RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 SLURP2P0DP57 97 aa8.03□□□□□ -1.12
SYNE1-219ENST00000469439 IRF5Q13568 498 aa8.03□□□□□ -1.12
SYNE1-219ENST00000469439 CCDC85AQ96PX6 553 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-219ENST00000469439 PUS7Q96PZ0 661 aaKnown RBP8.03□□□□□ -1.12
SYNE1-219ENST00000469439 ARHGEF10LQ9HCE6 1279 aa8.03□□□□□ -1.12
SYNE1-219ENST00000469439 CEP126Q9P2H0 1117 aa8.03□□□□□ -1.12
SYNE1-219ENST00000469439 TMEM131LA2VDJ0 1609 aa8.03□□□□□ -1.12
SYNE1-219ENST00000469439 SLIT1O75093 1534 aa8.03□□□□□ -1.12
SYNE1-219ENST00000469439 PIK3C2GO75747 1445 aa8.03□□□□□ -1.12
SYNE1-219ENST00000469439 ADGRF5Q8IZF2 1346 aa8.03□□□□□ -1.12
SYNE1-219ENST00000469439 C3P01024 1663 aa8.02□□□□□ -1.13
SYNE1-219ENST00000469439 RIMS1Q86UR5 1692 aaKnown RBP8.02□□□□□ -1.13
SYNE1-219ENST00000469439 SCAF11Q99590 1463 aaKnown RBP8.02□□□□□ -1.13
SYNE1-219ENST00000469439 USP47Q96K76 1375 aa8.02□□□□□ -1.13
SYNE1-219ENST00000469439 NBPF8Q3BBV2 869 aa8.02□□□□□ -1.13
SYNE1-219ENST00000469439 ZNF385CQ66K41 422 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-219ENST00000469439 ZNF837Q96EG3 531 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-219ENST00000469439 NLRP3Q96P20 1036 aa8.02□□□□□ -1.13
SYNE1-219ENST00000469439 GRIP2Q9C0E4 1043 aa8.02□□□□□ -1.13
SYNE1-219ENST00000469439 POGKQ9P215 609 aa8.02□□□□□ -1.13
SYNE1-219ENST00000469439 LAMC1P11047 1609 aa8.02□□□□□ -1.13
SYNE1-219ENST00000469439 GAS6Q14393 721 aa8.01□□□□□ -1.13
SYNE1-219ENST00000469439 SLC27A3Q5K4L6 730 aa8.01□□□□□ -1.13
SYNE1-219ENST00000469439 CFAP70Q5T0N1 1121 aa8.01□□□□□ -1.13
SYNE1-219ENST00000469439 CDCA7Q9BWT1 371 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-219ENST00000469439 PRM3Q9NNZ6 103 aa8.01□□□□□ -1.13
SYNE1-219ENST00000469439 CEP170BQ9Y4F5 1589 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-219ENST00000469439 SETBP1Q9Y6X0 1596 aa8.01□□□□□ -1.13
SYNE1-219ENST00000469439 KIAA1210Q9ULL0 1709 aa8□□□□□ -1.13
SYNE1-219ENST00000469439 ARHGAP23Q9P227 1491 aa8□□□□□ -1.13
SYNE1-219ENST00000469439 ABCC11Q96J66 1382 aa8□□□□□ -1.13
SYNE1-219ENST00000469439 SPATA31C2B4DYI2 1134 aa8□□□□□ -1.13
SYNE1-219ENST00000469439 GNRH1P01148 92 aa8□□□□□ -1.13
SYNE1-219ENST00000469439 TRIM22Q8IYM9 498 aa8□□□□□ -1.13
SYNE1-219ENST00000469439 GMCL1Q96IK5 515 aa8□□□□□ -1.13
SYNE1-219ENST00000469439 RAB6BQ9NRW1 208 aa8□□□□□ -1.13
SYNE1-219ENST00000469439 DYRK1BQ9Y463 629 aa8□□□□□ -1.13
SYNE1-219ENST00000469439 SIGLEC1Q9BZZ2 1709 aa8□□□□□ -1.13
SYNE1-219ENST00000469439 EVC2Q86UK5 1308 aa8□□□□□ -1.13
SYNE1-219ENST00000469439 CENPJQ9HC77 1338 aaPredicted RBP8□□□□□ -1.13
SYNE1-219ENST00000469439 SBNO2Q9Y2G9 1366 aa7.99□□□□□ -1.13
SYNE1-219ENST00000469439 NEXMIFQ5QGS0 1516 aa7.99□□□□□ -1.13
SYNE1-219ENST00000469439 IL2RAP01589 272 aa7.99□□□□□ -1.13
SYNE1-219ENST00000469439 HSPA5P11021 654 aaKnown RBP7.99□□□□□ -1.13
SYNE1-219ENST00000469439 POU4F2Q12837 409 aa7.99□□□□□ -1.13
SYNE1-219ENST00000469439 DIP2AQ14689 1571 aa7.99□□□□□ -1.13
SYNE1-219ENST00000469439 NBPF10Q6P3W6 841 aaKnown RBP7.99□□□□□ -1.13
SYNE1-219ENST00000469439 PHTF2Q8N3S3 785 aa7.99□□□□□ -1.13
SYNE1-219ENST00000469439 SVOPQ8N4V2 548 aa7.99□□□□□ -1.13
SYNE1-219ENST00000469439 NBPF15Q8N660 670 aa7.99□□□□□ -1.13
SYNE1-219ENST00000469439 WHAMMQ8TF30 809 aa7.99□□□□□ -1.13
SYNE1-219ENST00000469439 LRPPRCP42704 1394 aaKnown RBP7.98□□□□□ -1.13
SYNE1-219ENST00000469439 CFAP65Q6ZU64 1925 aaKnown RBP7.98□□□□□ -1.13
SYNE1-219ENST00000469439 ST20-MTHFSA0A0A6YYL1 179 aa7.98□□□□□ -1.13
SYNE1-219ENST00000469439 MYCP01106 439 aaPredicted RBP7.98□□□□□ -1.13
SYNE1-219ENST00000469439 GSK3AP49840 483 aa7.98□□□□□ -1.13
SYNE1-219ENST00000469439 KCNMA1Q12791 1236 aa7.98□□□□□ -1.13
SYNE1-219ENST00000469439 WDR44Q5JSH3 913 aa7.98□□□□□ -1.13
SYNE1-219ENST00000469439 ESYT1Q9BSJ8 1104 aa7.98□□□□□ -1.13
SYNE1-219ENST00000469439 ADAMTS8Q9UP79 889 aa7.98□□□□□ -1.13
SYNE1-219ENST00000469439 HRH3Q9Y5N1 445 aa7.98□□□□□ -1.13
SYNE1-219ENST00000469439 FAM135BQ49AJ0 1406 aa7.97□□□□□ -1.13
SYNE1-219ENST00000469439 MYO3AQ8NEV4 1616 aa7.97□□□□□ -1.13
SYNE1-219ENST00000469439 WASLO00401 505 aaPredicted RBP7.97□□□□□ -1.13
SYNE1-219ENST00000469439 ADAMTS2O95450 1211 aa7.97□□□□□ -1.13
SYNE1-219ENST00000469439 LTKP29376 864 aa7.97□□□□□ -1.13
SYNE1-219ENST00000469439 SRSF11Q05519 484 aaKnown RBP7.97□□□□□ -1.13
SYNE1-219ENST00000469439 VAC14Q08AM6 782 aa7.97□□□□□ -1.13
SYNE1-219ENST00000469439 DBN1Q16643 649 aa7.97□□□□□ -1.13
SYNE1-219ENST00000469439 NBPF1Q3BBV0 1214 aa7.97□□□□□ -1.13
SYNE1-219ENST00000469439 CNKSR1Q969H4 720 aa7.97□□□□□ -1.13
SYNE1-219ENST00000469439 GDPD2Q9HCC8 539 aa7.97□□□□□ -1.13
SYNE1-219ENST00000469439 DOLKQ9UPQ8 538 aa7.97□□□□□ -1.13
SYNE1-219ENST00000469439 TRAK1Q9UPV9 953 aa7.97□□□□□ -1.13
SYNE1-219ENST00000469439 MED14O60244 1454 aa7.97□□□□□ -1.13
SYNE1-219ENST00000469439 ZNF142P52746 1687 aaPredicted RBP7.97□□□□□ -1.13
SYNE1-219ENST00000469439 NINLQ9Y2I6 1382 aa7.97□□□□□ -1.13
SYNE1-219ENST00000469439 NPHP4O75161 1426 aaPredicted RBP7.96□□□□□ -1.13
SYNE1-219ENST00000469439 YTHDC2Q9H6S0 1430 aaKnown RBP7.96□□□□□ -1.13
SYNE1-219ENST00000469439 UBR1Q8IWV7 1749 aa7.96□□□□□ -1.14
SYNE1-219ENST00000469439 ARHGEF15O94989 841 aa7.96□□□□□ -1.14
SYNE1-219ENST00000469439 KCNA6P17658 529 aa7.96□□□□□ -1.14
SYNE1-219ENST00000469439 MCM6Q14566 821 aa7.96□□□□□ -1.14
SYNE1-219ENST00000469439 RIPOR1Q6ZS17 1223 aa7.96□□□□□ -1.14
SYNE1-219ENST00000469439 TAS1R3Q7RTX0 852 aa7.96□□□□□ -1.14
SYNE1-219ENST00000469439 PPLO60437 1756 aa7.96□□□□□ -1.14
SYNE1-219ENST00000469439 CENPCQ03188 943 aa7.95□□□□□ -1.14
SYNE1-219ENST00000469439 TSGA10IPQ3SY00 556 aa7.95□□□□□ -1.14
SYNE1-219ENST00000469439 SLFNL1Q499Z3 407 aa7.95□□□□□ -1.14
SYNE1-219ENST00000469439 RNF135Q8IUD6 432 aa7.95□□□□□ -1.14
SYNE1-219ENST00000469439 GAS2L1Q99501 681 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-219ENST00000469439 FHDC1Q9C0D6 1143 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-219ENST00000469439 STK26Q9P289 416 aa7.95□□□□□ -1.14
SYNE1-219ENST00000469439 AMOTL2Q9Y2J4 779 aa7.95□□□□□ -1.14
SYNE1-219ENST00000469439 WASHC2AQ641Q2 1341 aa7.95□□□□□ -1.14
SYNE1-219ENST00000469439 ATAD2Q6PL18 1390 aa7.95□□□□□ -1.14
SYNE1-219ENST00000469439 NCOA3Q9Y6Q9 1424 aa7.95□□□□□ -1.14
SYNE1-219ENST00000469439 DLC1Q96QB1 1528 aa7.94□□□□□ -1.14
SYNE1-219ENST00000469439 TRPM1Q7Z4N2 1603 aa7.94□□□□□ -1.14
SYNE1-219ENST00000469439 ALKQ9UM73 1620 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms