RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 RBM17Q96I25 401 aaKnown RBP24.57■■□□□ 1.52
SF3A1-205ENST00000463818 FER1L6Q2WGJ9 1857 aa24.57■■□□□ 1.52
SF3A1-205ENST00000463818 HSP90AB3PQ58FF7 597 aa24.56■■□□□ 1.52
SF3A1-205ENST00000463818 SLC10A5Q5PT55 438 aa24.56■■□□□ 1.52
SF3A1-205ENST00000463818 HDGFL1Q5TGJ6 251 aa24.56■■□□□ 1.52
SF3A1-205ENST00000463818 C3orf67Q6ZVT6 689 aa24.56■■□□□ 1.52
SF3A1-205ENST00000463818 NLRP3Q96P20 1036 aa24.56■■□□□ 1.52
SF3A1-205ENST00000463818 CHPF2Q9P2E5 772 aa24.56■■□□□ 1.52
SF3A1-205ENST00000463818 HOXB7P09629 217 aa24.55■■□□□ 1.52
SF3A1-205ENST00000463818 HTRA3P83110 453 aa24.55■■□□□ 1.52
SF3A1-205ENST00000463818 TCIRG1Q13488 830 aa24.55■■□□□ 1.52
SF3A1-205ENST00000463818 CRAMP1Q96RY5 1269 aa24.55■■□□□ 1.52
SF3A1-205ENST00000463818 NUP98P52948 1817 aa24.55■■□□□ 1.52
SF3A1-205ENST00000463818 CCDC88AQ3V6T2 1871 aa24.55■■□□□ 1.52
SF3A1-205ENST00000463818 DUSP27Q5VZP5 1158 aa24.54■■□□□ 1.52
SF3A1-205ENST00000463818 MBIPQ9NS73 344 aa24.54■■□□□ 1.52
SF3A1-205ENST00000463818 ZNF853P0CG23 659 aa24.53■■□□□ 1.52
SF3A1-205ENST00000463818 CC2D2BQ6DHV5 1058 aa24.53■■□□□ 1.52
SF3A1-205ENST00000463818 NLRP10Q86W26 655 aa24.53■■□□□ 1.52
SF3A1-205ENST00000463818 TNRC6CQ9HCJ0 1690 aaKnown RBP24.53■■□□□ 1.52
SF3A1-205ENST00000463818 RIC1Q4ADV7 1423 aa24.52■■□□□ 1.52
SF3A1-205ENST00000463818 TCERG1O14776 1098 aaKnown RBP24.52■■□□□ 1.52
SF3A1-205ENST00000463818 DBF4Q9UBU7 674 aaPredicted RBP24.52■■□□□ 1.52
SF3A1-205ENST00000463818 IARSP41252 1262 aaKnown RBP24.51■■□□□ 1.51
SF3A1-205ENST00000463818 PSMD1Q99460 953 aa24.51■■□□□ 1.51
SF3A1-205ENST00000463818 GNAI1P63096 354 aa24.5■■□□□ 1.51
SF3A1-205ENST00000463818 CCDC184Q52MB2 194 aa24.5■■□□□ 1.51
SF3A1-205ENST00000463818 ANKRD13DQ6ZTN6 518 aa24.5■■□□□ 1.51
SF3A1-205ENST00000463818 IFT57Q9NWB7 429 aa24.5■■□□□ 1.51
SF3A1-205ENST00000463818 TRMT112Q9UI30 125 aaKnown RBP24.5■■□□□ 1.51
SF3A1-205ENST00000463818 TIAM2Q8IVF5 1701 aa24.49■■□□□ 1.51
SF3A1-205ENST00000463818 ARFGEF2Q9Y6D5 1785 aa24.49■■□□□ 1.51
SF3A1-205ENST00000463818 PPEF1O14829 653 aaPredicted RBP24.49■■□□□ 1.51
SF3A1-205ENST00000463818 HCLS1P14317 486 aaPredicted RBP24.49■■□□□ 1.51
SF3A1-205ENST00000463818 CALD1Q05682 793 aaKnown RBP24.49■■□□□ 1.51
SF3A1-205ENST00000463818 PLBD2Q8NHP8 589 aa24.49■■□□□ 1.51
SF3A1-205ENST00000463818 HYPKQ9NX55 129 aa24.49■■□□□ 1.51
SF3A1-205ENST00000463818 CACNA1SQ13698 1873 aa24.49■■□□□ 1.51
SF3A1-205ENST00000463818 GRIPAP1Q4V328 841 aa24.48■■□□□ 1.51
SF3A1-205ENST00000463818 RNF123Q5XPI4 1314 aa24.48■■□□□ 1.51
SF3A1-205ENST00000463818 WDR90Q96KV7 1748 aa24.47■■□□□ 1.51
SF3A1-205ENST00000463818 ZNF541Q9H0D2 1346 aa24.47■■□□□ 1.51
SF3A1-205ENST00000463818 FZD9O00144 591 aa24.47■■□□□ 1.51
SF3A1-205ENST00000463818 ELL2O00472 640 aaPredicted RBP24.47■■□□□ 1.51
SF3A1-205ENST00000463818 SLC51AQ86UW1 340 aa24.47■■□□□ 1.51
SF3A1-205ENST00000463818 ZNF428Q96B54 188 aa24.47■■□□□ 1.51
SF3A1-205ENST00000463818 L3MBTL3Q96JM7 780 aaPredicted RBP24.47■■□□□ 1.51
SF3A1-205ENST00000463818 DICER1Q9UPY3 1922 aaKnown RBP24.47■■□□□ 1.51
SF3A1-205ENST00000463818 SH3TC1Q8TE82 1336 aa24.46■■□□□ 1.51
SF3A1-205ENST00000463818 IQCA1LA6NCM1 817 aa24.46■■□□□ 1.51
SF3A1-205ENST00000463818 JDP2Q8WYK2 163 aa24.46■■□□□ 1.51
SF3A1-205ENST00000463818 KLRG1Q96E93 195 aa24.46■■□□□ 1.51
SF3A1-205ENST00000463818 SNED1Q8TER0 1413 aa24.45■■□□□ 1.51
SF3A1-205ENST00000463818 POTEIP0CG38 1075 aa24.45■■□□□ 1.5
SF3A1-205ENST00000463818 POTEJP0CG39 1038 aa24.45■■□□□ 1.5
SF3A1-205ENST00000463818 CHADLQ6NUI6 762 aa24.45■■□□□ 1.5
SF3A1-205ENST00000463818 TMX4Q9H1E5 349 aaPredicted RBP24.45■■□□□ 1.5
SF3A1-205ENST00000463818 ABCC4O15439 1325 aa24.44■■□□□ 1.5
SF3A1-205ENST00000463818 ATP5J2-PTCD1G3V325 749 aa24.44■■□□□ 1.5
SF3A1-205ENST00000463818 BBOX1O75936 387 aa24.44■■□□□ 1.5
SF3A1-205ENST00000463818 ISCA1Q9BUE6 129 aa24.44■■□□□ 1.5
SF3A1-205ENST00000463818 TAF1DQ9H5J8 278 aaPredicted RBP24.44■■□□□ 1.5
SF3A1-205ENST00000463818 ATP6V0A2Q9Y487 856 aa24.44■■□□□ 1.5
SF3A1-205ENST00000463818 LARGE2Q8N3Y3 721 aa24.43■■□□□ 1.5
SF3A1-205ENST00000463818 ZNF316A6NFI3 1004 aaPredicted RBP24.42■■□□□ 1.5
SF3A1-205ENST00000463818 DDX46Q7L014 1031 aaKnown RBP24.42■■□□□ 1.5
SF3A1-205ENST00000463818 C8orf58Q8NAV2 365 aa24.42■■□□□ 1.5
SF3A1-205ENST00000463818 HACL1Q9UJ83 578 aa24.42■■□□□ 1.5
SF3A1-205ENST00000463818 EIF6P56537 245 aaKnown RBP24.41■■□□□ 1.5
SF3A1-205ENST00000463818 SP8Q8IXZ3 490 aa24.41■■□□□ 1.5
SF3A1-205ENST00000463818 FAM89AQ96GI7 184 aa24.41■■□□□ 1.5
SF3A1-205ENST00000463818 PHAXQ9H814 394 aaKnown RBP24.41■■□□□ 1.5
SF3A1-205ENST00000463818 TRIM28Q13263 835 aaKnown RBP24.4■■□□□ 1.5
SF3A1-205ENST00000463818 RIC3Q7Z5B4 369 aa24.4■■□□□ 1.5
SF3A1-205ENST00000463818 GPC2Q8N158 579 aa24.4■■□□□ 1.5
SF3A1-205ENST00000463818 LDHDQ86WU2 507 aa24.39■■□□□ 1.49
SF3A1-205ENST00000463818 GJA3Q9Y6H8 435 aa24.39■■□□□ 1.49
SF3A1-205ENST00000463818 EPHX2P34913 555 aa24.38■■□□□ 1.49
SF3A1-205ENST00000463818 GOLGA2Q08379 1002 aa24.38■■□□□ 1.49
SF3A1-205ENST00000463818 GRAPQ13588 217 aa24.38■■□□□ 1.49
SF3A1-205ENST00000463818 EAPPQ56P03 285 aaPredicted RBP24.38■■□□□ 1.49
SF3A1-205ENST00000463818 JMYQ8N9B5 988 aa24.38■■□□□ 1.49
SF3A1-205ENST00000463818 GRAPLQ8TC17 118 aaPredicted RBP24.38■■□□□ 1.49
SF3A1-205ENST00000463818 PPIP5K2O43314 1243 aa24.37■■□□□ 1.49
SF3A1-205ENST00000463818 RTL5Q5HYW3 569 aaPredicted RBP24.37■■□□□ 1.49
SF3A1-205ENST00000463818 NIM1KQ8IY84 436 aa24.37■■□□□ 1.49
SF3A1-205ENST00000463818 RTFDC1Q9BY42 306 aaPredicted RBP24.37■■□□□ 1.49
SF3A1-205ENST00000463818 VPS33BQ9H267 617 aa24.37■■□□□ 1.49
SF3A1-205ENST00000463818 CLEC11AQ9Y240 323 aa24.37■■□□□ 1.49
SF3A1-205ENST00000463818 ANP32CO43423 234 aa24.36■■□□□ 1.49
SF3A1-205ENST00000463818 AOC3Q16853 763 aa24.36■■□□□ 1.49
SF3A1-205ENST00000463818 CCDC27Q2M243 656 aa24.36■■□□□ 1.49
SF3A1-205ENST00000463818 CCDC30Q5VVM6 783 aa24.36■■□□□ 1.49
SF3A1-205ENST00000463818 DPP8Q6V1X1 898 aaPredicted RBP24.36■■□□□ 1.49
SF3A1-205ENST00000463818 MPNDQ8N594 471 aa24.36■■□□□ 1.49
SF3A1-205ENST00000463818 TSPYL6Q8N831 410 aa24.36■■□□□ 1.49
SF3A1-205ENST00000463818 SUPT20HQ8NEM7 779 aa24.36■■□□□ 1.49
SF3A1-205ENST00000463818 CHMP4AQ9BY43 222 aa24.36■■□□□ 1.49
SF3A1-205ENST00000463818 MRS2Q9HD23 443 aa24.36■■□□□ 1.49
SF3A1-205ENST00000463818 SF3B3Q15393 1217 aaKnown RBP24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms