RNA–Protein interactions for RNA: ENST00000470815.1

HERC3-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 3, humanhuman

TSL 4

Gene HERC3, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC3-208ENST00000470815 CLDN10P78369 228 aa6.9□□□□□ -1.3
HERC3-208ENST00000470815 ADGRE1Q14246 886 aa6.9□□□□□ -1.3
HERC3-208ENST00000470815 GRIK4Q16099 956 aa6.9□□□□□ -1.3
HERC3-208ENST00000470815 HIF1AQ16665 826 aa6.9□□□□□ -1.3
HERC3-208ENST00000470815 ARTNQ5T4W7 220 aa6.9□□□□□ -1.3
HERC3-208ENST00000470815 USP17L2Q6R6M4 530 aa6.9□□□□□ -1.3
HERC3-208ENST00000470815 USP17L1Q7RTZ2 530 aa6.9□□□□□ -1.3
HERC3-208ENST00000470815 RAB44Q7Z6P3 723 aaPredicted RBP6.9□□□□□ -1.3
HERC3-208ENST00000470815 STAG2Q8N3U4 1231 aa6.9□□□□□ -1.3
HERC3-208ENST00000470815 LARGE2Q8N3Y3 721 aa6.9□□□□□ -1.3
HERC3-208ENST00000470815 SUSD3Q96L08 255 aa6.9□□□□□ -1.3
HERC3-208ENST00000470815 PPP1R12CQ9BZL4 782 aa6.9□□□□□ -1.3
HERC3-208ENST00000470815 PALM3A6NDB9 673 aaPredicted RBP6.89□□□□□ -1.31
HERC3-208ENST00000470815 SFI1A8K8P3 1242 aa6.89□□□□□ -1.31
HERC3-208ENST00000470815 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.89□□□□□ -1.31
HERC3-208ENST00000470815 PRSS36Q5K4E3 855 aa6.89□□□□□ -1.31
HERC3-208ENST00000470815 SIX5Q8N196 739 aa6.89□□□□□ -1.31
HERC3-208ENST00000470815 ZFP64Q9NPA5 681 aa6.89□□□□□ -1.31
HERC3-208ENST00000470815 MAFBQ9Y5Q3 323 aaPredicted RBP6.89□□□□□ -1.31
HERC3-208ENST00000470815 NRG1Q02297 640 aaPredicted RBP6.88□□□□□ -1.31
HERC3-208ENST00000470815 MBTPS1Q14703 1052 aa6.88□□□□□ -1.31
HERC3-208ENST00000470815 TRAPPC3LQ5T215 181 aa6.88□□□□□ -1.31
HERC3-208ENST00000470815 ZNF280CQ8ND82 737 aa6.88□□□□□ -1.31
HERC3-208ENST00000470815 C1orf115Q9H7X2 142 aa6.88□□□□□ -1.31
HERC3-208ENST00000470815 HCN4Q9Y3Q4 1203 aa6.88□□□□□ -1.31
HERC3-208ENST00000470815 A0A0A0MRY4 1105 aa6.87□□□□□ -1.31
HERC3-208ENST00000470815 SELPP16109 830 aa6.87□□□□□ -1.31
HERC3-208ENST00000470815 RAC1P63000 192 aa6.87□□□□□ -1.31
HERC3-208ENST00000470815 CFAP70Q5T0N1 1121 aa6.87□□□□□ -1.31
HERC3-208ENST00000470815 BTLAQ7Z6A9 289 aa6.87□□□□□ -1.31
HERC3-208ENST00000470815 TXNRD3Q86VQ6 643 aa6.87□□□□□ -1.31
HERC3-208ENST00000470815 OGFOD1Q8N543 542 aa6.87□□□□□ -1.31
HERC3-208ENST00000470815 GAS2L2Q8NHY3 880 aa6.87□□□□□ -1.31
HERC3-208ENST00000470815 BHMTQ93088 406 aa6.87□□□□□ -1.31
HERC3-208ENST00000470815 LENG1Q96BZ8 264 aaPredicted RBP6.87□□□□□ -1.31
HERC3-208ENST00000470815 TFIP11Q9UBB9 837 aaKnown RBP6.87□□□□□ -1.31
HERC3-208ENST00000470815 SERPINA10Q9UK55 444 aa6.87□□□□□ -1.31
HERC3-208ENST00000470815 SLC6A14Q9UN76 642 aa6.87□□□□□ -1.31
HERC3-208ENST00000470815 KRTAP9-6A0A140TA67 174 aa6.86□□□□□ -1.31
HERC3-208ENST00000470815 PPP1R12BO60237 982 aaPredicted RBP6.86□□□□□ -1.31
HERC3-208ENST00000470815 IER5Q5VY09 327 aa6.86□□□□□ -1.31
HERC3-208ENST00000470815 UBE2OQ9C0C9 1292 aaKnown RBP6.86□□□□□ -1.31
HERC3-208ENST00000470815 C21orf2O43822 256 aa6.85□□□□□ -1.31
HERC3-208ENST00000470815 DKK1O94907 266 aa6.85□□□□□ -1.31
HERC3-208ENST00000470815 ILDR2Q71H61 639 aa6.85□□□□□ -1.31
HERC3-208ENST00000470815 ALDH16A1Q8IZ83 802 aa6.85□□□□□ -1.31
HERC3-208ENST00000470815 TSEN2Q8NCE0 465 aaKnown RBP6.85□□□□□ -1.31
HERC3-208ENST00000470815 C2orf49Q9BVC5 232 aaPredicted RBP6.85□□□□□ -1.31
HERC3-208ENST00000470815 JPH1Q9HDC5 661 aaPredicted RBP6.85□□□□□ -1.31
HERC3-208ENST00000470815 ARID3CA6NKF2 412 aa6.84□□□□□ -1.31
HERC3-208ENST00000470815 CCDC97Q96F63 343 aaPredicted RBP6.84□□□□□ -1.31
HERC3-208ENST00000470815 MKRN1Q9UHC7 482 aaKnown RBP6.84□□□□□ -1.31
HERC3-208ENST00000470815 RBM19Q9Y4C8 960 aaKnown RBP6.84□□□□□ -1.31
HERC3-208ENST00000470815 AFF1P51825 1210 aaKnown RBP6.83□□□□□ -1.32
HERC3-208ENST00000470815 SRPK2P78362 688 aaKnown RBP6.83□□□□□ -1.32
HERC3-208ENST00000470815 LRP8Q14114 963 aa6.83□□□□□ -1.32
HERC3-208ENST00000470815 KANK4Q5T7N3 995 aaPredicted RBP6.83□□□□□ -1.32
HERC3-208ENST00000470815 FMR1NBQ8N0W7 255 aaPredicted RBP6.83□□□□□ -1.32
HERC3-208ENST00000470815 GSX2Q9BZM3 304 aa6.83□□□□□ -1.32
HERC3-208ENST00000470815 DNAJB12Q9NXW2 375 aaKnown RBP6.83□□□□□ -1.32
HERC3-208ENST00000470815 ATAD2Q6PL18 1390 aa6.82□□□□□ -1.32
HERC3-208ENST00000470815 TGFBR3LH3BV60 316 aa6.82□□□□□ -1.32
HERC3-208ENST00000470815 TBC1D8BQ0IIM8 1120 aa6.82□□□□□ -1.32
HERC3-208ENST00000470815 PCSK7Q16549 785 aa6.82□□□□□ -1.32
HERC3-208ENST00000470815 RTN1Q16799 776 aa6.82□□□□□ -1.32
HERC3-208ENST00000470815 PSAPL1Q6NUJ1 521 aa6.82□□□□□ -1.32
HERC3-208ENST00000470815 NBPF11Q86T75 865 aa6.82□□□□□ -1.32
HERC3-208ENST00000470815 CCDC82Q8N4S0 544 aa6.82□□□□□ -1.32
HERC3-208ENST00000470815 DTWD1Q8N5C7 304 aa6.82□□□□□ -1.32
HERC3-208ENST00000470815 ZNF594Q96JF6 807 aaPredicted RBP6.82□□□□□ -1.32
HERC3-208ENST00000470815 SSBP4Q9BWG4 385 aaPredicted RBP6.82□□□□□ -1.32
HERC3-208ENST00000470815 NAGPAQ9UK23 515 aa6.82□□□□□ -1.32
HERC3-208ENST00000470815 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.82□□□□□ -1.32
HERC3-208ENST00000470815 LMOD1P29536 600 aaPredicted RBP6.81□□□□□ -1.32
HERC3-208ENST00000470815 CCINQ13939 588 aa6.81□□□□□ -1.32
HERC3-208ENST00000470815 SHISA2Q6UWI4 295 aa6.81□□□□□ -1.32
HERC3-208ENST00000470815 NUDT8Q8WV74 236 aa6.81□□□□□ -1.32
HERC3-208ENST00000470815 PNMA5Q96PV4 448 aa6.81□□□□□ -1.32
HERC3-208ENST00000470815 FAM196BA6NMK8 535 aa6.8□□□□□ -1.32
HERC3-208ENST00000470815 RGS9O75916 674 aaPredicted RBP6.8□□□□□ -1.32
HERC3-208ENST00000470815 MAP3K6O95382 1288 aa6.8□□□□□ -1.32
HERC3-208ENST00000470815 EPB42P16452 691 aa6.8□□□□□ -1.32
HERC3-208ENST00000470815 SEC13P55735 322 aa6.8□□□□□ -1.32
HERC3-208ENST00000470815 SCG3Q8WXD2 468 aaKnown RBP6.8□□□□□ -1.32
HERC3-208ENST00000470815 TP53INP1Q96A56 240 aa6.8□□□□□ -1.32
HERC3-208ENST00000470815 IGFLR1Q9H665 355 aa6.8□□□□□ -1.32
HERC3-208ENST00000470815 C11orf16Q9NQ32 467 aa6.8□□□□□ -1.32
HERC3-208ENST00000470815 FRRS1LQ9P0K9 344 aa6.8□□□□□ -1.32
HERC3-208ENST00000470815 DMGDHQ9UI17 866 aaKnown RBP6.8□□□□□ -1.32
HERC3-208ENST00000470815 USP21Q9UK80 565 aa6.8□□□□□ -1.32
HERC3-208ENST00000470815 NFKB1P19838 968 aa6.79□□□□□ -1.32
HERC3-208ENST00000470815 VRTNQ9H8Y1 702 aa6.79□□□□□ -1.32
HERC3-208ENST00000470815 SUPT5HO00267 1087 aaKnown RBP6.78□□□□□ -1.32
HERC3-208ENST00000470815 MSL1Q68DK7 614 aa6.78□□□□□ -1.32
HERC3-208ENST00000470815 FBXO11Q86XK2 927 aa6.78□□□□□ -1.32
HERC3-208ENST00000470815 DMRTC2Q8IXT2 367 aaPredicted RBP6.78□□□□□ -1.32
HERC3-208ENST00000470815 TTC9Q92623 222 aa6.78□□□□□ -1.32
HERC3-208ENST00000470815 PBXIP1Q96AQ6 731 aa6.78□□□□□ -1.32
HERC3-208ENST00000470815 NGLY1Q96IV0 654 aa6.78□□□□□ -1.32
HERC3-208ENST00000470815 PPP1R15AO75807 674 aaPredicted RBP6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms