RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	C11orf95	C9JLR9	678 aa	Predicted RBP	6.66	□□□□□ -1.34
PTCD3-209	ENST00000472044	EFS	O43281	561 aa		6.66	□□□□□ -1.34
PTCD3-209	ENST00000472044	EPB42	P16452	691 aa		6.66	□□□□□ -1.34
PTCD3-209	ENST00000472044	PCSK2	P16519	638 aa		6.66	□□□□□ -1.34
PTCD3-209	ENST00000472044	ITGA6	P23229	1130 aa		6.66	□□□□□ -1.34
PTCD3-209	ENST00000472044	DNM1	Q05193	864 aa	Known RBP	6.66	□□□□□ -1.34
PTCD3-209	ENST00000472044	EHHADH	Q08426	723 aa		6.66	□□□□□ -1.34
PTCD3-209	ENST00000472044	DBN1	Q16643	649 aa		6.66	□□□□□ -1.34
PTCD3-209	ENST00000472044	RIPOR1	Q6ZS17	1223 aa		6.66	□□□□□ -1.34
PTCD3-209	ENST00000472044	GPR152	Q8TDT2	470 aa		6.66	□□□□□ -1.34
PTCD3-209	ENST00000472044	NUDT16	Q96DE0	195 aa	Known RBP	6.66	□□□□□ -1.34
PTCD3-209	ENST00000472044	NUCKS1	Q9H1E3	243 aa	Known RBP	6.66	□□□□□ -1.34
PTCD3-209	ENST00000472044	NDFIP2	Q9NV92	336 aa		6.66	□□□□□ -1.34
PTCD3-209	ENST00000472044	PCDHGC4	Q9Y5F7	938 aa		6.66	□□□□□ -1.34
PTCD3-209	ENST00000472044	TREH	O43280	583 aa		6.65	□□□□□ -1.34
PTCD3-209	ENST00000472044	EGFR	P00533	1210 aa		6.65	□□□□□ -1.34
PTCD3-209	ENST00000472044	GRN	P28799	593 aa	Known RBP	6.65	□□□□□ -1.34
PTCD3-209	ENST00000472044	LAMC2	Q13753	1193 aa		6.65	□□□□□ -1.34
PTCD3-209	ENST00000472044	DSC3	Q14574	896 aa		6.65	□□□□□ -1.34
PTCD3-209	ENST00000472044	XKR5	Q6UX68	686 aa		6.65	□□□□□ -1.34
PTCD3-209	ENST00000472044	CEP63	Q96MT8	703 aa		6.65	□□□□□ -1.34
PTCD3-209	ENST00000472044	BRD7	Q9NPI1	651 aa		6.65	□□□□□ -1.34
PTCD3-209	ENST00000472044	CUEDC1	Q9NWM3	386 aa	Predicted RBP	6.65	□□□□□ -1.34
PTCD3-209	ENST00000472044	RTCB	Q9Y3I0	505 aa	Known RBP	6.65	□□□□□ -1.34
PTCD3-209	ENST00000472044	KCNMB2	Q9Y691	235 aa		6.65	□□□□□ -1.34
PTCD3-209	ENST00000472044	ATXN7	O15265	892 aa	Predicted RBP	6.64	□□□□□ -1.35
PTCD3-209	ENST00000472044	PPFIA3	O75145	1194 aa		6.64	□□□□□ -1.35
PTCD3-209	ENST00000472044	TNP2	Q05952	138 aa		6.64	□□□□□ -1.35
PTCD3-209	ENST00000472044	NANOS1	Q8WY41	292 aa	Known RBP	6.64	□□□□□ -1.35
PTCD3-209	ENST00000472044	ZNF837	Q96EG3	531 aa	Predicted RBP	6.64	□□□□□ -1.35
PTCD3-209	ENST00000472044	GGNBP2	Q9H3C7	697 aa		6.64	□□□□□ -1.35
PTCD3-209	ENST00000472044	FNDC3A	Q9Y2H6	1198 aa	Known RBP	6.64	□□□□□ -1.35
PTCD3-209	ENST00000472044	RBM47	A0AV96	593 aa	Known RBP	6.63	□□□□□ -1.35
PTCD3-209	ENST00000472044	GPR182	O15218	404 aa		6.63	□□□□□ -1.35
PTCD3-209	ENST00000472044	FMR1	Q06787	632 aa	Known RBP eCLIP	6.63	□□□□□ -1.35
PTCD3-209	ENST00000472044	PDE12	Q6L8Q7	609 aa	Known RBP	6.63	□□□□□ -1.35
PTCD3-209	ENST00000472044	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	6.63	□□□□□ -1.35
PTCD3-209	ENST00000472044	POTEC	B2RU33	542 aa		6.62	□□□□□ -1.35
PTCD3-209	ENST00000472044	BNIP3L	O60238	219 aa		6.62	□□□□□ -1.35
PTCD3-209	ENST00000472044	MAPT	P10636	758 aa	Known RBP	6.62	□□□□□ -1.35
PTCD3-209	ENST00000472044	PLCB3	Q01970	1234 aa		6.62	□□□□□ -1.35
PTCD3-209	ENST00000472044	FBXO33	Q7Z6M2	555 aa		6.62	□□□□□ -1.35
PTCD3-209	ENST00000472044	CMTR1	Q8N1G2	835 aa	Known RBP	6.62	□□□□□ -1.35
PTCD3-209	ENST00000472044	TMC1	Q8TDI8	760 aa		6.62	□□□□□ -1.35
PTCD3-209	ENST00000472044	CFHR5	Q9BXR6	569 aa		6.62	□□□□□ -1.35
PTCD3-209	ENST00000472044	EFCC1	Q9HA90	598 aa		6.62	□□□□□ -1.35
PTCD3-209	ENST00000472044	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	6.62	□□□□□ -1.35
PTCD3-209	ENST00000472044	KCNH4	Q9UQ05	1017 aa		6.62	□□□□□ -1.35
PTCD3-209	ENST00000472044	SFSWAP	Q12872	951 aa	Known RBP	6.61	□□□□□ -1.35
PTCD3-209	ENST00000472044	TRIP4	Q15650	581 aa	Predicted RBP	6.61	□□□□□ -1.35
PTCD3-209	ENST00000472044	FAM182B	Q5T319	152 aa		6.61	□□□□□ -1.35
PTCD3-209	ENST00000472044	NPAS3	Q8IXF0	933 aa		6.61	□□□□□ -1.35
PTCD3-209	ENST00000472044	TTC16	Q8NEE8	873 aa		6.61	□□□□□ -1.35
PTCD3-209	ENST00000472044	USP20	Q9Y2K6	914 aa		6.61	□□□□□ -1.35
PTCD3-209	ENST00000472044	UBAP1L	F5GYI3	381 aa		6.6	□□□□□ -1.35
PTCD3-209	ENST00000472044	KHNYN	O15037	678 aa	Known RBP	6.6	□□□□□ -1.35
PTCD3-209	ENST00000472044	NEFL	P07196	543 aa		6.6	□□□□□ -1.35
PTCD3-209	ENST00000472044	C8orf34	Q49A92	452 aa		6.6	□□□□□ -1.35
PTCD3-209	ENST00000472044	BCL2L13	Q9BXK5	485 aa		6.6	□□□□□ -1.35
PTCD3-209	ENST00000472044	NIF3L1	Q9GZT8	377 aa		6.6	□□□□□ -1.35
PTCD3-209	ENST00000472044	MARK1	Q9P0L2	795 aa		6.6	□□□□□ -1.35
PTCD3-209	ENST00000472044	HCN2	Q9UL51	889 aa		6.6	□□□□□ -1.35
PTCD3-209	ENST00000472044	PHF24	Q9UPV7	400 aa		6.6	□□□□□ -1.35
PTCD3-209	ENST00000472044	DCDC2B	A2VCK2	349 aa		6.59	□□□□□ -1.35
PTCD3-209	ENST00000472044	XYLB	O75191	536 aa		6.59	□□□□□ -1.35
PTCD3-209	ENST00000472044	EAPP	Q56P03	285 aa	Predicted RBP	6.59	□□□□□ -1.35
PTCD3-209	ENST00000472044	FOXR1	Q6PIV2	292 aa		6.59	□□□□□ -1.35
PTCD3-209	ENST00000472044	SV2A	Q7L0J3	742 aa		6.59	□□□□□ -1.35
PTCD3-209	ENST00000472044	GTPBP3	Q969Y2	492 aa	Known RBP	6.59	□□□□□ -1.35
PTCD3-209	ENST00000472044	GSX2	Q9BZM3	304 aa		6.59	□□□□□ -1.35
PTCD3-209	ENST00000472044	STRN4	Q9NRL3	753 aa		6.59	□□□□□ -1.35
PTCD3-209	ENST00000472044	NXF1	Q9UBU9	619 aa	Known RBP	6.59	□□□□□ -1.35
PTCD3-209	ENST00000472044		A6NHS1	94 aa		6.58	□□□□□ -1.36
PTCD3-209	ENST00000472044	P4HB	P07237	508 aa	Known RBP	6.58	□□□□□ -1.36
PTCD3-209	ENST00000472044	FGD1	P98174	961 aa		6.58	□□□□□ -1.36
PTCD3-209	ENST00000472044	CCIN	Q13939	588 aa		6.58	□□□□□ -1.36
PTCD3-209	ENST00000472044	NLRP13	Q86W25	1043 aa		6.58	□□□□□ -1.36
PTCD3-209	ENST00000472044	VWA5B2	Q8N398	1253 aa		6.58	□□□□□ -1.36
PTCD3-209	ENST00000472044	ABHD17A	Q96GS6	310 aa		6.58	□□□□□ -1.36
PTCD3-209	ENST00000472044	TRERF1	Q96PN7	1200 aa		6.58	□□□□□ -1.36
PTCD3-209	ENST00000472044	DNAJC25	Q9H1X3	360 aa		6.58	□□□□□ -1.36
PTCD3-209	ENST00000472044	ELP3	Q9H9T3	547 aa		6.58	□□□□□ -1.36
PTCD3-209	ENST00000472044	TNFRSF21	O75509	655 aa		6.57	□□□□□ -1.36
PTCD3-209	ENST00000472044	ZNF16	P17020	682 aa	Predicted RBP	6.57	□□□□□ -1.36
PTCD3-209	ENST00000472044	FGFR3	P22607	806 aa		6.57	□□□□□ -1.36
PTCD3-209	ENST00000472044	ENOX2	Q16206	610 aa	Known RBP	6.57	□□□□□ -1.36
PTCD3-209	ENST00000472044	ZNF326	Q5BKZ1	582 aa	Known RBP	6.57	□□□□□ -1.36
PTCD3-209	ENST00000472044	ZNF438	Q7Z4V0	828 aa		6.57	□□□□□ -1.36
PTCD3-209	ENST00000472044	CDC14C	A4D256	554 aa		6.56	□□□□□ -1.36
PTCD3-209	ENST00000472044	VSIG8	P0DPA2	414 aa		6.56	□□□□□ -1.36
PTCD3-209	ENST00000472044	SNX29	Q8TEQ0	813 aa		6.56	□□□□□ -1.36
PTCD3-209	ENST00000472044	GIPC2	Q8TF65	315 aa		6.56	□□□□□ -1.36
PTCD3-209	ENST00000472044	CSRNP1	Q96S65	589 aa		6.56	□□□□□ -1.36
PTCD3-209	ENST00000472044	ABI2	Q9NYB9	513 aa	Predicted RBP	6.56	□□□□□ -1.36
PTCD3-209	ENST00000472044	TMEM63C	Q9P1W3	806 aa		6.56	□□□□□ -1.36
PTCD3-209	ENST00000472044	EIF1AY	O14602	144 aa	Known RBP	6.55	□□□□□ -1.36
PTCD3-209	ENST00000472044	CPNE3	O75131	537 aa	Known RBP	6.55	□□□□□ -1.36
PTCD3-209	ENST00000472044	MAP3K6	O95382	1288 aa		6.55	□□□□□ -1.36
PTCD3-209	ENST00000472044	TARS	P26639	723 aa	Known RBP	6.55	□□□□□ -1.36
PTCD3-209	ENST00000472044	MAPK8	P45983	427 aa		6.55	□□□□□ -1.36

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