RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 ADAMTSL1Q8N6G6 1762 aa12.56□□□□□ -0.4
VCL-204ENST00000472585 SCN7AQ01118 1682 aa12.55□□□□□ -0.4
VCL-204ENST00000472585 PRKAR2BP31323 418 aa12.55□□□□□ -0.4
VCL-204ENST00000472585 FKBP4Q02790 459 aaKnown RBP eCLIP12.55□□□□□ -0.4
VCL-204ENST00000472585 HLFQ16534 295 aa12.55□□□□□ -0.4
VCL-204ENST00000472585 REM2Q8IYK8 340 aaPredicted RBP12.55□□□□□ -0.4
VCL-204ENST00000472585 DDX21Q9NR30 783 aaKnown RBP eCLIP12.55□□□□□ -0.4
VCL-204ENST00000472585 ZNF277Q9NRM2 450 aaPredicted RBP12.55□□□□□ -0.4
VCL-204ENST00000472585 SSUH2Q9Y2M2 353 aa12.55□□□□□ -0.4
VCL-204ENST00000472585 TRPM7Q96QT4 1865 aa12.55□□□□□ -0.4
VCL-204ENST00000472585 CASP8AP2Q9UKL3 1982 aa12.54□□□□□ -0.4
VCL-204ENST00000472585 SIPA1L3O60292 1781 aaPredicted RBP12.54□□□□□ -0.4
VCL-204ENST00000472585 DCTN1Q14203 1278 aa12.54□□□□□ -0.4
VCL-204ENST00000472585 MCM10Q7L590 875 aa12.54□□□□□ -0.4
VCL-204ENST00000472585 NBPF5PQ86XG9 351 aaPredicted RBP12.54□□□□□ -0.4
VCL-204ENST00000472585 FAM177BA6PVY3 158 aa12.53□□□□□ -0.4
VCL-204ENST00000472585 NPR1P16066 1061 aa12.53□□□□□ -0.4
VCL-204ENST00000472585 LMOD1P29536 600 aaPredicted RBP12.53□□□□□ -0.4
VCL-204ENST00000472585 CYP4F22Q6NT55 531 aa12.53□□□□□ -0.4
VCL-204ENST00000472585 CLEC4GQ6UXB4 293 aa12.53□□□□□ -0.4
VCL-204ENST00000472585 RTKN2Q8IZC4 609 aa12.53□□□□□ -0.4
VCL-204ENST00000472585 GPC2Q8N158 579 aa12.53□□□□□ -0.4
VCL-204ENST00000472585 CCER1Q8TC90 406 aaPredicted RBP12.53□□□□□ -0.4
VCL-204ENST00000472585 JDP2Q8WYK2 163 aa12.53□□□□□ -0.4
VCL-204ENST00000472585 TSKSQ9UJT2 592 aa12.53□□□□□ -0.4
VCL-204ENST00000472585 NPC1L1Q9UHC9 1359 aa12.53□□□□□ -0.4
VCL-204ENST00000472585 TNRC18O15417 2968 aaPredicted RBP12.53□□□□□ -0.4
VCL-204ENST00000472585 SNRPA1P09661 255 aaKnown RBP12.52□□□□□ -0.41
VCL-204ENST00000472585 FMR1Q06787 632 aaKnown RBP eCLIP12.52□□□□□ -0.413e-12■□□□□ 8.4
VCL-204ENST00000472585 MCOLN1Q9GZU1 580 aa12.52□□□□□ -0.41
VCL-204ENST00000472585 MIS18AQ9NYP9 233 aa12.52□□□□□ -0.41
VCL-204ENST00000472585 SNED1Q8TER0 1413 aa12.52□□□□□ -0.41
VCL-204ENST00000472585 THSD7BQ9C0I4 1608 aa12.51□□□□□ -0.41
VCL-204ENST00000472585 FZD9O00144 591 aa12.51□□□□□ -0.41
VCL-204ENST00000472585 CA12O43570 354 aa12.51□□□□□ -0.41
VCL-204ENST00000472585 MAP2K2P36507 400 aa12.51□□□□□ -0.41
VCL-204ENST00000472585 IARSP41252 1262 aaKnown RBP12.51□□□□□ -0.41
VCL-204ENST00000472585 EIF6P56537 245 aaKnown RBP12.51□□□□□ -0.41
VCL-204ENST00000472585 SYNE4Q8N205 404 aa12.51□□□□□ -0.41
VCL-204ENST00000472585 NIP7Q9Y221 180 aaKnown RBP eCLIP12.51□□□□□ -0.41
VCL-204ENST00000472585 GJA3Q9Y6H8 435 aa12.51□□□□□ -0.41
VCL-204ENST00000472585 DGKZQ13574 1117 aa12.5□□□□□ -0.41
VCL-204ENST00000472585 TPTE2Q6XPS3 522 aa12.5□□□□□ -0.41
VCL-204ENST00000472585 COL4A5P29400 1685 aa12.5□□□□□ -0.41
VCL-204ENST00000472585 ALDH1B1P30837 517 aa12.49□□□□□ -0.41
VCL-204ENST00000472585 BCORQ6W2J9 1755 aa12.48□□□□□ -0.41
VCL-204ENST00000472585 AOC2O75106 756 aa12.48□□□□□ -0.41
VCL-204ENST00000472585 NUTM1Q86Y26 1132 aa12.48□□□□□ -0.41
VCL-204ENST00000472585 ZNF652Q9Y2D9 606 aa12.48□□□□□ -0.41
VCL-204ENST00000472585 TLL2Q9Y6L7 1015 aa12.48□□□□□ -0.41
VCL-204ENST00000472585 ABCC12Q96J65 1359 aa12.47□□□□□ -0.41
VCL-204ENST00000472585 GTF2E1P29083 439 aaPredicted RBP12.47□□□□□ -0.41
VCL-204ENST00000472585 PPP2R1AP30153 589 aa12.47□□□□□ -0.41
VCL-204ENST00000472585 CRY2Q49AN0 593 aa12.47□□□□□ -0.41
VCL-204ENST00000472585 CST9Q5W186 159 aa12.47□□□□□ -0.41
VCL-204ENST00000472585 TTLL7Q6ZT98 887 aa12.47□□□□□ -0.41
VCL-204ENST00000472585 C3orf67Q6ZVT6 689 aa12.47□□□□□ -0.41
VCL-204ENST00000472585 USP50Q70EL3 339 aaPredicted RBP12.47□□□□□ -0.41
VCL-204ENST00000472585 LTBP1Q14766 1721 aa12.46□□□□□ -0.41
VCL-204ENST00000472585 TRAF5O00463 557 aa12.46□□□□□ -0.41
VCL-204ENST00000472585 RGL2O15211 777 aa12.46□□□□□ -0.41
VCL-204ENST00000472585 U2AF1L5P0DN76 240 aaPredicted RBP12.46□□□□□ -0.41
VCL-204ENST00000472585 EPS15P42566 896 aa12.46□□□□□ -0.41
VCL-204ENST00000472585 U2AF1Q01081 240 aaKnown RBP eCLIP12.46□□□□□ -0.41
VCL-204ENST00000472585 TAF7Q15545 349 aaPredicted RBP12.46□□□□□ -0.41
VCL-204ENST00000472585 NGEFQ8N5V2 710 aa12.46□□□□□ -0.41
VCL-204ENST00000472585 PSMD1Q99460 953 aa12.46□□□□□ -0.41
VCL-204ENST00000472585 UBN2Q6ZU65 1347 aa12.45□□□□□ -0.42
VCL-204ENST00000472585 SCNN1DP51172 638 aa12.45□□□□□ -0.42
VCL-204ENST00000472585 BRPF1P55201 1214 aaPredicted RBP12.45□□□□□ -0.42
VCL-204ENST00000472585 HTATSF1O43719 755 aaKnown RBP12.44□□□□□ -0.42
VCL-204ENST00000472585 CELF2O95319 508 aaKnown RBP12.44□□□□□ -0.42
VCL-204ENST00000472585 HOXA10P31260 410 aaPredicted RBP12.44□□□□□ -0.42
VCL-204ENST00000472585 SUSD4Q5VX71 490 aa12.44□□□□□ -0.42
VCL-204ENST00000472585 CC2D2BQ6DHV5 1058 aa12.44□□□□□ -0.42
VCL-204ENST00000472585 SAPCD2Q86UD0 394 aa12.44□□□□□ -0.42
VCL-204ENST00000472585 LARGE2Q8N3Y3 721 aa12.44□□□□□ -0.42
VCL-204ENST00000472585 RTF1Q92541 710 aaKnown RBP12.44□□□□□ -0.42
VCL-204ENST00000472585 ERVV-1B6SEH8 477 aa12.43□□□□□ -0.42
VCL-204ENST00000472585 TCERG1O14776 1098 aaKnown RBP12.43□□□□□ -0.42
VCL-204ENST00000472585 GPTP24298 496 aa12.43□□□□□ -0.42
VCL-204ENST00000472585 EIF4A1P60842 406 aaKnown RBP12.43□□□□□ -0.42
VCL-204ENST00000472585 ZNF34Q8IZ26 560 aa12.43□□□□□ -0.42
VCL-204ENST00000472585 HHIPL1Q96JK4 782 aa12.43□□□□□ -0.42
VCL-204ENST00000472585 THUMPD2Q9BTF0 503 aaKnown RBP12.43□□□□□ -0.42
VCL-204ENST00000472585 RRP7AQ9Y3A4 280 aaKnown RBP12.43□□□□□ -0.42
VCL-204ENST00000472585 GRIPAP1Q4V328 841 aa12.42□□□□□ -0.42
VCL-204ENST00000472585 CIAPIN1Q6FI81 312 aa12.42□□□□□ -0.42
VCL-204ENST00000472585 CHRDL2Q6WN34 429 aa12.42□□□□□ -0.42
VCL-204ENST00000472585 LRP10Q7Z4F1 713 aa12.42□□□□□ -0.42
VCL-204ENST00000472585 SPDYE1Q8NFV5 336 aaPredicted RBP12.42□□□□□ -0.42
VCL-204ENST00000472585 CFAP53Q96M91 514 aa12.42□□□□□ -0.42
VCL-204ENST00000472585 ZNF408Q9H9D4 720 aa12.42□□□□□ -0.42
VCL-204ENST00000472585 ADARB2Q9NS39 739 aaKnown RBP12.42□□□□□ -0.42
VCL-204ENST00000472585 NUDCQ9Y266 331 aa12.42□□□□□ -0.42
VCL-204ENST00000472585 MAP3K15Q6ZN16 1313 aa12.41□□□□□ -0.42
VCL-204ENST00000472585 NTSR2O95665 410 aa12.41□□□□□ -0.42
VCL-204ENST00000472585 MYL6BP14649 208 aa12.41□□□□□ -0.42
VCL-204ENST00000472585 SOX10P56693 466 aa12.41□□□□□ -0.42
VCL-204ENST00000472585 NIM1KQ8IY84 436 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms