RNA–Protein interactions for RNA: ENST00000451492.5

USP54-207, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 509 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-207ENST00000451492 SPEF2Q9C093 1822 aa12.54□□□□□ -0.4
USP54-207ENST00000451492 HOXB7P09629 217 aa12.54□□□□□ -0.4
USP54-207ENST00000451492 PARP10Q53GL7 1025 aa12.54□□□□□ -0.4
USP54-207ENST00000451492 CCDC93Q567U6 631 aa12.54□□□□□ -0.4
USP54-207ENST00000451492 C3orf67Q6ZVT6 689 aa12.54□□□□□ -0.4
USP54-207ENST00000451492 C16orf71Q8IYS4 520 aaPredicted RBP12.54□□□□□ -0.4
USP54-207ENST00000451492 UTP14AQ9BVJ6 771 aaKnown RBP12.54□□□□□ -0.4
USP54-207ENST00000451492 RRAGCQ9HB90 399 aa12.54□□□□□ -0.4
USP54-207ENST00000451492 DBF4Q9UBU7 674 aaPredicted RBP12.54□□□□□ -0.4
USP54-207ENST00000451492 KDM2BQ8NHM5 1336 aa12.54□□□□□ -0.4
USP54-207ENST00000451492 RIC1Q4ADV7 1423 aa12.54□□□□□ -0.4
USP54-207ENST00000451492 HSP90AB3PQ58FF7 597 aa12.53□□□□□ -0.4
USP54-207ENST00000451492 RTL5Q5HYW3 569 aaPredicted RBP12.53□□□□□ -0.4
USP54-207ENST00000451492 C8orf58Q8NAV2 365 aa12.53□□□□□ -0.4
USP54-207ENST00000451492 PHAXQ9H814 394 aaKnown RBP12.53□□□□□ -0.4
USP54-207ENST00000451492 WDR90Q96KV7 1748 aa12.52□□□□□ -0.41
USP54-207ENST00000451492 KLRG2A4D1S0 409 aaPredicted RBP12.52□□□□□ -0.41
USP54-207ENST00000451492 ATP5J2-PTCD1G3V325 749 aa12.52□□□□□ -0.41
USP54-207ENST00000451492 HCLS1P14317 486 aaPredicted RBP12.52□□□□□ -0.41
USP54-207ENST00000451492 ALDH1B1P30837 517 aa12.52□□□□□ -0.41
USP54-207ENST00000451492 SOGA3Q5TF21 947 aa12.52□□□□□ -0.41
USP54-207ENST00000451492 NLRP10Q86W26 655 aa12.52□□□□□ -0.41
USP54-207ENST00000451492 WWC1Q8IX03 1113 aa12.52□□□□□ -0.41
USP54-207ENST00000451492 SYNE4Q8N205 404 aa12.52□□□□□ -0.41
USP54-207ENST00000451492 TSPYL6Q8N831 410 aa12.52□□□□□ -0.41
USP54-207ENST00000451492 HYPKQ9NX55 129 aa12.52□□□□□ -0.41
USP54-207ENST00000451492 TRMT112Q9UI30 125 aaKnown RBP12.52□□□□□ -0.41
USP54-207ENST00000451492 MYH3P11055 1940 aa12.51□□□□□ -0.41
USP54-207ENST00000451492 PPEF1O14829 653 aaPredicted RBP12.51□□□□□ -0.41
USP54-207ENST00000451492 GOLGA2Q08379 1002 aa12.51□□□□□ -0.41
USP54-207ENST00000451492 TCIRG1Q13488 830 aa12.51□□□□□ -0.41
USP54-207ENST00000451492 CRY2Q49AN0 593 aa12.51□□□□□ -0.41
USP54-207ENST00000451492 ANKRD13DQ6ZTN6 518 aa12.51□□□□□ -0.41
USP54-207ENST00000451492 PLBD2Q8NHP8 589 aa12.51□□□□□ -0.41
USP54-207ENST00000451492 RBM17Q96I25 401 aaKnown RBP12.51□□□□□ -0.41
USP54-207ENST00000451492 NLRP3Q96P20 1036 aa12.51□□□□□ -0.41
USP54-207ENST00000451492 ZNF277Q9NRM2 450 aaPredicted RBP12.51□□□□□ -0.41
USP54-207ENST00000451492 CEP350Q5VT06 3117 aa12.51□□□□□ -0.41
USP54-207ENST00000451492 GLTPD2A6NH11 291 aa12.5□□□□□ -0.41
USP54-207ENST00000451492 FKBP4Q02790 459 aaKnown RBP eCLIP12.5□□□□□ -0.41
USP54-207ENST00000451492 RIC3Q7Z5B4 369 aa12.5□□□□□ -0.41
USP54-207ENST00000451492 C7orf43Q8WVR3 580 aa12.5□□□□□ -0.41
USP54-207ENST00000451492 ABCC4O15439 1325 aa12.5□□□□□ -0.41
USP54-207ENST00000451492 LTBP3Q9NS15 1303 aa12.5□□□□□ -0.41
USP54-207ENST00000451492 ZC3H4Q9UPT8 1303 aaKnown RBP12.5□□□□□ -0.41
USP54-207ENST00000451492 COL4A1P02462 1669 aa12.49□□□□□ -0.41
USP54-207ENST00000451492 SH3TC1Q8TE82 1336 aa12.49□□□□□ -0.41
USP54-207ENST00000451492 CCDC27Q2M243 656 aa12.49□□□□□ -0.41
USP54-207ENST00000451492 FAM89AQ96GI7 184 aa12.49□□□□□ -0.41
USP54-207ENST00000451492 MYD88Q99836 296 aa12.49□□□□□ -0.41
USP54-207ENST00000451492 CACNA1FO60840 1977 aa12.49□□□□□ -0.41
USP54-207ENST00000451492 LRRC37AA6NMS7 1700 aa12.48□□□□□ -0.41
USP54-207ENST00000451492 COL4A5P29400 1685 aa12.48□□□□□ -0.41
USP54-207ENST00000451492 FANCIQ9NVI1 1328 aa12.48□□□□□ -0.41
USP54-207ENST00000451492 TOMM70O94826 608 aa12.48□□□□□ -0.41
USP54-207ENST00000451492 HSPA6P17066 643 aa12.48□□□□□ -0.41
USP54-207ENST00000451492 TWISTNBQ3B726 338 aaPredicted RBP12.48□□□□□ -0.41
USP54-207ENST00000451492 CCDC30Q5VVM6 783 aa12.48□□□□□ -0.41
USP54-207ENST00000451492 SCN4AP35499 1836 aa12.48□□□□□ -0.41
USP54-207ENST00000451492 SNED1Q8TER0 1413 aa12.47□□□□□ -0.41
USP54-207ENST00000451492 RNF123Q5XPI4 1314 aa12.47□□□□□ -0.41
USP54-207ENST00000451492 ZNF541Q9H0D2 1346 aa12.47□□□□□ -0.41
USP54-207ENST00000451492 DDNO94850 711 aaPredicted RBP12.47□□□□□ -0.41
USP54-207ENST00000451492 IARSP41252 1262 aaKnown RBP12.47□□□□□ -0.41
USP54-207ENST00000451492 DPY19L2Q6NUT2 758 aa12.47□□□□□ -0.41
USP54-207ENST00000451492 RTKN2Q8IZC4 609 aa12.47□□□□□ -0.41
USP54-207ENST00000451492 ISCA1Q9BUE6 129 aa12.47□□□□□ -0.41
USP54-207ENST00000451492 STK31Q9BXU1 1019 aa12.47□□□□□ -0.41
USP54-207ENST00000451492 HOXA10P31260 410 aaPredicted RBP12.46□□□□□ -0.41
USP54-207ENST00000451492 DDX46Q7L014 1031 aaKnown RBP12.46□□□□□ -0.41
USP54-207ENST00000451492 JARID2Q92833 1246 aaPredicted RBP12.46□□□□□ -0.41
USP54-207ENST00000451492 CRAMP1Q96RY5 1269 aa12.46□□□□□ -0.41
USP54-207ENST00000451492 IL16Q14005 1332 aa12.45□□□□□ -0.42
USP54-207ENST00000451492 DDX58O95786 925 aaKnown RBP12.45□□□□□ -0.42
USP54-207ENST00000451492 RBM46Q8TBY0 533 aaKnown RBP12.45□□□□□ -0.42
USP54-207ENST00000451492 TMX4Q9H1E5 349 aaPredicted RBP12.45□□□□□ -0.42
USP54-207ENST00000451492 MAP3K2Q9Y2U5 619 aa12.45□□□□□ -0.42
USP54-207ENST00000451492 IRS4O14654 1257 aaPredicted RBP12.44□□□□□ -0.42
USP54-207ENST00000451492 VEGFAP15692 232 aaPredicted RBP12.44□□□□□ -0.42
USP54-207ENST00000451492 HTRA3P83110 453 aa12.44□□□□□ -0.42
USP54-207ENST00000451492 EXOSC9Q06265 439 aaKnown RBP12.44□□□□□ -0.42
USP54-207ENST00000451492 SLC10A5Q5PT55 438 aa12.44□□□□□ -0.42
USP54-207ENST00000451492 G2E3Q7L622 706 aa12.44□□□□□ -0.42
USP54-207ENST00000451492 CCDC85AQ96PX6 553 aaPredicted RBP12.44□□□□□ -0.42
USP54-207ENST00000451492 SPINK5Q9NQ38 1064 aaPredicted RBP12.44□□□□□ -0.42
USP54-207ENST00000451492 DUOX1Q9NRD9 1551 aa12.43□□□□□ -0.42
USP54-207ENST00000451492 POTECB2RU33 542 aa12.43□□□□□ -0.42
USP54-207ENST00000451492 GRAPQ13588 217 aa12.43□□□□□ -0.42
USP54-207ENST00000451492 AOC3Q16853 763 aa12.43□□□□□ -0.42
USP54-207ENST00000451492 LARGE2Q8N3Y3 721 aa12.43□□□□□ -0.42
USP54-207ENST00000451492 GRAPLQ8TC17 118 aaPredicted RBP12.43□□□□□ -0.42
USP54-207ENST00000451492 JDP2Q8WYK2 163 aa12.43□□□□□ -0.42
USP54-207ENST00000451492 PSMD1Q99460 953 aa12.43□□□□□ -0.42
USP54-207ENST00000451492 GJA3Q9Y6H8 435 aa12.43□□□□□ -0.42
USP54-207ENST00000451492 LTBP1Q14766 1721 aa12.42□□□□□ -0.42
USP54-207ENST00000451492 PI4KAP2A4QPH2 592 aa12.42□□□□□ -0.42
USP54-207ENST00000451492 PPIP5K2O43314 1243 aa12.42□□□□□ -0.42
USP54-207ENST00000451492 SLC4A2P04920 1241 aa12.42□□□□□ -0.42
USP54-207ENST00000451492 POTEIP0CG38 1075 aa12.42□□□□□ -0.42
USP54-207ENST00000451492 POTEJP0CG39 1038 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms