RNA–Protein interactions for RNA: ENST00000460064.1

CCDC50-203, Transcript of coiled-coil domain containing 50, humanhuman

TSL 2

Gene CCDC50, Length 420 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-203ENST00000460064 CMTR1Q8N1G2 835 aaKnown RBP9.11□□□□□ -0.95
CCDC50-203ENST00000460064 USP20Q9Y2K6 914 aa9.11□□□□□ -0.95
CCDC50-203ENST00000460064 INPP5BP32019 993 aa9.1□□□□□ -0.95
CCDC50-203ENST00000460064 FMR1Q06787 632 aaKnown RBP eCLIP9.1□□□□□ -0.95
CCDC50-203ENST00000460064 ALKBH8Q96BT7 664 aaKnown RBP9.1□□□□□ -0.95
CCDC50-203ENST00000460064 CEP63Q96MT8 703 aa9.1□□□□□ -0.95
CCDC50-203ENST00000460064 CRISPLD1Q9H336 500 aa9.1□□□□□ -0.95
CCDC50-203ENST00000460064 DACH1Q9UI36 760 aa9.1□□□□□ -0.95
CCDC50-203ENST00000460064 RTCBQ9Y3I0 505 aaKnown RBP9.1□□□□□ -0.95
CCDC50-203ENST00000460064 A6NHS1 94 aa9.09□□□□□ -0.95
CCDC50-203ENST00000460064 SOBPA7XYQ1 873 aa9.09□□□□□ -0.95
CCDC50-203ENST00000460064 BCL11AQ9H165 835 aa9.09□□□□□ -0.95
CCDC50-203ENST00000460064 FNDC3AQ9Y2H6 1198 aaKnown RBP9.09□□□□□ -0.95
CCDC50-203ENST00000460064 LDHBP07195 334 aaKnown RBP9.08□□□□□ -0.96
CCDC50-203ENST00000460064 EFHC2Q5JST6 749 aa9.08□□□□□ -0.96
CCDC50-203ENST00000460064 RIPOR1Q6ZS17 1223 aa9.08□□□□□ -0.96
CCDC50-203ENST00000460064 KIAA1522Q9P206 1035 aaPredicted RBP9.08□□□□□ -0.96
CCDC50-203ENST00000460064 SENP3-EIF4A1A0A087X0R7 540 aa9.07□□□□□ -0.96
CCDC50-203ENST00000460064 NEFLP07196 543 aa9.07□□□□□ -0.96
CCDC50-203ENST00000460064 EPB42P16452 691 aa9.07□□□□□ -0.96
CCDC50-203ENST00000460064 FGD1P98174 961 aa9.07□□□□□ -0.96
CCDC50-203ENST00000460064 NLRP8Q86W28 1048 aa9.07□□□□□ -0.96
CCDC50-203ENST00000460064 UBAP1LF5GYI3 381 aa9.06□□□□□ -0.96
CCDC50-203ENST00000460064 ATP2B2Q01814 1243 aa9.06□□□□□ -0.96
CCDC50-203ENST00000460064 WWC3Q9ULE0 1092 aa9.06□□□□□ -0.96
CCDC50-203ENST00000460064 XPCQ01831 940 aaPredicted RBP9.05□□□□□ -0.96
CCDC50-203ENST00000460064 PTSQ03393 145 aa9.05□□□□□ -0.96
CCDC50-203ENST00000460064 TYRO3Q06418 890 aa9.05□□□□□ -0.96
CCDC50-203ENST00000460064 ZCCHC2Q9C0B9 1178 aaKnown RBP9.05□□□□□ -0.96
CCDC50-203ENST00000460064 BRD7Q9NPI1 651 aa9.05□□□□□ -0.96
CCDC50-203ENST00000460064 KCNMB2Q9Y691 235 aa9.05□□□□□ -0.96
CCDC50-203ENST00000460064 PNMA6FA0A0J9YX94 578 aa9.04□□□□□ -0.96
CCDC50-203ENST00000460064 ORC1Q13415 861 aa9.04□□□□□ -0.96
CCDC50-203ENST00000460064 ENOX2Q16206 610 aaKnown RBP9.04□□□□□ -0.96
CCDC50-203ENST00000460064 XKR5Q6UX68 686 aa9.04□□□□□ -0.96
CCDC50-203ENST00000460064 ZNF438Q7Z4V0 828 aa9.04□□□□□ -0.96
CCDC50-203ENST00000460064 CSRNP1Q96S65 589 aa9.04□□□□□ -0.96
CCDC50-203ENST00000460064 SENP2Q9HC62 589 aa9.04□□□□□ -0.96
CCDC50-203ENST00000460064 SLC35F4A4IF30 521 aa9.03□□□□□ -0.96
CCDC50-203ENST00000460064 XYLBO75191 536 aa9.03□□□□□ -0.96
CCDC50-203ENST00000460064 PRPF40AO75400 957 aaKnown RBP9.03□□□□□ -0.96
CCDC50-203ENST00000460064 LBRQ14739 615 aaKnown RBP9.03□□□□□ -0.96
CCDC50-203ENST00000460064 FIGNL1Q6PIW4 674 aa9.03□□□□□ -0.96
CCDC50-203ENST00000460064 KIFC2Q96AC6 838 aa9.03□□□□□ -0.96
CCDC50-203ENST00000460064 DUSP9Q99956 384 aaKnown RBP9.03□□□□□ -0.96
CCDC50-203ENST00000460064 IRX2Q9BZI1 471 aaPredicted RBP9.03□□□□□ -0.96
CCDC50-203ENST00000460064 PARP2Q9UGN5 583 aa9.03□□□□□ -0.96
CCDC50-203ENST00000460064 H7C1W4 665 aa9.02□□□□□ -0.97
CCDC50-203ENST00000460064 EIF1AYO14602 144 aaKnown RBP9.02□□□□□ -0.97
CCDC50-203ENST00000460064 ATXN7O15265 892 aaPredicted RBP9.02□□□□□ -0.97
CCDC50-203ENST00000460064 TNFRSF21O75509 655 aa9.02□□□□□ -0.97
CCDC50-203ENST00000460064 TRIP4Q15650 581 aaPredicted RBP9.02□□□□□ -0.97
CCDC50-203ENST00000460064 SAMD5Q5TGI4 173 aa9.02□□□□□ -0.97
CCDC50-203ENST00000460064 ALG1LQ6GMV1 187 aa9.02□□□□□ -0.97
CCDC50-203ENST00000460064 PDE12Q6L8Q7 609 aaKnown RBP9.02□□□□□ -0.97
CCDC50-203ENST00000460064 SETDB2Q96T68 719 aa9.02□□□□□ -0.97
CCDC50-203ENST00000460064 NUCKS1Q9H1E3 243 aaKnown RBP9.02□□□□□ -0.97
CCDC50-203ENST00000460064 ELP3Q9H9T3 547 aa9.02□□□□□ -0.97
CCDC50-203ENST00000460064 KHNYNO15037 678 aaKnown RBP9.01□□□□□ -0.97
CCDC50-203ENST00000460064 CPNE3O75131 537 aaKnown RBP9.01□□□□□ -0.97
CCDC50-203ENST00000460064 GRNP28799 593 aaKnown RBP9.01□□□□□ -0.97
CCDC50-203ENST00000460064 CCDC155Q8N6L0 562 aa9.01□□□□□ -0.97
CCDC50-203ENST00000460064 DNAJC25Q9H1X3 360 aa9.01□□□□□ -0.97
CCDC50-203ENST00000460064 FOXD3Q9UJU5 478 aaPredicted RBP9.01□□□□□ -0.97
CCDC50-203ENST00000460064 KCNH4Q9UQ05 1017 aa9.01□□□□□ -0.97
CCDC50-203ENST00000460064 PCDHGC4Q9Y5F7 938 aa9.01□□□□□ -0.97
CCDC50-203ENST00000460064 VAMP1P23763 118 aa9□□□□□ -0.97
CCDC50-203ENST00000460064 SFSWAPQ12872 951 aaKnown RBP9□□□□□ -0.97
CCDC50-203ENST00000460064 DBN1Q16643 649 aa9□□□□□ -0.97
CCDC50-203ENST00000460064 FAM161BQ96MY7 647 aa9□□□□□ -0.97
CCDC50-203ENST00000460064 MRS2Q9HD23 443 aa9□□□□□ -0.97
CCDC50-203ENST00000460064 RNF19AQ9NV58 838 aa9□□□□□ -0.97
CCDC50-203ENST00000460064 TMEM63CQ9P1W3 806 aa9□□□□□ -0.97
CCDC50-203ENST00000460064 EGFRP00533 1210 aa8.99□□□□□ -0.97
CCDC50-203ENST00000460064 ZFYVE28Q9HCC9 887 aa8.99□□□□□ -0.97
CCDC50-203ENST00000460064 C11orf16Q9NQ32 467 aa8.99□□□□□ -0.97
CCDC50-203ENST00000460064 GMPR2Q9P2T1 348 aaKnown RBP8.99□□□□□ -0.97
CCDC50-203ENST00000460064 DCDC2BA2VCK2 349 aa8.98□□□□□ -0.97
CCDC50-203ENST00000460064 PHACTR2O75167 634 aa8.98□□□□□ -0.97
CCDC50-203ENST00000460064 SASH3O75995 380 aa8.98□□□□□ -0.97
CCDC50-203ENST00000460064 THBS1P07996 1170 aa8.98□□□□□ -0.97
CCDC50-203ENST00000460064 FAM157BP0CG42 384 aa8.98□□□□□ -0.97
CCDC50-203ENST00000460064 KCNQ4P56696 695 aa8.98□□□□□ -0.97
CCDC50-203ENST00000460064 PSMD2Q13200 908 aa8.98□□□□□ -0.97
CCDC50-203ENST00000460064 TSNAXIP1Q2TAA8 658 aa8.98□□□□□ -0.97
CCDC50-203ENST00000460064 TTC39BQ5VTQ0 682 aaPredicted RBP8.98□□□□□ -0.97
CCDC50-203ENST00000460064 NLRP13Q86W25 1043 aa8.98□□□□□ -0.97
CCDC50-203ENST00000460064 TRIM22Q8IYM9 498 aa8.98□□□□□ -0.97
CCDC50-203ENST00000460064 SNX29Q8TEQ0 813 aa8.98□□□□□ -0.97
CCDC50-203ENST00000460064 TRIM47Q96LD4 638 aa8.98□□□□□ -0.97
CCDC50-203ENST00000460064 BNIP3LO60238 219 aa8.97□□□□□ -0.97
CCDC50-203ENST00000460064 MAPTP10636 758 aaKnown RBP8.97□□□□□ -0.97
CCDC50-203ENST00000460064 ITGAEP38570 1179 aa8.97□□□□□ -0.97
CCDC50-203ENST00000460064 DAB2P98082 770 aa8.97□□□□□ -0.97
CCDC50-203ENST00000460064 TNP2Q05952 138 aa8.97□□□□□ -0.97
CCDC50-203ENST00000460064 CCINQ13939 588 aa8.97□□□□□ -0.97
CCDC50-203ENST00000460064 USPL1Q5W0Q7 1092 aa8.97□□□□□ -0.97
CCDC50-203ENST00000460064 KRT25Q7Z3Z0 450 aa8.97□□□□□ -0.97
CCDC50-203ENST00000460064 TMC4Q7Z404 712 aa8.97□□□□□ -0.97
CCDC50-203ENST00000460064 FBF1Q8TES7 1133 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms