RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 CCDC93Q567U6 631 aa24.23■■□□□ 1.47
COL7A1-209ENST00000474432 ALDH1B1P30837 517 aa24.22■■□□□ 1.47
COL7A1-209ENST00000474432 AIMP1Q12904 312 aaKnown RBP24.22■■□□□ 1.47
COL7A1-209ENST00000474432 SLC10A5Q5PT55 438 aa24.21■■□□□ 1.47
COL7A1-209ENST00000474432 DUSP27Q5VZP5 1158 aa24.21■■□□□ 1.47
COL7A1-209ENST00000474432 SLC51AQ86UW1 340 aa24.21■■□□□ 1.47
COL7A1-209ENST00000474432 FKBP4Q02790 459 aaKnown RBP eCLIP24.2■■□□□ 1.46
COL7A1-209ENST00000474432 HDGFL1Q5TGJ6 251 aa24.2■■□□□ 1.46
COL7A1-209ENST00000474432 PPP1R42Q7Z4L9 355 aa24.2■■□□□ 1.46
COL7A1-209ENST00000474432 NLRP10Q86W26 655 aa24.2■■□□□ 1.46
COL7A1-209ENST00000474432 IFT57Q9NWB7 429 aa24.2■■□□□ 1.46
COL7A1-209ENST00000474432 LAMB2P55268 1798 aa24.2■■□□□ 1.46
COL7A1-209ENST00000474432 VEGFAP15692 232 aaPredicted RBP24.19■■□□□ 1.46
COL7A1-209ENST00000474432 TCIRG1Q13488 830 aa24.19■■□□□ 1.46
COL7A1-209ENST00000474432 C16orf71Q8IYS4 520 aaPredicted RBP24.19■■□□□ 1.46
COL7A1-209ENST00000474432 ZNF316A6NFI3 1004 aaPredicted RBP24.18■■□□□ 1.46
COL7A1-209ENST00000474432 FSTL1Q12841 308 aa24.18■■□□□ 1.46
COL7A1-209ENST00000474432 SYNE4Q8N205 404 aa24.18■■□□□ 1.46
COL7A1-209ENST00000474432 CRAMP1Q96RY5 1269 aa24.18■■□□□ 1.46
COL7A1-209ENST00000474432 UTP14AQ9BVJ6 771 aaKnown RBP24.18■■□□□ 1.46
COL7A1-209ENST00000474432 ZNF277Q9NRM2 450 aaPredicted RBP24.18■■□□□ 1.46
COL7A1-209ENST00000474432 DPY19L2Q6NUT2 758 aa24.17■■□□□ 1.46
COL7A1-209ENST00000474432 RTKN2Q8IZC4 609 aa24.17■■□□□ 1.46
COL7A1-209ENST00000474432 DBF4Q9UBU7 674 aaPredicted RBP24.17■■□□□ 1.46
COL7A1-209ENST00000474432 DDNO94850 711 aaPredicted RBP24.16■■□□□ 1.46
COL7A1-209ENST00000474432 APLP1P51693 650 aa24.16■■□□□ 1.46
COL7A1-209ENST00000474432 HSP90AB3PQ58FF7 597 aa24.16■■□□□ 1.46
COL7A1-209ENST00000474432 DNAJC5GQ8N7S2 189 aa24.16■■□□□ 1.46
COL7A1-209ENST00000474432 COL4A5P29400 1685 aa24.15■■□□□ 1.46
COL7A1-209ENST00000474432 GNAI1P63096 354 aa24.15■■□□□ 1.46
COL7A1-209ENST00000474432 PLBD2Q8NHP8 589 aa24.15■■□□□ 1.46
COL7A1-209ENST00000474432 RPGRQ92834 1020 aaKnown RBP24.15■■□□□ 1.46
COL7A1-209ENST00000474432 RNF123Q5XPI4 1314 aa24.14■■□□□ 1.46
COL7A1-209ENST00000474432 C8orf58Q8NAV2 365 aa24.14■■□□□ 1.45
COL7A1-209ENST00000474432 NLRP3Q96P20 1036 aa24.14■■□□□ 1.45
COL7A1-209ENST00000474432 PSMD1Q99460 953 aa24.14■■□□□ 1.45
COL7A1-209ENST00000474432 ISCA1Q9BUE6 129 aa24.14■■□□□ 1.45
COL7A1-209ENST00000474432 ANKRD13DQ6ZTN6 518 aa24.13■■□□□ 1.45
COL7A1-209ENST00000474432 RBM17Q96I25 401 aaKnown RBP24.13■■□□□ 1.45
COL7A1-209ENST00000474432 DDX60Q8IY21 1712 aaKnown RBP24.13■■□□□ 1.45
COL7A1-209ENST00000474432 ELL2O00472 640 aaPredicted RBP24.12■■□□□ 1.45
COL7A1-209ENST00000474432 HCLS1P14317 486 aaPredicted RBP24.12■■□□□ 1.45
COL7A1-209ENST00000474432 IARSP41252 1262 aaKnown RBP24.12■■□□□ 1.45
COL7A1-209ENST00000474432 CALD1Q05682 793 aaKnown RBP24.12■■□□□ 1.45
COL7A1-209ENST00000474432 CC2D2BQ6DHV5 1058 aa24.12■■□□□ 1.45
COL7A1-209ENST00000474432 SMC1BQ8NDV3 1235 aa24.12■■□□□ 1.45
COL7A1-209ENST00000474432 HYPKQ9NX55 129 aa24.12■■□□□ 1.45
COL7A1-209ENST00000474432 ZNF541Q9H0D2 1346 aa24.11■■□□□ 1.45
COL7A1-209ENST00000474432 TAF1P21675 1872 aa24.11■■□□□ 1.45
COL7A1-209ENST00000474432 HTRA3P83110 453 aa24.11■■□□□ 1.45
COL7A1-209ENST00000474432 ZNF428Q96B54 188 aa24.11■■□□□ 1.45
COL7A1-209ENST00000474432 PPEF1O14829 653 aaPredicted RBP24.1■■□□□ 1.45
COL7A1-209ENST00000474432 CCDC27Q2M243 656 aa24.1■■□□□ 1.45
COL7A1-209ENST00000474432 PHAXQ9H814 394 aaKnown RBP24.1■■□□□ 1.45
COL7A1-209ENST00000474432 TRMT112Q9UI30 125 aaKnown RBP24.1■■□□□ 1.45
COL7A1-209ENST00000474432 ABCC4O15439 1325 aa24.1■■□□□ 1.45
COL7A1-209ENST00000474432 SH3TC1Q8TE82 1336 aa24.1■■□□□ 1.45
COL7A1-209ENST00000474432 FZD9O00144 591 aa24.09■■□□□ 1.45
COL7A1-209ENST00000474432 TSPYL6Q8N831 410 aa24.09■■□□□ 1.45
COL7A1-209ENST00000474432 L3MBTL3Q96JM7 780 aaPredicted RBP24.09■■□□□ 1.45
COL7A1-209ENST00000474432 SCN4AP35499 1836 aa24.08■■□□□ 1.45
COL7A1-209ENST00000474432 ATP5J2-PTCD1G3V325 749 aa24.08■■□□□ 1.45
COL7A1-209ENST00000474432 TCERG1O14776 1098 aaKnown RBP24.08■■□□□ 1.45
COL7A1-209ENST00000474432 WWC1Q8IX03 1113 aa24.08■■□□□ 1.45
COL7A1-209ENST00000474432 POTEIP0CG38 1075 aa24.07■■□□□ 1.44
COL7A1-209ENST00000474432 POTEJP0CG39 1038 aa24.07■■□□□ 1.44
COL7A1-209ENST00000474432 TRIM28Q13263 835 aaKnown RBP24.07■■□□□ 1.44
COL7A1-209ENST00000474432 MRS2Q9HD23 443 aa24.07■■□□□ 1.44
COL7A1-209ENST00000474432 ATP6V0A2Q9Y487 856 aa24.07■■□□□ 1.44
COL7A1-209ENST00000474432 COL4A1P02462 1669 aa24.06■■□□□ 1.44
COL7A1-209ENST00000474432 TSR2Q969E8 191 aaKnown RBP24.06■■□□□ 1.44
COL7A1-209ENST00000474432 GRIPAP1Q4V328 841 aa24.05■■□□□ 1.44
COL7A1-209ENST00000474432 FAM89AQ96GI7 184 aa24.05■■□□□ 1.44
COL7A1-209ENST00000474432 ANP32CO43423 234 aa24.04■■□□□ 1.44
COL7A1-209ENST00000474432 NCBP3Q53F19 620 aaKnown RBP24.04■■□□□ 1.44
COL7A1-209ENST00000474432 BBOX1O75936 387 aa24.03■■□□□ 1.44
COL7A1-209ENST00000474432 TAF1DQ9H5J8 278 aaPredicted RBP24.03■■□□□ 1.44
COL7A1-209ENST00000474432 LRRC37AA6NMS7 1700 aa24.02■■□□□ 1.44
COL7A1-209ENST00000474432 ADAMTSL1Q8N6G6 1762 aa24.02■■□□□ 1.44
COL7A1-209ENST00000474432 SP8Q8IXZ3 490 aa24.02■■□□□ 1.44
COL7A1-209ENST00000474432 GRAPQ13588 217 aa24.01■■□□□ 1.43
COL7A1-209ENST00000474432 SF3B3Q15393 1217 aaKnown RBP24.01■■□□□ 1.43
COL7A1-209ENST00000474432 RIC3Q7Z5B4 369 aa24.01■■□□□ 1.43
COL7A1-209ENST00000474432 GRAPLQ8TC17 118 aaPredicted RBP24.01■■□□□ 1.43
COL7A1-209ENST00000474432 RTFDC1Q9BY42 306 aaPredicted RBP24.01■■□□□ 1.43
COL7A1-209ENST00000474432 LTBP1Q14766 1721 aa24.01■■□□□ 1.43
COL7A1-209ENST00000474432 DUOX1Q9NRD9 1551 aa24■■□□□ 1.43
COL7A1-209ENST00000474432 GOLGA2Q08379 1002 aa24■■□□□ 1.43
COL7A1-209ENST00000474432 CCDC30Q5VVM6 783 aa24■■□□□ 1.43
COL7A1-209ENST00000474432 CHADLQ6NUI6 762 aa24■■□□□ 1.43
COL7A1-209ENST00000474432 DDX46Q7L014 1031 aaKnown RBP24■■□□□ 1.43
COL7A1-209ENST00000474432 JDP2Q8WYK2 163 aa24■■□□□ 1.43
COL7A1-209ENST00000474432 IL16Q14005 1332 aa24■■□□□ 1.43
COL7A1-209ENST00000474432 IQCA1LA6NCM1 817 aa23.99■■□□□ 1.43
COL7A1-209ENST00000474432 RTL5Q5HYW3 569 aaPredicted RBP23.99■■□□□ 1.43
COL7A1-209ENST00000474432 GPC2Q8N158 579 aa23.99■■□□□ 1.43
COL7A1-209ENST00000474432 LARGE2Q8N3Y3 721 aa23.99■■□□□ 1.43
COL7A1-209ENST00000474432 KLRG1Q96E93 195 aa23.99■■□□□ 1.43
COL7A1-209ENST00000474432 MYD88Q99836 296 aa23.98■■□□□ 1.43
COL7A1-209ENST00000474432 IRS4O14654 1257 aaPredicted RBP23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms