RNA–Protein interactions for RNA: ENST00000462306.5

ERCC3-206, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

TSL 1 (best)

Gene ERCC3, Length 963 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-206ENST00000462306 CHD4Q14839 1912 aa20.37■□□□□ 0.85
ERCC3-206ENST00000462306 RIC1Q4ADV7 1423 aa20.36■□□□□ 0.85
ERCC3-206ENST00000462306 YY1P25490 414 aa20.36■□□□□ 0.85
ERCC3-206ENST00000462306 ZNF622Q969S3 477 aaKnown RBP eCLIP20.36■□□□□ 0.852e-8■■□□□ 13.7
ERCC3-206ENST00000462306 TNRC6CQ9HCJ0 1690 aaKnown RBP20.35■□□□□ 0.85
ERCC3-206ENST00000462306 ATP5J2-PTCD1G3V325 749 aa20.35■□□□□ 0.85
ERCC3-206ENST00000462306 DDX58O95786 925 aaKnown RBP20.35■□□□□ 0.85
ERCC3-206ENST00000462306 TRIM28Q13263 835 aaKnown RBP20.35■□□□□ 0.85
ERCC3-206ENST00000462306 STYK1Q6J9G0 422 aa20.35■□□□□ 0.85
ERCC3-206ENST00000462306 TRMT2AQ8IZ69 625 aaKnown RBP20.35■□□□□ 0.85
ERCC3-206ENST00000462306 MASTLQ96GX5 879 aa20.35■□□□□ 0.85
ERCC3-206ENST00000462306 RNF123Q5XPI4 1314 aa20.34■□□□□ 0.85
ERCC3-206ENST00000462306 CRY2Q49AN0 593 aa20.34■□□□□ 0.85
ERCC3-206ENST00000462306 SLC10A5Q5PT55 438 aa20.34■□□□□ 0.85
ERCC3-206ENST00000462306 KSR2Q6VAB6 950 aa20.34■□□□□ 0.85
ERCC3-206ENST00000462306 ADCY9O60503 1353 aa20.34■□□□□ 0.85
ERCC3-206ENST00000462306 NPR1P16066 1061 aa20.33■□□□□ 0.85
ERCC3-206ENST00000462306 SYNE4Q8N205 404 aa20.33■□□□□ 0.85
ERCC3-206ENST00000462306 METTL22Q9BUU2 404 aaPredicted RBP20.33■□□□□ 0.85
ERCC3-206ENST00000462306 TRMT112Q9UI30 125 aaKnown RBP20.33■□□□□ 0.85
ERCC3-206ENST00000462306 MAP3K2Q9Y2U5 619 aa20.33■□□□□ 0.85
ERCC3-206ENST00000462306 PI4KAP2A4QPH2 592 aa20.32■□□□□ 0.84
ERCC3-206ENST00000462306 FLIIQ13045 1269 aa20.32■□□□□ 0.84
ERCC3-206ENST00000462306 ARHGAP27Q6ZUM4 889 aa20.32■□□□□ 0.84
ERCC3-206ENST00000462306 C3orf67Q6ZVT6 689 aa20.32■□□□□ 0.84
ERCC3-206ENST00000462306 PI4KAP1Q8N8J0 262 aa20.32■□□□□ 0.84
ERCC3-206ENST00000462306 CNKSR1Q969H4 720 aa20.32■□□□□ 0.84
ERCC3-206ENST00000462306 ZNF428Q96B54 188 aa20.32■□□□□ 0.84
ERCC3-206ENST00000462306 MYD88Q99836 296 aa20.32■□□□□ 0.84
ERCC3-206ENST00000462306 CACNA1FO60840 1977 aa20.31■□□□□ 0.84
ERCC3-206ENST00000462306 SH3TC1Q8TE82 1336 aa20.3■□□□□ 0.84
ERCC3-206ENST00000462306 PRPF40BQ6NWY9 871 aaKnown RBP20.3■□□□□ 0.84
ERCC3-206ENST00000462306 SLX4Q8IY92 1834 aa20.3■□□□□ 0.84
ERCC3-206ENST00000462306 HCLS1P14317 486 aaPredicted RBP20.29■□□□□ 0.84
ERCC3-206ENST00000462306 HOXA10P31260 410 aaPredicted RBP20.29■□□□□ 0.84
ERCC3-206ENST00000462306 IGKV5-2P06315 115 aa20.28■□□□□ 0.84
ERCC3-206ENST00000462306 HNRNPUQ00839 825 aaKnown RBP eCLIP20.28■□□□□ 0.84
ERCC3-206ENST00000462306 CCDC191Q8NCU4 936 aa20.28■□□□□ 0.84
ERCC3-206ENST00000462306 C7orf43Q8WVR3 580 aa20.28■□□□□ 0.84
ERCC3-206ENST00000462306 FAM89AQ96GI7 184 aa20.28■□□□□ 0.84
ERCC3-206ENST00000462306 NLRP3Q96P20 1036 aa20.28■□□□□ 0.84
ERCC3-206ENST00000462306 C21orf2O43822 256 aa20.27■□□□□ 0.84
ERCC3-206ENST00000462306 FKBP5Q13451 457 aaPredicted RBP20.27■□□□□ 0.84
ERCC3-206ENST00000462306 ZNF219Q9P2Y4 722 aaPredicted RBP20.27■□□□□ 0.84
ERCC3-206ENST00000462306 ALDH1B1P30837 517 aa20.26■□□□□ 0.83
ERCC3-206ENST00000462306 ZBTB38Q8NAP3 1195 aaPredicted RBP20.26■□□□□ 0.83
ERCC3-206ENST00000462306 RPGRQ92834 1020 aaKnown RBP20.26■□□□□ 0.83
ERCC3-206ENST00000462306 CWC25Q9NXE8 425 aaPredicted RBP20.26■□□□□ 0.83
ERCC3-206ENST00000462306 CACNA1SQ13698 1873 aa20.25■□□□□ 0.83
ERCC3-206ENST00000462306 RTL5Q5HYW3 569 aaPredicted RBP20.25■□□□□ 0.83
ERCC3-206ENST00000462306 DNAAF4Q8WXU2 420 aa20.25■□□□□ 0.83
ERCC3-206ENST00000462306 CRAMP1Q96RY5 1269 aa20.25■□□□□ 0.83
ERCC3-206ENST00000462306 DDX60Q8IY21 1712 aaKnown RBP20.24■□□□□ 0.83
ERCC3-206ENST00000462306 LAMB2P55268 1798 aa20.24■□□□□ 0.83
ERCC3-206ENST00000462306 NFKBIEO00221 500 aa20.24■□□□□ 0.83
ERCC3-206ENST00000462306 PCCAP05165 728 aaPredicted RBP20.24■□□□□ 0.83
ERCC3-206ENST00000462306 NEXNQ0ZGT2 675 aa20.24■□□□□ 0.83
ERCC3-206ENST00000462306 CWF19L2Q2TBE0 894 aaKnown RBP20.24■□□□□ 0.83
ERCC3-206ENST00000462306 MRPL50Q8N5N7 158 aaKnown RBP20.24■□□□□ 0.83
ERCC3-206ENST00000462306 SSH1Q8WYL5 1049 aa20.24■□□□□ 0.83
ERCC3-206ENST00000462306 RBM17Q96I25 401 aaKnown RBP20.24■□□□□ 0.83
ERCC3-206ENST00000462306 NEURL1BA8MQ27 555 aa20.23■□□□□ 0.83
ERCC3-206ENST00000462306 IRS4O14654 1257 aaPredicted RBP20.23■□□□□ 0.83
ERCC3-206ENST00000462306 PRELPP51888 382 aa20.23■□□□□ 0.83
ERCC3-206ENST00000462306 RASSF7Q02833 373 aa20.23■□□□□ 0.83
ERCC3-206ENST00000462306 ZNF784Q8NCA9 323 aaPredicted RBP20.23■□□□□ 0.83
ERCC3-206ENST00000462306 F6X3S4 739 aa20.22■□□□□ 0.83
ERCC3-206ENST00000462306 CT47B1P0C2W7 299 aaPredicted RBP20.22■□□□□ 0.83
ERCC3-206ENST00000462306 JARID2Q92833 1246 aaPredicted RBP20.22■□□□□ 0.83
ERCC3-206ENST00000462306 SF3B3Q15393 1217 aaKnown RBP20.21■□□□□ 0.83
ERCC3-206ENST00000462306 SOGA3Q5TF21 947 aa20.21■□□□□ 0.83
ERCC3-206ENST00000462306 C9orf131Q5VYM1 1079 aa20.21■□□□□ 0.83
ERCC3-206ENST00000462306 OLFM4Q6UX06 510 aa20.21■□□□□ 0.83
ERCC3-206ENST00000462306 LINS1Q8NG48 757 aa20.21■□□□□ 0.83
ERCC3-206ENST00000462306 FER1L6Q2WGJ9 1857 aa20.21■□□□□ 0.83
ERCC3-206ENST00000462306 SBF1O95248 1867 aa20.2■□□□□ 0.82
ERCC3-206ENST00000462306 ALDH1L2Q3SY69 923 aa20.2■□□□□ 0.82
ERCC3-206ENST00000462306 ABCC4O15439 1325 aa20.2■□□□□ 0.82
ERCC3-206ENST00000462306 LTBP3Q9NS15 1303 aa20.2■□□□□ 0.82
ERCC3-206ENST00000462306 SNED1Q8TER0 1413 aa20.19■□□□□ 0.82
ERCC3-206ENST00000462306 H7C1W4 665 aa20.19■□□□□ 0.82
ERCC3-206ENST00000462306 GCKRQ14397 625 aa20.19■□□□□ 0.82
ERCC3-206ENST00000462306 CCDC93Q567U6 631 aa20.19■□□□□ 0.82
ERCC3-206ENST00000462306 BEND3Q5T5X7 828 aa20.19■□□□□ 0.82
ERCC3-206ENST00000462306 BCL2L13Q9BXK5 485 aa20.19■□□□□ 0.82
ERCC3-206ENST00000462306 CDHR2Q9BYE9 1310 aa20.19■□□□□ 0.82
ERCC3-206ENST00000462306 LMNB1P20700 586 aa20.18■□□□□ 0.82
ERCC3-206ENST00000462306 DDX46Q7L014 1031 aaKnown RBP20.18■□□□□ 0.82
ERCC3-206ENST00000462306 SLC51AQ86UW1 340 aa20.18■□□□□ 0.82
ERCC3-206ENST00000462306 RNF181Q9P0P0 153 aa20.18■□□□□ 0.82
ERCC3-206ENST00000462306 ZBED9Q6R2W3 1325 aa20.18■□□□□ 0.82
ERCC3-206ENST00000462306 PPEF1O14829 653 aaPredicted RBP20.17■□□□□ 0.82
ERCC3-206ENST00000462306 PDE8AO60658 829 aa20.17■□□□□ 0.82
ERCC3-206ENST00000462306 HSP90B1P14625 803 aaKnown RBP20.17■□□□□ 0.82
ERCC3-206ENST00000462306 TAOK3Q9H2K8 898 aa20.17■□□□□ 0.82
ERCC3-206ENST00000462306 BBOX1O75936 387 aa20.16■□□□□ 0.82
ERCC3-206ENST00000462306 CASP7P55210 303 aa20.16■□□□□ 0.82
ERCC3-206ENST00000462306 GRAPQ13588 217 aa20.16■□□□□ 0.82
ERCC3-206ENST00000462306 CC2D2BQ6DHV5 1058 aa20.16■□□□□ 0.82
ERCC3-206ENST00000462306 UBE3BQ7Z3V4 1068 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms