88A-213ENST00000476903 TRPC5Q9UL62 973 aaPredicted RBP9.77□□□□□ -0.85
CCDC88A-213ENST00000476903 ALS2Q96Q42 1657 aa9.77□□□□□ -0.85
CCDC88A-213ENST00000476903 QRICH2Q9H0J4 1663 aa9.77□□□□□ -0.85
CCDC88A-213ENST00000476903 GPRASP1Q5JY77 1395 aa9.76□□□□□ -0.85
CCDC88A-213ENST00000476903 TRPM1Q7Z4N2 1603 aa9.76□□□□□ -0.85
CCDC88A-213ENST00000476903 CTDSPL2Q05D32 466 aa9.76□□□□□ -0.85
CCDC88A-213ENST00000476903 NBPF1Q3BBV0 1214 aa9.76□□□□□ -0.85
CCDC88A-213ENST00000476903 XP32Q5T750 250 aa9.76□□□□□ -0.85
CCDC88A-213ENST00000476903 FOXD4L5Q5VV16 416 aaPredicted RBP9.76□□□□□ -0.85
CCDC88A-213ENST00000476903 L3MBTL2Q969R5 705 aa9.76□□□□□ -0.85
CCDC88A-213ENST00000476903 ATP7BP35670 1465 aa9.76□□□□□ -0.85
CCDC88A-213ENST00000476903 TOPAZ1Q8N9V7 1692 aa9.76□□□□□ -0.85
CCDC88A-213ENST00000476903 PRR36Q9H6K5 1346 aa9.76□□□□□ -0.85
CCDC88A-213ENST00000476903 RGS12O14924 1447 aa9.75□□□□□ -0.85
CCDC88A-213ENST00000476903 ATRNO75882 1429 aa9.75□□□□□ -0.85
CCDC88A-213ENST00000476903 PLCH1Q4KWH8 1693 aa9.75□□□□□ -0.85
CCDC88A-213ENST00000476903 DHX9Q08211 1270 aaKnown RBP9.75□□□□□ -0.85
CCDC88A-213ENST00000476903 SIN3AQ96ST3 1273 aa9.75□□□□□ -0.85
CCDC88A-213ENST00000476903 ARHGAP9Q9BRR9 750 aa9.75□□□□□ -0.85
CCDC88A-213ENST00000476903 ZNF395Q9H8N7 513 aaPredicted RBP9.75□□□□□ -0.85
CCDC88A-213ENST00000476903 CDV3Q9UKY7 258 aaKnown RBP9.75□□□□□ -0.85
CCDC88A-213ENST00000476903 NWD2Q9ULI1 1742 aa9.75□□□□□ -0.85
CCDC88A-213ENST00000476903 BCL9LQ86UU0 1499 aa9.74□□□□□ -0.85
CCDC88A-213ENST00000476903 NEUROD1Q13562 356 aa9.74□□□□□ -0.85
CCDC88A-213ENST00000476903 NGDNQ8NEJ9 315 aaKnown RBP9.74□□□□□ -0.85
CCDC88A-213ENST00000476903 AK7Q96M32 723 aa9.74□□□□□ -0.85
CCDC88A-213ENST00000476903 CDK19Q9BWU1 502 aa9.74□□□□□ -0.85
CCDC88A-213ENST00000476903 SLIT2O94813 1529 aa9.73□□□□□ -0.85
CCDC88A-213ENST00000476903 NUDT16Q96DE0 195 aaKnown RBP9.73□□□□□ -0.85
CCDC88A-213ENST00000476903 SLC10A4Q96EP9 437 aa9.73□□□□□ -0.85
CCDC88A-213ENST00000476903 POLMQ9NP87 494 aaPredicted RBP9.73□□□□□ -0.85
CCDC88A-213ENST00000476903 FKBPLQ9UIM3 349 aa9.73□□□□□ -0.85
CCDC88A-213ENST00000476903 CENPJQ9HC77 1338 aaPredicted RBP9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms