RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 IGSF1Q8N6C5 1336 aa8.75□□□□□ -1.01
SYNE1-213ENST00000448038 CRACR2BQ8N4Y2 399 aaPredicted RBP8.75□□□□□ -1.01
SYNE1-213ENST00000448038 FAM89AQ96GI7 184 aa8.75□□□□□ -1.01
SYNE1-213ENST00000448038 RTL1A6NKG5 1358 aa8.75□□□□□ -1.01
SYNE1-213ENST00000448038 MPHOSPH10O00566 681 aaKnown RBP8.75□□□□□ -1.01
SYNE1-213ENST00000448038 LDHCP07864 332 aa8.75□□□□□ -1.01
SYNE1-213ENST00000448038 CARD10Q9BWT7 1032 aa8.75□□□□□ -1.01
SYNE1-213ENST00000448038 IQSEC3Q9UPP2 1182 aaPredicted RBP8.75□□□□□ -1.01
SYNE1-213ENST00000448038 CCDC87Q9NVE4 849 aa8.74□□□□□ -1.01
SYNE1-213ENST00000448038 HMGB1P09429 215 aaKnown RBP8.74□□□□□ -1.01
SYNE1-213ENST00000448038 SOGA3Q5TF21 947 aa8.74□□□□□ -1.01
SYNE1-213ENST00000448038 SPTY2D1Q68D10 685 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-213ENST00000448038 DDX11Q96FC9 970 aa8.74□□□□□ -1.01
SYNE1-213ENST00000448038 DIP2BQ9P265 1576 aa8.74□□□□□ -1.01
SYNE1-213ENST00000448038 MADDQ8WXG6 1647 aa8.74□□□□□ -1.01
SYNE1-213ENST00000448038 RANBP6O60518 1105 aaKnown RBP8.74□□□□□ -1.01
SYNE1-213ENST00000448038 MBD3O95983 291 aa8.74□□□□□ -1.01
SYNE1-213ENST00000448038 CCDC83Q8IWF9 413 aa8.74□□□□□ -1.01
SYNE1-213ENST00000448038 CCDC191Q8NCU4 936 aa8.74□□□□□ -1.01
SYNE1-213ENST00000448038 AGLP35573 1532 aa8.74□□□□□ -1.01
SYNE1-213ENST00000448038 TRAK2O60296 914 aa8.74□□□□□ -1.01
SYNE1-213ENST00000448038 GIGYF1O75420 1035 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-213ENST00000448038 ANKRD20A12PQ8NF67 263 aa8.74□□□□□ -1.01
SYNE1-213ENST00000448038 HELBQ8NG08 1087 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-213ENST00000448038 TSR1Q2NL82 804 aaKnown RBP8.74□□□□□ -1.01
SYNE1-213ENST00000448038 PIBF1Q8WXW3 757 aa8.74□□□□□ -1.01
SYNE1-213ENST00000448038 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.74□□□□□ -1.01
SYNE1-213ENST00000448038 PARP3Q9Y6F1 533 aa8.74□□□□□ -1.01
SYNE1-213ENST00000448038 KINO60870 393 aaKnown RBP8.73□□□□□ -1.01
SYNE1-213ENST00000448038 SMC5Q8IY18 1101 aa8.73□□□□□ -1.01
SYNE1-213ENST00000448038 RNF41Q9H4P4 317 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-213ENST00000448038 ADGRL3Q9HAR2 1447 aa8.73□□□□□ -1.01
SYNE1-213ENST00000448038 ERBB3P21860 1342 aa8.73□□□□□ -1.01
SYNE1-213ENST00000448038 KRT85P78386 507 aa8.73□□□□□ -1.01
SYNE1-213ENST00000448038 PARP10Q53GL7 1025 aa8.73□□□□□ -1.01
SYNE1-213ENST00000448038 CCAR1Q8IX12 1150 aaKnown RBP8.73□□□□□ -1.01
SYNE1-213ENST00000448038 ZNF444Q8N0Y2 327 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-213ENST00000448038 JMYQ8N9B5 988 aa8.73□□□□□ -1.01
SYNE1-213ENST00000448038 KIF24Q5T7B8 1368 aa8.73□□□□□ -1.01
SYNE1-213ENST00000448038 WDR17Q8IZU2 1322 aa8.73□□□□□ -1.01
SYNE1-213ENST00000448038 BAG3O95817 575 aa8.73□□□□□ -1.01
SYNE1-213ENST00000448038 TPM1P09493 284 aa8.73□□□□□ -1.01
SYNE1-213ENST00000448038 TFCP2Q12800 502 aa8.73□□□□□ -1.01
SYNE1-213ENST00000448038 CAVIN1Q6NZI2 390 aaKnown RBP8.73□□□□□ -1.01
SYNE1-213ENST00000448038 IQCA1Q86XH1 822 aa8.73□□□□□ -1.01
SYNE1-213ENST00000448038 SH3TC1Q8TE82 1336 aa8.73□□□□□ -1.01
SYNE1-213ENST00000448038 CIZ1Q9ULV3 898 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-213ENST00000448038 TPM3P06753 285 aa8.72□□□□□ -1.01
SYNE1-213ENST00000448038 ZFYP08048 801 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-213ENST00000448038 HAND2P61296 217 aa8.72□□□□□ -1.01
SYNE1-213ENST00000448038 NBPF14Q5TI25 921 aa8.72□□□□□ -1.01
SYNE1-213ENST00000448038 SPATA31A3Q5VYP0 1347 aa8.72□□□□□ -1.01
SYNE1-213ENST00000448038 HCLS1P14317 486 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-213ENST00000448038 TXLNAP40222 546 aa8.72□□□□□ -1.01
SYNE1-213ENST00000448038 WASF1Q92558 559 aa8.72□□□□□ -1.01
SYNE1-213ENST00000448038 USP16Q9Y5T5 823 aa8.72□□□□□ -1.01
SYNE1-213ENST00000448038 ARHGEF40Q8TER5 1519 aa8.72□□□□□ -1.01
SYNE1-213ENST00000448038 ME1P48163 572 aa8.72□□□□□ -1.01
SYNE1-213ENST00000448038 SH2B1Q9NRF2 756 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-213ENST00000448038 TTC41PQ6P2S7 1318 aa8.72□□□□□ -1.01
SYNE1-213ENST00000448038 IFIT3O14879 490 aaKnown RBP8.72□□□□□ -1.01
SYNE1-213ENST00000448038 PCMTD1Q96MG8 357 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-213ENST00000448038 NSFL1CQ9UNZ2 370 aaKnown RBP8.72□□□□□ -1.01
SYNE1-213ENST00000448038 CNBD1Q8NA66 436 aa8.71□□□□□ -1.01
SYNE1-213ENST00000448038 CDK5RAP3Q96JB5 506 aa8.71□□□□□ -1.01
SYNE1-213ENST00000448038 CDK12Q9NYV4 1490 aaPredicted RBP8.71□□□□□ -1.01
SYNE1-213ENST00000448038 CYP7A1P22680 504 aa8.71□□□□□ -1.01
SYNE1-213ENST00000448038 NOL7Q9UMY1 257 aaKnown RBP8.71□□□□□ -1.01
SYNE1-213ENST00000448038 LIMCH1Q9UPQ0 1083 aa8.71□□□□□ -1.01
SYNE1-213ENST00000448038 NBPF7P0C2Y1 421 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-213ENST00000448038 GCKRQ14397 625 aa8.71□□□□□ -1.02
SYNE1-213ENST00000448038 OLFM4Q6UX06 510 aa8.71□□□□□ -1.02
SYNE1-213ENST00000448038 PAG1Q9NWQ8 432 aa8.71□□□□□ -1.02
SYNE1-213ENST00000448038 CCDC196A0A1B0GTZ2 297 aa8.71□□□□□ -1.02
SYNE1-213ENST00000448038 LARP6Q9BRS8 491 aaKnown RBP8.71□□□□□ -1.02
SYNE1-213ENST00000448038 SLC12A7Q9Y666 1083 aa8.71□□□□□ -1.02
SYNE1-213ENST00000448038 PDE8AO60658 829 aa8.71□□□□□ -1.02
SYNE1-213ENST00000448038 PDIA4P13667 645 aaKnown RBP8.71□□□□□ -1.02
SYNE1-213ENST00000448038 ITGA6P23229 1130 aa8.71□□□□□ -1.02
SYNE1-213ENST00000448038 SLC9C2Q5TAH2 1124 aa8.71□□□□□ -1.02
SYNE1-213ENST00000448038 ESYT1Q9BSJ8 1104 aa8.71□□□□□ -1.02
SYNE1-213ENST00000448038 SETBP1Q9Y6X0 1596 aa8.71□□□□□ -1.02
SYNE1-213ENST00000448038 GSTO1P78417 241 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 PLEKHM2Q8IWE5 1019 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 ZGPATQ8N5A5 531 aaKnown RBP8.7□□□□□ -1.02
SYNE1-213ENST00000448038 CTCFLQ8NI51 663 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-213ENST00000448038 CRNKL1Q9BZJ0 848 aaKnown RBP8.7□□□□□ -1.02
SYNE1-213ENST00000448038 HMG20BQ9P0W2 317 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 ZNF804AQ7Z570 1209 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 SUCLG2Q96I99 432 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 NEK1Q96PY6 1258 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 NAT10Q9H0A0 1025 aaKnown RBP8.7□□□□□ -1.02
SYNE1-213ENST00000448038 STK32BQ9NY57 414 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 TRPC5Q9UL62 973 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-213ENST00000448038 CDC42BPGQ6DT37 1551 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 EYA2O00167 538 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 MCMDC2Q4G0Z9 681 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 CCDC82Q8N4S0 544 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 TBC1D32Q96NH3 1257 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 QTRT2Q9H974 415 aaKnown RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 344.7 ms