RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 XP32Q5T750 250 aa7.84□□□□□ -1.15
VPS41-209ENST00000457055 SIX5Q8N196 739 aa7.84□□□□□ -1.15
VPS41-209ENST00000457055 TSEN2Q8NCE0 465 aaKnown RBP7.84□□□□□ -1.15
VPS41-209ENST00000457055 TNFRSF25Q93038 417 aa7.84□□□□□ -1.15
VPS41-209ENST00000457055 ANKIB1Q9P2G1 1089 aa7.84□□□□□ -1.15
VPS41-209ENST00000457055 SFI1A8K8P3 1242 aa7.83□□□□□ -1.16
VPS41-209ENST00000457055 PPP1R12BO60237 982 aaPredicted RBP7.83□□□□□ -1.16
VPS41-209ENST00000457055 POTEAQ6S8J7 498 aa7.83□□□□□ -1.16
VPS41-209ENST00000457055 RAB44Q7Z6P3 723 aaPredicted RBP7.83□□□□□ -1.16
VPS41-209ENST00000457055 ERCC6Q03468 1493 aa7.82□□□□□ -1.16
VPS41-209ENST00000457055 M0R082 166 aa7.82□□□□□ -1.16
VPS41-209ENST00000457055 TYRO3Q06418 890 aa7.82□□□□□ -1.16
VPS41-209ENST00000457055 PRRT3Q5FWE3 981 aa7.82□□□□□ -1.16
VPS41-209ENST00000457055 ZNF417Q8TAU3 575 aa7.82□□□□□ -1.16
VPS41-209ENST00000457055 SUSD3Q96L08 255 aa7.82□□□□□ -1.16
VPS41-209ENST00000457055 ZNF587Q96SQ5 575 aaPredicted RBP7.82□□□□□ -1.16
VPS41-209ENST00000457055 ADH7P40394 386 aa7.81□□□□□ -1.16
VPS41-209ENST00000457055 DOC2BQ14184 412 aa7.81□□□□□ -1.16
VPS41-209ENST00000457055 ZNF280CQ8ND82 737 aa7.81□□□□□ -1.16
VPS41-209ENST00000457055 KCNH4Q9UQ05 1017 aa7.81□□□□□ -1.16
VPS41-209ENST00000457055 C21orf2O43822 256 aa7.8□□□□□ -1.16
VPS41-209ENST00000457055 DKK1O94907 266 aa7.8□□□□□ -1.16
VPS41-209ENST00000457055 ALBP02768 609 aa7.8□□□□□ -1.16
VPS41-209ENST00000457055 RASA1P20936 1047 aa7.8□□□□□ -1.16
VPS41-209ENST00000457055 GATA4P43694 442 aa7.8□□□□□ -1.16
VPS41-209ENST00000457055 KCNQ4P56696 695 aa7.8□□□□□ -1.16
VPS41-209ENST00000457055 GLMNQ92990 594 aa7.8□□□□□ -1.16
VPS41-209ENST00000457055 STARD13Q9Y3M8 1113 aa7.8□□□□□ -1.16
VPS41-209ENST00000457055 ALDH16A1Q8IZ83 802 aa7.79□□□□□ -1.16
VPS41-209ENST00000457055 BHMTQ93088 406 aa7.79□□□□□ -1.16
VPS41-209ENST00000457055 CLUAP1Q96AJ1 413 aa7.79□□□□□ -1.16
VPS41-209ENST00000457055 PRDM6Q9NQX0 595 aa7.79□□□□□ -1.16
VPS41-209ENST00000457055 TFIP11Q9UBB9 837 aaKnown RBP7.79□□□□□ -1.16
VPS41-209ENST00000457055 FAM229AH3BQW9 127 aa7.78□□□□□ -1.16
VPS41-209ENST00000457055 APBA3O96018 575 aa7.78□□□□□ -1.16
VPS41-209ENST00000457055 SEC13P55735 322 aa7.78□□□□□ -1.16
VPS41-209ENST00000457055 FGD1P98174 961 aa7.78□□□□□ -1.16
VPS41-209ENST00000457055 HIF1AQ16665 826 aa7.78□□□□□ -1.16
VPS41-209ENST00000457055 C8orf86Q6ZUL3 223 aa7.78□□□□□ -1.16
VPS41-209ENST00000457055 PROSER2Q86WR7 435 aaPredicted RBP7.78□□□□□ -1.16
VPS41-209ENST00000457055 MICALL1Q8N3F8 863 aa7.78□□□□□ -1.16
VPS41-209ENST00000457055 CHMP7Q8WUX9 453 aaPredicted RBP7.78□□□□□ -1.16
VPS41-209ENST00000457055 SCG3Q8WXD2 468 aaKnown RBP7.78□□□□□ -1.16
VPS41-209ENST00000457055 NGLY1Q96IV0 654 aa7.78□□□□□ -1.16
VPS41-209ENST00000457055 ARID3AQ99856 593 aa7.78□□□□□ -1.16
VPS41-209ENST00000457055 C2orf49Q9BVC5 232 aaPredicted RBP7.78□□□□□ -1.16
VPS41-209ENST00000457055 SEMA6BQ9H3T3 888 aa7.78□□□□□ -1.16
VPS41-209ENST00000457055 MAFBQ9Y5Q3 323 aaPredicted RBP7.78□□□□□ -1.16
VPS41-209ENST00000457055 ATAD2Q6PL18 1390 aa7.78□□□□□ -1.16
VPS41-209ENST00000457055 TBC1D8BQ0IIM8 1120 aa7.77□□□□□ -1.17
VPS41-209ENST00000457055 COL9A3Q14050 684 aaPredicted RBP7.77□□□□□ -1.17
VPS41-209ENST00000457055 BTLAQ7Z6A9 289 aa7.77□□□□□ -1.17
VPS41-209ENST00000457055 Q8N3U1 123 aa7.77□□□□□ -1.17
VPS41-209ENST00000457055 STAG2Q8N3U4 1231 aa7.77□□□□□ -1.17
VPS41-209ENST00000457055 CENPBP07199 599 aaPredicted RBP7.76□□□□□ -1.17
VPS41-209ENST00000457055 NID1P14543 1247 aa7.76□□□□□ -1.17
VPS41-209ENST00000457055 LARP1Q6PKG0 1096 aaKnown RBP7.76□□□□□ -1.17
VPS41-209ENST00000457055 GAS2L2Q8NHY3 880 aa7.76□□□□□ -1.17
VPS41-209ENST00000457055 UBE2OQ9C0C9 1292 aaKnown RBP7.76□□□□□ -1.17
VPS41-209ENST00000457055 TRIM28Q13263 835 aaKnown RBP7.75□□□□□ -1.17
VPS41-209ENST00000457055 C20orf204Q6ZNR8 217 aa7.75□□□□□ -1.17
VPS41-209ENST00000457055 FNBP4Q8N3X1 1017 aaPredicted RBP7.75□□□□□ -1.17
VPS41-209ENST00000457055 NACC1Q96RE7 527 aa7.75□□□□□ -1.17
VPS41-209ENST00000457055 LILRB5O75023 590 aa7.74□□□□□ -1.17
VPS41-209ENST00000457055 ITGB7P26010 798 aa7.74□□□□□ -1.17
VPS41-209ENST00000457055 HINFPQ9BQA5 517 aa7.74□□□□□ -1.17
VPS41-209ENST00000457055 IGFLR1Q9H665 355 aa7.74□□□□□ -1.17
VPS41-209ENST00000457055 RTN1Q16799 776 aa7.73□□□□□ -1.17
VPS41-209ENST00000457055 CRTC2Q53ET0 693 aaPredicted RBP7.73□□□□□ -1.17
VPS41-209ENST00000457055 IER5Q5VY09 327 aa7.73□□□□□ -1.17
VPS41-209ENST00000457055 PNMA5Q96PV4 448 aa7.73□□□□□ -1.17
VPS41-209ENST00000457055 SLC6A14Q9UN76 642 aa7.73□□□□□ -1.17
VPS41-209ENST00000457055 SCRIBQ14160 1630 aa7.73□□□□□ -1.17
VPS41-209ENST00000457055 LGR5O75473 907 aa7.72□□□□□ -1.17
VPS41-209ENST00000457055 DPYDQ12882 1025 aa7.72□□□□□ -1.17
VPS41-209ENST00000457055 PTK7Q13308 1070 aa7.72□□□□□ -1.17
VPS41-209ENST00000457055 GRIK4Q16099 956 aa7.72□□□□□ -1.17
VPS41-209ENST00000457055 TRAPPC3LQ5T215 181 aa7.72□□□□□ -1.17
VPS41-209ENST00000457055 CALR3Q96L12 384 aaKnown RBP7.72□□□□□ -1.17
VPS41-209ENST00000457055 EFCC1Q9HA90 598 aa7.72□□□□□ -1.17
VPS41-209ENST00000457055 JPH1Q9HDC5 661 aaPredicted RBP7.72□□□□□ -1.17
VPS41-209ENST00000457055 TPSG1Q9NRR2 321 aa7.72□□□□□ -1.17
VPS41-209ENST00000457055 TGFBR3LH3BV60 316 aa7.71□□□□□ -1.18
VPS41-209ENST00000457055 RSPO4Q2I0M5 234 aaPredicted RBP7.71□□□□□ -1.18
VPS41-209ENST00000457055 PPP1R12CQ9BZL4 782 aa7.71□□□□□ -1.18
VPS41-209ENST00000457055 USP17L15C9J2P7 530 aa7.7□□□□□ -1.18
VPS41-209ENST00000457055 USP17L10C9JJH3 530 aa7.7□□□□□ -1.18
VPS41-209ENST00000457055 USP17L13C9JLJ4 530 aa7.7□□□□□ -1.18
VPS41-209ENST00000457055 USP17L12C9JPN9 530 aa7.7□□□□□ -1.18
VPS41-209ENST00000457055 USP17L11C9JVI0 530 aa7.7□□□□□ -1.18
VPS41-209ENST00000457055 USP17L21D6R901 530 aa7.7□□□□□ -1.18
VPS41-209ENST00000457055 USP17L18D6R9N7 530 aa7.7□□□□□ -1.18
VPS41-209ENST00000457055 USP17L22D6RA61 530 aa7.7□□□□□ -1.18
VPS41-209ENST00000457055 USP17L17D6RBQ6 530 aa7.7□□□□□ -1.18
VPS41-209ENST00000457055 USP17L19D6RCP7 530 aa7.7□□□□□ -1.18
VPS41-209ENST00000457055 USP17L20D6RJB6 530 aa7.7□□□□□ -1.18
VPS41-209ENST00000457055 NFKB1P19838 968 aa7.7□□□□□ -1.18
VPS41-209ENST00000457055 IGFBP4P22692 258 aa7.7□□□□□ -1.18
VPS41-209ENST00000457055 USP17L24Q0WX57 530 aa7.7□□□□□ -1.18
VPS41-209ENST00000457055 ZMYM1Q5SVZ6 1142 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms