RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 TAS1R3Q7RTX0 852 aa11.18□□□□□ -0.62
USP54-208ENST00000461520 ETNK1Q9HBU6 452 aa11.18□□□□□ -0.62
USP54-208ENST00000461520 TIMMDC1Q9NPL8 285 aa11.18□□□□□ -0.62
USP54-208ENST00000461520 STRCP1A6NGW2 1772 aa11.18□□□□□ -0.62
USP54-208ENST00000461520 WASLO00401 505 aaPredicted RBP11.17□□□□□ -0.62
USP54-208ENST00000461520 PHKA2P46019 1235 aa11.17□□□□□ -0.62
USP54-208ENST00000461520 TMEM132AQ24JP5 1023 aa11.17□□□□□ -0.62
USP54-208ENST00000461520 MAP7D1Q3KQU3 841 aa11.17□□□□□ -0.62
USP54-208ENST00000461520 ESCO1Q5FWF5 840 aa11.17□□□□□ -0.62
USP54-208ENST00000461520 TRIM22Q8IYM9 498 aa11.17□□□□□ -0.62
USP54-208ENST00000461520 SIRT1Q96EB6 747 aa11.17□□□□□ -0.62
USP54-208ENST00000461520 ZNF837Q96EG3 531 aaPredicted RBP11.17□□□□□ -0.62
USP54-208ENST00000461520 ZSCAN10Q96SZ4 725 aaPredicted RBP11.17□□□□□ -0.62
USP54-208ENST00000461520 FHDC1Q9C0D6 1143 aaPredicted RBP11.17□□□□□ -0.62
USP54-208ENST00000461520 ALG2Q9H553 416 aa11.17□□□□□ -0.62
USP54-208ENST00000461520 ADGRL2O95490 1459 aa11.17□□□□□ -0.62
USP54-208ENST00000461520 LMTK2Q8IWU2 1503 aa11.16□□□□□ -0.62
USP54-208ENST00000461520 CFAP65Q6ZU64 1925 aaKnown RBP11.16□□□□□ -0.62
USP54-208ENST00000461520 POM121CA8CG34 1229 aa11.15□□□□□ -0.62
USP54-208ENST00000461520 GPR25O00155 361 aa11.15□□□□□ -0.62
USP54-208ENST00000461520 FAM50AQ14320 339 aaKnown RBP11.15□□□□□ -0.62
USP54-208ENST00000461520 WDR44Q5JSH3 913 aa11.15□□□□□ -0.62
USP54-208ENST00000461520 WWC1Q8IX03 1113 aa11.15□□□□□ -0.62
USP54-208ENST00000461520 UBR1Q8IWV7 1749 aa11.15□□□□□ -0.63
USP54-208ENST00000461520 ARHGAP23Q9P227 1491 aa11.14□□□□□ -0.63
USP54-208ENST00000461520 SCNN1DP51172 638 aa11.14□□□□□ -0.63
USP54-208ENST00000461520 GAS6Q14393 721 aa11.14□□□□□ -0.63
USP54-208ENST00000461520 TMEM214Q6NUQ4 689 aaKnown RBP11.14□□□□□ -0.63
USP54-208ENST00000461520 SYNMO15061 1565 aa11.14□□□□□ -0.63
USP54-208ENST00000461520 SLIT1O75093 1534 aa11.14□□□□□ -0.63
USP54-208ENST00000461520 LRRC7Q96NW7 1537 aa11.14□□□□□ -0.63
USP54-208ENST00000461520 SCAF11Q99590 1463 aaKnown RBP11.13□□□□□ -0.63
USP54-208ENST00000461520 SKIP12755 728 aa11.13□□□□□ -0.63
USP54-208ENST00000461520 WHAMMQ8TF30 809 aa11.13□□□□□ -0.63
USP54-208ENST00000461520 GTPBP3Q969Y2 492 aaKnown RBP11.13□□□□□ -0.63
USP54-208ENST00000461520 ANKRD50Q9ULJ7 1429 aa11.12□□□□□ -0.63
USP54-208ENST00000461520 F11P03951 625 aa11.12□□□□□ -0.63
USP54-208ENST00000461520 LTKP29376 864 aa11.12□□□□□ -0.63
USP54-208ENST00000461520 GDF10P55107 478 aa11.12□□□□□ -0.63
USP54-208ENST00000461520 C4orf17Q53FE4 359 aa11.12□□□□□ -0.63
USP54-208ENST00000461520 GNASQ5JWF2 1037 aa11.12□□□□□ -0.63
USP54-208ENST00000461520 TXNDC2Q86VQ3 553 aa11.12□□□□□ -0.63
USP54-208ENST00000461520 GMCL1Q96IK5 515 aa11.12□□□□□ -0.63
USP54-208ENST00000461520 GPAMQ9HCL2 828 aa11.12□□□□□ -0.63
USP54-208ENST00000461520 EID1Q9Y6B2 187 aa11.12□□□□□ -0.63
USP54-208ENST00000461520 H7C1W4 665 aa11.11□□□□□ -0.63
USP54-208ENST00000461520 GTF2E1P29083 439 aaPredicted RBP11.11□□□□□ -0.63
USP54-208ENST00000461520 IDI1Q13907 227 aa11.11□□□□□ -0.63
USP54-208ENST00000461520 TLR1Q15399 786 aa11.11□□□□□ -0.63
USP54-208ENST00000461520 ADAMTS19Q8TE59 1207 aa11.11□□□□□ -0.63
USP54-208ENST00000461520 TMEM2Q9UHN6 1383 aa11.11□□□□□ -0.63
USP54-208ENST00000461520 NOS1P29475 1434 aa11.1□□□□□ -0.63
USP54-208ENST00000461520 EFCAB6Q5THR3 1501 aa11.1□□□□□ -0.63
USP54-208ENST00000461520 PIK3C2BO00750 1634 aa11.1□□□□□ -0.63
USP54-208ENST00000461520 INHAP05111 366 aa11.1□□□□□ -0.63
USP54-208ENST00000461520 SLURP2P0DP57 97 aa11.1□□□□□ -0.63
USP54-208ENST00000461520 ZNF385CQ66K41 422 aaPredicted RBP11.1□□□□□ -0.63
USP54-208ENST00000461520 SLC52A1Q9NWF4 448 aa11.1□□□□□ -0.63
USP54-208ENST00000461520 KDM5AP29375 1690 aaKnown RBP11.1□□□□□ -0.63
USP54-208ENST00000461520 XIRP1Q702N8 1843 aaKnown RBP11.09□□□□□ -0.63
USP54-208ENST00000461520 RPRD2Q5VT52 1461 aaKnown RBP11.09□□□□□ -0.63
USP54-208ENST00000461520 ADAMTS2O95450 1211 aa11.09□□□□□ -0.63
USP54-208ENST00000461520 FOXR1Q6PIV2 292 aa11.09□□□□□ -0.63
USP54-208ENST00000461520 PPARGC1BQ86YN6 1023 aaKnown RBP11.09□□□□□ -0.63
USP54-208ENST00000461520 SERTAD1Q9UHV2 236 aa11.09□□□□□ -0.63
USP54-208ENST00000461520 ROCK1Q13464 1354 aa11.08□□□□□ -0.64
USP54-208ENST00000461520 DEPDC4Q8N2C3 294 aa11.08□□□□□ -0.64
USP54-208ENST00000461520 SVOPQ8N4V2 548 aa11.08□□□□□ -0.64
USP54-208ENST00000461520 CLUAP1Q96AJ1 413 aa11.08□□□□□ -0.64
USP54-208ENST00000461520 NUCKS1Q9H1E3 243 aaKnown RBP11.08□□□□□ -0.64
USP54-208ENST00000461520 PCDHGA11Q9Y5H2 935 aa11.08□□□□□ -0.64
USP54-208ENST00000461520 A0A1B0GTH6 734 aa11.07□□□□□ -0.64
USP54-208ENST00000461520 TMEM229AB2RXF0 380 aa11.07□□□□□ -0.64
USP54-208ENST00000461520 THBS1P07996 1170 aa11.07□□□□□ -0.64
USP54-208ENST00000461520 NCOA4Q13772 614 aa11.07□□□□□ -0.64
USP54-208ENST00000461520 EML3Q32P44 896 aa11.07□□□□□ -0.64
USP54-208ENST00000461520 HDGFL1Q5TGJ6 251 aa11.07□□□□□ -0.64
USP54-208ENST00000461520 RHBDD1Q8TEB9 315 aa11.07□□□□□ -0.64
USP54-208ENST00000461520 SRSF11Q05519 484 aaKnown RBP11.06□□□□□ -0.64
USP54-208ENST00000461520 NFATC2IPQ8NCF5 419 aa11.06□□□□□ -0.64
USP54-208ENST00000461520 ADGRB3O60242 1522 aa11.05□□□□□ -0.64
USP54-208ENST00000461520 MSX1P28360 303 aa11.05□□□□□ -0.64
USP54-208ENST00000461520 SMTNP53814 917 aa11.05□□□□□ -0.64
USP54-208ENST00000461520 LYPD4Q6UWN0 246 aa11.05□□□□□ -0.64
USP54-208ENST00000461520 TRERF1Q96PN7 1200 aa11.05□□□□□ -0.64
USP54-208ENST00000461520 RUBCNLQ9H714 662 aa11.05□□□□□ -0.64
USP54-208ENST00000461520 ADAMTS8Q9UP79 889 aa11.05□□□□□ -0.64
USP54-208ENST00000461520 NOD1Q9Y239 953 aa11.05□□□□□ -0.64
USP54-208ENST00000461520 TET3O43151 1660 aa11.04□□□□□ -0.64
USP54-208ENST00000461520 UNC13BO14795 1591 aa11.04□□□□□ -0.64
USP54-208ENST00000461520 PLA2G4AP47712 749 aa11.04□□□□□ -0.64
USP54-208ENST00000461520 MBIPQ9NS73 344 aa11.04□□□□□ -0.64
USP54-208ENST00000461520 USP17L5A8MUK1 530 aa11.03□□□□□ -0.64
USP54-208ENST00000461520 GTF2IP78347 998 aa11.03□□□□□ -0.64
USP54-208ENST00000461520 GCC2Q8IWJ2 1684 aa11.02□□□□□ -0.64
USP54-208ENST00000461520 LZTS3O60299 673 aaPredicted RBP11.02□□□□□ -0.65
USP54-208ENST00000461520 KCNA6P17658 529 aa11.02□□□□□ -0.65
USP54-208ENST00000461520 TBC1D9Q6ZT07 1266 aa11.02□□□□□ -0.65
USP54-208ENST00000461520 SLC4A9Q96Q91 983 aa11.02□□□□□ -0.65
USP54-208ENST00000461520 UCN2Q96RP3 112 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms