RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 OLFM4Q6UX06 510 aa29.73■■■□□ 2.35
PTPN4-207ENST00000460162 HSP90AB3PQ58FF7 597 aa29.72■■■□□ 2.35
PTPN4-207ENST00000460162 CC2D2BQ6DHV5 1058 aa29.72■■■□□ 2.35
PTPN4-207ENST00000460162 DDX21Q9NR30 783 aaKnown RBP eCLIP29.72■■■□□ 2.35
PTPN4-207ENST00000460162 LAS1LQ9Y4W2 734 aaKnown RBP29.72■■■□□ 2.35
PTPN4-207ENST00000460162 LAMB2P55268 1798 aa29.72■■■□□ 2.35
PTPN4-207ENST00000460162 KRT24Q2M2I5 525 aa29.71■■■□□ 2.35
PTPN4-207ENST00000460162 ZNF277Q9NRM2 450 aaPredicted RBP29.71■■■□□ 2.35
PTPN4-207ENST00000460162 DDNO94850 711 aaPredicted RBP29.7■■■□□ 2.35
PTPN4-207ENST00000460162 COPS6Q7L5N1 327 aa29.7■■■□□ 2.35
PTPN4-207ENST00000460162 XAGE3Q8WTP9 111 aa29.7■■■□□ 2.35
PTPN4-207ENST00000460162 NECTIN2Q92692 538 aa29.7■■■□□ 2.35
PTPN4-207ENST00000460162 PSMD1Q99460 953 aa29.7■■■□□ 2.35
PTPN4-207ENST00000460162 CFAP44Q96MT7 982 aa29.69■■■□□ 2.34
PTPN4-207ENST00000460162 CRAMP1Q96RY5 1269 aa29.69■■■□□ 2.34
PTPN4-207ENST00000460162 UTP14AQ9BVJ6 771 aaKnown RBP29.69■■■□□ 2.34
PTPN4-207ENST00000460162 IARSP41252 1262 aaKnown RBP29.68■■■□□ 2.34
PTPN4-207ENST00000460162 GRIPAP1Q4V328 841 aa29.68■■■□□ 2.34
PTPN4-207ENST00000460162 RBM17Q96I25 401 aaKnown RBP29.68■■■□□ 2.34
PTPN4-207ENST00000460162 L3MBTL3Q96JM7 780 aaPredicted RBP29.68■■■□□ 2.34
PTPN4-207ENST00000460162 IQCA1LA6NCM1 817 aa29.67■■■□□ 2.34
PTPN4-207ENST00000460162 AIMP1Q12904 312 aaKnown RBP29.67■■■□□ 2.34
PTPN4-207ENST00000460162 HDGFL1Q5TGJ6 251 aa29.67■■■□□ 2.34
PTPN4-207ENST00000460162 CHPF2Q9P2E5 772 aa29.67■■■□□ 2.34
PTPN4-207ENST00000460162 HTRA3P83110 453 aa29.66■■■□□ 2.34
PTPN4-207ENST00000460162 SYNE4Q8N205 404 aa29.66■■■□□ 2.34
PTPN4-207ENST00000460162 KLRG1Q96E93 195 aa29.66■■■□□ 2.34
PTPN4-207ENST00000460162 NLRP3Q96P20 1036 aa29.66■■■□□ 2.34
PTPN4-207ENST00000460162 ZNF541Q9H0D2 1346 aa29.66■■■□□ 2.34
PTPN4-207ENST00000460162 PPEF1O14829 653 aaPredicted RBP29.65■■■□□ 2.34
PTPN4-207ENST00000460162 SLC10A5Q5PT55 438 aa29.65■■■□□ 2.34
PTPN4-207ENST00000460162 C3orf67Q6ZVT6 689 aa29.65■■■□□ 2.34
PTPN4-207ENST00000460162 NLRP10Q86W26 655 aa29.64■■■□□ 2.34
PTPN4-207ENST00000460162 DBF4Q9UBU7 674 aaPredicted RBP29.64■■■□□ 2.34
PTPN4-207ENST00000460162 CALD1Q05682 793 aaKnown RBP29.63■■■□□ 2.33
PTPN4-207ENST00000460162 TCIRG1Q13488 830 aa29.63■■■□□ 2.33
PTPN4-207ENST00000460162 MBIPQ9NS73 344 aa29.63■■■□□ 2.33
PTPN4-207ENST00000460162 FZD9O00144 591 aa29.62■■■□□ 2.33
PTPN4-207ENST00000460162 APAF1O14727 1248 aa29.62■■■□□ 2.33
PTPN4-207ENST00000460162 COL4A5P29400 1685 aa29.62■■■□□ 2.33
PTPN4-207ENST00000460162 DDX60Q8IY21 1712 aaKnown RBP29.62■■■□□ 2.33
PTPN4-207ENST00000460162 ZNF853P0CG23 659 aa29.61■■■□□ 2.33
PTPN4-207ENST00000460162 JDP2Q8WYK2 163 aa29.61■■■□□ 2.33
PTPN4-207ENST00000460162 IFT57Q9NWB7 429 aa29.61■■■□□ 2.33
PTPN4-207ENST00000460162 ADAMTSL1Q8N6G6 1762 aa29.6■■■□□ 2.33
PTPN4-207ENST00000460162 DUSP27Q5VZP5 1158 aa29.6■■■□□ 2.33
PTPN4-207ENST00000460162 CHADLQ6NUI6 762 aa29.6■■■□□ 2.33
PTPN4-207ENST00000460162 PLBD2Q8NHP8 589 aa29.6■■■□□ 2.33
PTPN4-207ENST00000460162 SH3TC1Q8TE82 1336 aa29.6■■■□□ 2.33
PTPN4-207ENST00000460162 JMYQ8N9B5 988 aa29.59■■■□□ 2.33
PTPN4-207ENST00000460162 ABCC4O15439 1325 aa29.59■■■□□ 2.33
PTPN4-207ENST00000460162 GNAI1P63096 354 aa29.58■■■□□ 2.33
PTPN4-207ENST00000460162 TAF1DQ9H5J8 278 aaPredicted RBP29.58■■■□□ 2.33
PTPN4-207ENST00000460162 HYPKQ9NX55 129 aa29.58■■■□□ 2.33
PTPN4-207ENST00000460162 TRMT112Q9UI30 125 aaKnown RBP29.58■■■□□ 2.33
PTPN4-207ENST00000460162 LDHDQ86WU2 507 aa29.57■■■□□ 2.32
PTPN4-207ENST00000460162 GPC2Q8N158 579 aa29.57■■■□□ 2.32
PTPN4-207ENST00000460162 TMX4Q9H1E5 349 aaPredicted RBP29.57■■■□□ 2.32
PTPN4-207ENST00000460162 LRRC37AA6NMS7 1700 aa29.57■■■□□ 2.32
PTPN4-207ENST00000460162 POTEIP0CG38 1075 aa29.56■■■□□ 2.32
PTPN4-207ENST00000460162 POTEJP0CG39 1038 aa29.56■■■□□ 2.32
PTPN4-207ENST00000460162 ANKRD13DQ6ZTN6 518 aa29.56■■■□□ 2.32
PTPN4-207ENST00000460162 HACL1Q9UJ83 578 aa29.56■■■□□ 2.32
PTPN4-207ENST00000460162 ATP6V0A2Q9Y487 856 aa29.56■■■□□ 2.32
PTPN4-207ENST00000460162 HCLS1P14317 486 aaPredicted RBP29.54■■■□□ 2.32
PTPN4-207ENST00000460162 ZEB1P37275 1124 aaPredicted RBP29.54■■■□□ 2.32
PTPN4-207ENST00000460162 SLC51AQ86UW1 340 aa29.54■■■□□ 2.32
PTPN4-207ENST00000460162 LARGE2Q8N3Y3 721 aa29.54■■■□□ 2.32
PTPN4-207ENST00000460162 TCERG1O14776 1098 aaKnown RBP29.53■■■□□ 2.32
PTPN4-207ENST00000460162 EIF6P56537 245 aaKnown RBP29.53■■■□□ 2.32
PTPN4-207ENST00000460162 ISCA1Q9BUE6 129 aa29.53■■■□□ 2.32
PTPN4-207ENST00000460162 BBOX1O75936 387 aa29.51■■■□□ 2.31
PTPN4-207ENST00000460162 EPHX2P34913 555 aa29.51■■■□□ 2.31
PTPN4-207ENST00000460162 DDX46Q7L014 1031 aaKnown RBP29.51■■■□□ 2.31
PTPN4-207ENST00000460162 VPS33BQ9H267 617 aa29.51■■■□□ 2.31
PTPN4-207ENST00000460162 TAF1P21675 1872 aa29.51■■■□□ 2.31
PTPN4-207ENST00000460162 GRAPQ13588 217 aa29.5■■■□□ 2.31
PTPN4-207ENST00000460162 PNMA8AQ86V59 439 aaPredicted RBP29.5■■■□□ 2.31
PTPN4-207ENST00000460162 SUPT20HQ8NEM7 779 aa29.5■■■□□ 2.31
PTPN4-207ENST00000460162 GRAPLQ8TC17 118 aaPredicted RBP29.5■■■□□ 2.31
PTPN4-207ENST00000460162 LTBP1Q14766 1721 aa29.5■■■□□ 2.31
PTPN4-207ENST00000460162 NIM1KQ8IY84 436 aa29.49■■■□□ 2.31
PTPN4-207ENST00000460162 RTFDC1Q9BY42 306 aaPredicted RBP29.49■■■□□ 2.31
PTPN4-207ENST00000460162 CREBZFQ9NS37 354 aa29.49■■■□□ 2.31
PTPN4-207ENST00000460162 PASKQ96RG2 1323 aa29.48■■■□□ 2.31
PTPN4-207ENST00000460162 PPIP5K2O43314 1243 aa29.48■■■□□ 2.31
PTPN4-207ENST00000460162 GOLGA2Q08379 1002 aa29.48■■■□□ 2.31
PTPN4-207ENST00000460162 EAPPQ56P03 285 aaPredicted RBP29.48■■■□□ 2.31
PTPN4-207ENST00000460162 IFFO2Q5TF58 517 aa29.48■■■□□ 2.31
PTPN4-207ENST00000460162 TMC4Q7Z404 712 aa29.48■■■□□ 2.31
PTPN4-207ENST00000460162 SP8Q8IXZ3 490 aa29.48■■■□□ 2.31
PTPN4-207ENST00000460162 DUOX1Q9NRD9 1551 aa29.47■■■□□ 2.31
PTPN4-207ENST00000460162 ATP5J2-PTCD1G3V325 749 aa29.47■■■□□ 2.31
PTPN4-207ENST00000460162 TRIM28Q13263 835 aaKnown RBP29.47■■■□□ 2.31
PTPN4-207ENST00000460162 CHMP4AQ9BY43 222 aa29.47■■■□□ 2.31
PTPN4-207ENST00000460162 AOC3Q16853 763 aa29.46■■■□□ 2.31
PTPN4-207ENST00000460162 DPP8Q6V1X1 898 aaPredicted RBP29.46■■■□□ 2.31
PTPN4-207ENST00000460162 GJA3Q9Y6H8 435 aa29.46■■■□□ 2.31
PTPN4-207ENST00000460162 LMOD1P29536 600 aaPredicted RBP29.45■■■□□ 2.31
PTPN4-207ENST00000460162 CCDC184Q52MB2 194 aa29.45■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms