RNA–Protein interactions for RNA: ENST00000463440.1

COL1A1-202, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 614 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-202ENST00000463440 SLX4Q8IY92 1834 aa20.94■□□□□ 0.94
COL1A1-202ENST00000463440 GOLGA2Q08379 1002 aa20.94■□□□□ 0.94
COL1A1-202ENST00000463440 CRY2Q49AN0 593 aa20.94■□□□□ 0.94
COL1A1-202ENST00000463440 NLRP10Q86W26 655 aa20.94■□□□□ 0.94
COL1A1-202ENST00000463440 TSPYL6Q8N831 410 aa20.94■□□□□ 0.94
COL1A1-202ENST00000463440 SBF1O95248 1867 aa20.94■□□□□ 0.94
COL1A1-202ENST00000463440 CACNA1SQ13698 1873 aa20.94■□□□□ 0.94
COL1A1-202ENST00000463440 TNRC6CQ9HCJ0 1690 aaKnown RBP20.93■□□□□ 0.94
COL1A1-202ENST00000463440 NFKBIEO00221 500 aa20.93■□□□□ 0.94
COL1A1-202ENST00000463440 RPGRQ92834 1020 aaKnown RBP20.93■□□□□ 0.94
COL1A1-202ENST00000463440 TWISTNBQ3B726 338 aaPredicted RBP20.92■□□□□ 0.94
COL1A1-202ENST00000463440 SLC10A5Q5PT55 438 aa20.92■□□□□ 0.94
COL1A1-202ENST00000463440 RIC3Q7Z5B4 369 aa20.92■□□□□ 0.94
COL1A1-202ENST00000463440 NLRP3Q96P20 1036 aa20.92■□□□□ 0.94
COL1A1-202ENST00000463440 PHAXQ9H814 394 aaKnown RBP20.92■□□□□ 0.94
COL1A1-202ENST00000463440 TRMT112Q9UI30 125 aaKnown RBP20.92■□□□□ 0.94
COL1A1-202ENST00000463440 STK31Q9BXU1 1019 aa20.91■□□□□ 0.94
COL1A1-202ENST00000463440 ZC3H4Q9UPT8 1303 aaKnown RBP20.91■□□□□ 0.94
COL1A1-202ENST00000463440 LTBP3Q9NS15 1303 aa20.9■□□□□ 0.94
COL1A1-202ENST00000463440 FANCIQ9NVI1 1328 aa20.9■□□□□ 0.94
COL1A1-202ENST00000463440 HOXA10P31260 410 aaPredicted RBP20.9■□□□□ 0.94
COL1A1-202ENST00000463440 CCDC93Q567U6 631 aa20.9■□□□□ 0.94
COL1A1-202ENST00000463440 C7orf43Q8WVR3 580 aa20.9■□□□□ 0.94
COL1A1-202ENST00000463440 RBM17Q96I25 401 aaKnown RBP20.9■□□□□ 0.94
COL1A1-202ENST00000463440 ISCA1Q9BUE6 129 aa20.9■□□□□ 0.94
COL1A1-202ENST00000463440 TAOK3Q9H2K8 898 aa20.9■□□□□ 0.94
COL1A1-202ENST00000463440 FER1L6Q2WGJ9 1857 aa20.9■□□□□ 0.94
COL1A1-202ENST00000463440 SH3TC1Q8TE82 1336 aa20.89■□□□□ 0.93
COL1A1-202ENST00000463440 DDX58O95786 925 aaKnown RBP20.89■□□□□ 0.93
COL1A1-202ENST00000463440 C1QTNF8P60827 252 aa20.89■□□□□ 0.93
COL1A1-202ENST00000463440 ATP5J2-PTCD1G3V325 749 aa20.88■□□□□ 0.93
COL1A1-202ENST00000463440 PRELPP51888 382 aa20.88■□□□□ 0.93
COL1A1-202ENST00000463440 CRAMP1Q96RY5 1269 aa20.88■□□□□ 0.93
COL1A1-202ENST00000463440 MYH16Q9H6N6 1097 aa20.88■□□□□ 0.93
COL1A1-202ENST00000463440 KDM2BQ8NHM5 1336 aa20.87■□□□□ 0.93
COL1A1-202ENST00000463440 TRIM28Q13263 835 aaKnown RBP20.87■□□□□ 0.93
COL1A1-202ENST00000463440 RTKN2Q8IZC4 609 aa20.87■□□□□ 0.93
COL1A1-202ENST00000463440 CCDC88AQ3V6T2 1871 aa20.86■□□□□ 0.93
COL1A1-202ENST00000463440 CCER2I3L3R5 266 aa20.86■□□□□ 0.93
COL1A1-202ENST00000463440 HCLS1P14317 486 aaPredicted RBP20.86■□□□□ 0.93
COL1A1-202ENST00000463440 C3orf67Q6ZVT6 689 aa20.86■□□□□ 0.93
COL1A1-202ENST00000463440 TCERG1O14776 1098 aaKnown RBP20.85■□□□□ 0.93
COL1A1-202ENST00000463440 CC2D2BQ6DHV5 1058 aa20.85■□□□□ 0.93
COL1A1-202ENST00000463440 SYNE4Q8N205 404 aa20.85■□□□□ 0.93
COL1A1-202ENST00000463440 KIF3CO14782 793 aa20.84■□□□□ 0.93
COL1A1-202ENST00000463440 FKBP4Q02790 459 aaKnown RBP eCLIP20.84■□□□□ 0.93
COL1A1-202ENST00000463440 EXOSC9Q06265 439 aaKnown RBP20.84■□□□□ 0.93
COL1A1-202ENST00000463440 ZNF428Q96B54 188 aa20.84■□□□□ 0.93
COL1A1-202ENST00000463440 MYD88Q99836 296 aa20.84■□□□□ 0.93
COL1A1-202ENST00000463440 PPEF1O14829 653 aaPredicted RBP20.83■□□□□ 0.93
COL1A1-202ENST00000463440 SLC4A2P04920 1241 aa20.83■□□□□ 0.93
COL1A1-202ENST00000463440 GRIPAP1Q4V328 841 aa20.83■□□□□ 0.93
COL1A1-202ENST00000463440 OLFM4Q6UX06 510 aa20.83■□□□□ 0.93
COL1A1-202ENST00000463440 KSR2Q6VAB6 950 aa20.83■□□□□ 0.93
COL1A1-202ENST00000463440 FAM89AQ96GI7 184 aa20.83■□□□□ 0.93
COL1A1-202ENST00000463440 METTL22Q9BUU2 404 aaPredicted RBP20.83■□□□□ 0.93
COL1A1-202ENST00000463440 NMRK2Q9NPI5 230 aa20.83■□□□□ 0.93
COL1A1-202ENST00000463440 SPINK5Q9NQ38 1064 aaPredicted RBP20.83■□□□□ 0.93
COL1A1-202ENST00000463440 TIAM2Q8IVF5 1701 aa20.82■□□□□ 0.92
COL1A1-202ENST00000463440 VAMP4O75379 141 aa20.82■□□□□ 0.92
COL1A1-202ENST00000463440 CCDC191Q8NCU4 936 aa20.82■□□□□ 0.92
COL1A1-202ENST00000463440 TMX4Q9H1E5 349 aaPredicted RBP20.82■□□□□ 0.92
COL1A1-202ENST00000463440 MAP3K2Q9Y2U5 619 aa20.82■□□□□ 0.92
COL1A1-202ENST00000463440 DICER1Q9UPY3 1922 aaKnown RBP20.82■□□□□ 0.92
COL1A1-202ENST00000463440 PI4KAP2A4QPH2 592 aa20.81■□□□□ 0.92
COL1A1-202ENST00000463440 GLTPD2A6NH11 291 aa20.81■□□□□ 0.92
COL1A1-202ENST00000463440 HSP90B1P14625 803 aaKnown RBP20.81■□□□□ 0.92
COL1A1-202ENST00000463440 DPY19L2Q6NUT2 758 aa20.81■□□□□ 0.92
COL1A1-202ENST00000463440 DDX46Q7L014 1031 aaKnown RBP20.81■□□□□ 0.92
COL1A1-202ENST00000463440 PI4KAP1Q8N8J0 262 aa20.81■□□□□ 0.92
COL1A1-202ENST00000463440 ABCC4O15439 1325 aa20.8■□□□□ 0.92
COL1A1-202ENST00000463440 ZNF521Q96K83 1311 aa20.8■□□□□ 0.92
COL1A1-202ENST00000463440 LAMB2P55268 1798 aa20.8■□□□□ 0.92
COL1A1-202ENST00000463440 NEXNQ0ZGT2 675 aa20.8■□□□□ 0.92
COL1A1-202ENST00000463440 RTL5Q5HYW3 569 aaPredicted RBP20.8■□□□□ 0.92
COL1A1-202ENST00000463440 ZBTB38Q8NAP3 1195 aaPredicted RBP20.8■□□□□ 0.92
COL1A1-202ENST00000463440 PSMD1Q99460 953 aa20.8■□□□□ 0.92
COL1A1-202ENST00000463440 CWC25Q9NXE8 425 aaPredicted RBP20.8■□□□□ 0.92
COL1A1-202ENST00000463440 IRS4O14654 1257 aaPredicted RBP20.79■□□□□ 0.92
COL1A1-202ENST00000463440 BBOX1O75936 387 aa20.79■□□□□ 0.92
COL1A1-202ENST00000463440 G2E3Q7L622 706 aa20.79■□□□□ 0.92
COL1A1-202ENST00000463440 ZNF277Q9NRM2 450 aaPredicted RBP20.79■□□□□ 0.92
COL1A1-202ENST00000463440 CACNA1FO60840 1977 aa20.78■□□□□ 0.92
COL1A1-202ENST00000463440 PCCAP05165 728 aaPredicted RBP20.78■□□□□ 0.92
COL1A1-202ENST00000463440 FLIIQ13045 1269 aa20.78■□□□□ 0.92
COL1A1-202ENST00000463440 C16orf71Q8IYS4 520 aaPredicted RBP20.78■□□□□ 0.92
COL1A1-202ENST00000463440 RRAGCQ9HB90 399 aa20.78■□□□□ 0.92
COL1A1-202ENST00000463440 ATP6V0A2Q9Y487 856 aa20.78■□□□□ 0.92
COL1A1-202ENST00000463440 DDX60Q8IY21 1712 aaKnown RBP20.78■□□□□ 0.92
COL1A1-202ENST00000463440 TOMM70O94826 608 aa20.77■□□□□ 0.92
COL1A1-202ENST00000463440 IARSP41252 1262 aaKnown RBP20.77■□□□□ 0.92
COL1A1-202ENST00000463440 GRAPQ13588 217 aa20.77■□□□□ 0.92
COL1A1-202ENST00000463440 SF3B3Q15393 1217 aaKnown RBP20.77■□□□□ 0.92
COL1A1-202ENST00000463440 GRAPLQ8TC17 118 aaPredicted RBP20.77■□□□□ 0.92
COL1A1-202ENST00000463440 SNED1Q8TER0 1413 aa20.77■□□□□ 0.91
COL1A1-202ENST00000463440 FKBP5Q13451 457 aaPredicted RBP20.76■□□□□ 0.91
COL1A1-202ENST00000463440 TMC4Q7Z404 712 aa20.75■□□□□ 0.91
COL1A1-202ENST00000463440 SP8Q8IXZ3 490 aa20.75■□□□□ 0.91
COL1A1-202ENST00000463440 E9PSI1 815 aa20.74■□□□□ 0.91
COL1A1-202ENST00000463440 IGKV5-2P06315 115 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms