RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 F6X3S4 739 aa15.22■□□□□ 0.03
VPS13D-204ENST00000469054 CCDC191Q8NCU4 936 aa15.22■□□□□ 0.03
VPS13D-204ENST00000469054 TRMT112Q9UI30 125 aaKnown RBP15.22■□□□□ 0.03
VPS13D-204ENST00000469054 A0A0G2JLW4 131 aa15.21■□□□□ 0.03
VPS13D-204ENST00000469054 IGKV5-2P06315 115 aa15.21■□□□□ 0.03
VPS13D-204ENST00000469054 PDE6BP35913 854 aa15.21■□□□□ 0.03
VPS13D-204ENST00000469054 ERFEQ4G0M1 354 aa15.21■□□□□ 0.03
VPS13D-204ENST00000469054 RNF123Q5XPI4 1314 aa15.2■□□□□ 0.02
VPS13D-204ENST00000469054 DPEP1P16444 411 aa15.2■□□□□ 0.02
VPS13D-204ENST00000469054 CWC25Q9NXE8 425 aaPredicted RBP15.2■□□□□ 0.02
VPS13D-204ENST00000469054 NOB1Q9ULX3 412 aaKnown RBP15.2■□□□□ 0.02
VPS13D-204ENST00000469054 PDZRN3Q9UPQ7 1066 aa15.2■□□□□ 0.02
VPS13D-204ENST00000469054 SH3TC1Q8TE82 1336 aa15.19■□□□□ 0.02
VPS13D-204ENST00000469054 KLRG2A4D1S0 409 aaPredicted RBP15.19■□□□□ 0.02
VPS13D-204ENST00000469054 NEURL1BA8MQ27 555 aa15.19■□□□□ 0.02
VPS13D-204ENST00000469054 BCAR3O75815 825 aa15.19■□□□□ 0.02
VPS13D-204ENST00000469054 KCNA3P22001 575 aa15.19■□□□□ 0.02
VPS13D-204ENST00000469054 CHRNA5P30532 468 aa15.19■□□□□ 0.02
VPS13D-204ENST00000469054 CWF19L2Q2TBE0 894 aaKnown RBP15.19■□□□□ 0.02
VPS13D-204ENST00000469054 SLC10A5Q5PT55 438 aa15.19■□□□□ 0.02
VPS13D-204ENST00000469054 BEND3Q5T5X7 828 aa15.19■□□□□ 0.02
VPS13D-204ENST00000469054 ZBTB38Q8NAP3 1195 aaPredicted RBP15.19■□□□□ 0.02
VPS13D-204ENST00000469054 LINS1Q8NG48 757 aa15.19■□□□□ 0.02
VPS13D-204ENST00000469054 NRXN2Q9P2S2 1712 aa15.19■□□□□ 0.02
VPS13D-204ENST00000469054 NUP98P52948 1817 aa15.19■□□□□ 0.02
VPS13D-204ENST00000469054 PXDNLA1KZ92 1463 aa15.19■□□□□ 0.02
VPS13D-204ENST00000469054 H0YIN7 160 aa15.18■□□□□ 0.02
VPS13D-204ENST00000469054 SLC4A10Q6U841 1118 aa15.18■□□□□ 0.02
VPS13D-204ENST00000469054 C2CD5Q86YS7 1000 aa15.18■□□□□ 0.02
VPS13D-204ENST00000469054 SYNE4Q8N205 404 aa15.18■□□□□ 0.02
VPS13D-204ENST00000469054 FAM89AQ96GI7 184 aa15.18■□□□□ 0.02
VPS13D-204ENST00000469054 ABCC12Q96J65 1359 aa15.18■□□□□ 0.02
VPS13D-204ENST00000469054 KIF16BQ96L93 1317 aa15.17■□□□□ 0.02
VPS13D-204ENST00000469054 PCCAP05165 728 aaPredicted RBP15.17■□□□□ 0.02
VPS13D-204ENST00000469054 ARHGAP45Q92619 1136 aa15.17■□□□□ 0.02
VPS13D-204ENST00000469054 IPO8O15397 1037 aaKnown RBP15.16■□□□□ 0.02
VPS13D-204ENST00000469054 SRGNP10124 158 aa15.16■□□□□ 0.02
VPS13D-204ENST00000469054 HCLS1P14317 486 aaPredicted RBP15.16■□□□□ 0.02
VPS13D-204ENST00000469054 GCKRQ14397 625 aa15.16■□□□□ 0.02
VPS13D-204ENST00000469054 RTL5Q5HYW3 569 aaPredicted RBP15.16■□□□□ 0.02
VPS13D-204ENST00000469054 NLRP3Q96P20 1036 aa15.16■□□□□ 0.02
VPS13D-204ENST00000469054 API5Q9BZZ5 524 aaKnown RBP15.16■□□□□ 0.02
VPS13D-204ENST00000469054 PIM2Q9P1W9 311 aa15.16■□□□□ 0.02
VPS13D-204ENST00000469054 AFDNP55196 1824 aaKnown RBP15.15■□□□□ 0.02
VPS13D-204ENST00000469054 CACNA1FO60840 1977 aa15.15■□□□□ 0.02
VPS13D-204ENST00000469054 IRS4O14654 1257 aaPredicted RBP15.15■□□□□ 0.02
VPS13D-204ENST00000469054 ALDH1L1O75891 902 aa15.15■□□□□ 0.02
VPS13D-204ENST00000469054 JARID2Q92833 1246 aaPredicted RBP15.15■□□□□ 0.02
VPS13D-204ENST00000469054 ZNF622Q969S3 477 aaKnown RBP eCLIP15.15■□□□□ 0.02
VPS13D-204ENST00000469054 MASTLQ96GX5 879 aa15.15■□□□□ 0.02
VPS13D-204ENST00000469054 SRCIN1Q9C0H9 1055 aa15.15■□□□□ 0.02
VPS13D-204ENST00000469054 WWC3Q9ULE0 1092 aa15.15■□□□□ 0.02
VPS13D-204ENST00000469054 RIC1Q4ADV7 1423 aa15.15■□□□□ 0.02
VPS13D-204ENST00000469054 ARFGEF2Q9Y6D5 1785 aa15.14■□□□□ 0.01
VPS13D-204ENST00000469054 H7C1W4 665 aa15.14■□□□□ 0.01
VPS13D-204ENST00000469054 HSP90B1P14625 803 aaKnown RBP15.14■□□□□ 0.01
VPS13D-204ENST00000469054 GPR162Q16538 588 aa15.14■□□□□ 0.01
VPS13D-204ENST00000469054 CRY2Q49AN0 593 aa15.14■□□□□ 0.01
VPS13D-204ENST00000469054 STYK1Q6J9G0 422 aa15.14■□□□□ 0.01
VPS13D-204ENST00000469054 C3orf67Q6ZVT6 689 aa15.14■□□□□ 0.01
VPS13D-204ENST00000469054 FRAT1Q92837 279 aaPredicted RBP15.14■□□□□ 0.01
VPS13D-204ENST00000469054 RCAN3Q9UKA8 241 aa15.14■□□□□ 0.01
VPS13D-204ENST00000469054 NPR1P16066 1061 aa15.13■□□□□ 0.01
VPS13D-204ENST00000469054 DALRD3Q5D0E6 543 aaKnown RBP15.13■□□□□ 0.01
VPS13D-204ENST00000469054 ATF7IPQ6VMQ6 1270 aa15.13■□□□□ 0.01
VPS13D-204ENST00000469054 UBE3BQ7Z3V4 1068 aa15.13■□□□□ 0.01
VPS13D-204ENST00000469054 PELP1Q8IZL8 1130 aaKnown RBP15.13■□□□□ 0.01
VPS13D-204ENST00000469054 TTLL6Q8N841 843 aa15.13■□□□□ 0.01
VPS13D-204ENST00000469054 CNKSR1Q969H4 720 aa15.13■□□□□ 0.01
VPS13D-204ENST00000469054 BCS1LQ9Y276 419 aa15.13■□□□□ 0.01
VPS13D-204ENST00000469054 CDHR2Q9BYE9 1310 aa15.13■□□□□ 0.01
VPS13D-204ENST00000469054 KIF13BQ9NQT8 1826 aa15.13■□□□□ 0.01
VPS13D-204ENST00000469054 ANKRD36CQ5JPF3 1778 aa15.12■□□□□ 0.01
VPS13D-204ENST00000469054 TRIM27P14373 513 aa15.12■□□□□ 0.01
VPS13D-204ENST00000469054 ZKSCAN2Q63HK3 967 aa15.12■□□□□ 0.01
VPS13D-204ENST00000469054 RNF39Q9H2S5 420 aa15.12■□□□□ 0.01
VPS13D-204ENST00000469054 GRM8O00222 908 aa15.11■□□□□ 0.01
VPS13D-204ENST00000469054 PDE8AO60658 829 aa15.11■□□□□ 0.01
VPS13D-204ENST00000469054 YBX3P16989 372 aaKnown RBP eCLIP15.11■□□□□ 0.01
VPS13D-204ENST00000469054 ALDH1B1P30837 517 aa15.11■□□□□ 0.01
VPS13D-204ENST00000469054 HOXA10P31260 410 aaPredicted RBP15.11■□□□□ 0.01
VPS13D-204ENST00000469054 CCT4P50991 539 aaKnown RBP15.11■□□□□ 0.01
VPS13D-204ENST00000469054 CASP7P55210 303 aa15.11■□□□□ 0.01
VPS13D-204ENST00000469054 SF3B3Q15393 1217 aaKnown RBP15.11■□□□□ 0.01
VPS13D-204ENST00000469054 RPGRQ92834 1020 aaKnown RBP15.11■□□□□ 0.01
VPS13D-204ENST00000469054 RBM17Q96I25 401 aaKnown RBP15.11■□□□□ 0.01
VPS13D-204ENST00000469054 C9orf78Q9NZ63 289 aaPredicted RBP15.11■□□□□ 0.01
VPS13D-204ENST00000469054 GRIN3BO60391 1043 aa15.1■□□□□ 0.01
VPS13D-204ENST00000469054 CRAMP1Q96RY5 1269 aa15.1■□□□□ 0.01
VPS13D-204ENST00000469054 PLA2G12BQ9BX93 195 aa15.1■□□□□ 0.01
VPS13D-204ENST00000469054 CLUAP1Q96AJ1 413 aa15.09■□□□□ 0.01
VPS13D-204ENST00000469054 TNNQ9UQP3 1299 aa15.09■□□□□ 0.01
VPS13D-204ENST00000469054 ABCC4O15439 1325 aa15.09■□□□□ 0.01
VPS13D-204ENST00000469054 KIAA1551Q9HCM1 1747 aa15.09■□□□□ 0.01
VPS13D-204ENST00000469054 ANKRD31Q8N7Z5 1873 aa15.08■□□□□ 0.01
VPS13D-204ENST00000469054 NBPF7P0C2Y1 421 aaPredicted RBP15.08■□□□□ 0
VPS13D-204ENST00000469054 CTSWP56202 376 aa15.08■□□□□ 0
VPS13D-204ENST00000469054 INTS3Q68E01 1043 aaKnown RBP15.08■□□□□ 0
VPS13D-204ENST00000469054 PRPF40BQ6NWY9 871 aaKnown RBP15.08■□□□□ 0
VPS13D-204ENST00000469054 DDX46Q7L014 1031 aaKnown RBP15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms