RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 GAS2L2Q8NHY3 880 aa8.17□□□□□ -1.1
VPS29-202ENST00000447578 TNFRSF25Q93038 417 aa8.17□□□□□ -1.1
VPS29-202ENST00000447578 TIMELESSQ9UNS1 1208 aa8.17□□□□□ -1.1
VPS29-202ENST00000447578 SPATA31C1P0DKV0 1188 aa8.16□□□□□ -1.1
VPS29-202ENST00000447578 YBX3P16989 372 aaKnown RBP eCLIP8.16□□□□□ -1.11e-6■■□□□ 11.7
VPS29-202ENST00000447578 RASA1P20936 1047 aa8.16□□□□□ -1.1
VPS29-202ENST00000447578 ADH7P40394 386 aa8.16□□□□□ -1.1
VPS29-202ENST00000447578 TYRO3Q06418 890 aa8.16□□□□□ -1.1
VPS29-202ENST00000447578 ATAD2Q6PL18 1390 aa8.16□□□□□ -1.1
VPS29-202ENST00000447578 ALDH16A1Q8IZ83 802 aa8.16□□□□□ -1.1
VPS29-202ENST00000447578 CHMP7Q8WUX9 453 aaPredicted RBP8.16□□□□□ -1.1
VPS29-202ENST00000447578 SCG3Q8WXD2 468 aaKnown RBP8.16□□□□□ -1.1
VPS29-202ENST00000447578 GLMNQ92990 594 aa8.16□□□□□ -1.1
VPS29-202ENST00000447578 ANKIB1Q9P2G1 1089 aa8.16□□□□□ -1.1
VPS29-202ENST00000447578 KCNH4Q9UQ05 1017 aa8.16□□□□□ -1.1
VPS29-202ENST00000447578 TMEM132AQ24JP5 1023 aa8.15□□□□□ -1.1
VPS29-202ENST00000447578 NKAPLQ5M9Q1 402 aa8.15□□□□□ -1.1
VPS29-202ENST00000447578 MICALL1Q8N3F8 863 aa8.15□□□□□ -1.1
VPS29-202ENST00000447578 FNBP4Q8N3X1 1017 aaPredicted RBP8.15□□□□□ -1.1
VPS29-202ENST00000447578 NGLY1Q96IV0 654 aa8.15□□□□□ -1.1
VPS29-202ENST00000447578 RBM19Q9Y4C8 960 aaKnown RBP8.15□□□□□ -1.1
VPS29-202ENST00000447578 KCNQ4P56696 695 aa8.14□□□□□ -1.11
VPS29-202ENST00000447578 ERICH6Q7L0X2 663 aa8.14□□□□□ -1.11
VPS29-202ENST00000447578 BHMTQ93088 406 aa8.14□□□□□ -1.11
VPS29-202ENST00000447578 C2orf49Q9BVC5 232 aaPredicted RBP8.14□□□□□ -1.11
VPS29-202ENST00000447578 MAFBQ9Y5Q3 323 aaPredicted RBP8.14□□□□□ -1.11
VPS29-202ENST00000447578 NEUROD1Q13562 356 aa8.13□□□□□ -1.11
VPS29-202ENST00000447578 PRRT3Q5FWE3 981 aa8.13□□□□□ -1.11
VPS29-202ENST00000447578 BTLAQ7Z6A9 289 aa8.13□□□□□ -1.11
VPS29-202ENST00000447578 PROSER2Q86WR7 435 aaPredicted RBP8.13□□□□□ -1.11
VPS29-202ENST00000447578 KRTAP4-9Q9BYQ8 210 aa8.13□□□□□ -1.11
VPS29-202ENST00000447578 IGFLR1Q9H665 355 aa8.13□□□□□ -1.11
VPS29-202ENST00000447578 DYRK3O43781 588 aa8.12□□□□□ -1.11
VPS29-202ENST00000447578 SEC13P55735 322 aa8.12□□□□□ -1.11
VPS29-202ENST00000447578 TBC1D8BQ0IIM8 1120 aa8.12□□□□□ -1.11
VPS29-202ENST00000447578 LRP8Q14114 963 aa8.12□□□□□ -1.11
VPS29-202ENST00000447578 C20orf204Q6ZNR8 217 aa8.12□□□□□ -1.11
VPS29-202ENST00000447578 SPDYE3A6NKU9 549 aa8.11□□□□□ -1.11
VPS29-202ENST00000447578 NID1P14543 1247 aa8.11□□□□□ -1.11
VPS29-202ENST00000447578 TXKP42681 527 aa8.11□□□□□ -1.11
VPS29-202ENST00000447578 GRIK4Q16099 956 aa8.11□□□□□ -1.11
VPS29-202ENST00000447578 CRTC2Q53ET0 693 aaPredicted RBP8.11□□□□□ -1.11
VPS29-202ENST00000447578 HINFPQ9BQA5 517 aa8.11□□□□□ -1.11
VPS29-202ENST00000447578 PRDM6Q9NQX0 595 aa8.11□□□□□ -1.11
VPS29-202ENST00000447578 DPYDQ12882 1025 aa8.1□□□□□ -1.11
VPS29-202ENST00000447578 TRIM28Q13263 835 aaKnown RBP8.1□□□□□ -1.11
VPS29-202ENST00000447578 LARP1Q6PKG0 1096 aaKnown RBP8.1□□□□□ -1.11
VPS29-202ENST00000447578 STAG2Q8N3U4 1231 aa8.1□□□□□ -1.11
VPS29-202ENST00000447578 APBA3O96018 575 aa8.09□□□□□ -1.11
VPS29-202ENST00000447578 PTK7Q13308 1070 aa8.09□□□□□ -1.11
VPS29-202ENST00000447578 KANK4Q5T7N3 995 aaPredicted RBP8.09□□□□□ -1.11
VPS29-202ENST00000447578 UBE2OQ9C0C9 1292 aaKnown RBP8.09□□□□□ -1.11
VPS29-202ENST00000447578 BCS1LQ9Y276 419 aa8.09□□□□□ -1.11
VPS29-202ENST00000447578 PAX4O43316 350 aa8.08□□□□□ -1.12
VPS29-202ENST00000447578 PRSS36Q5K4E3 855 aa8.08□□□□□ -1.12
VPS29-202ENST00000447578 TRAPPC3LQ5T215 181 aa8.08□□□□□ -1.12
VPS29-202ENST00000447578 MCTP1Q6DN14 999 aa8.08□□□□□ -1.12
VPS29-202ENST00000447578 NUDT8Q8WV74 236 aa8.08□□□□□ -1.12
VPS29-202ENST00000447578 CALR3Q96L12 384 aaKnown RBP8.08□□□□□ -1.12
VPS29-202ENST00000447578 PPP1R12CQ9BZL4 782 aa8.08□□□□□ -1.12
VPS29-202ENST00000447578 GSX2Q9BZM3 304 aa8.08□□□□□ -1.12
VPS29-202ENST00000447578 TPSG1Q9NRR2 321 aa8.08□□□□□ -1.12
VPS29-202ENST00000447578 DMGDHQ9UI17 866 aaKnown RBP8.07□□□□□ -1.12
VPS29-202ENST00000447578 SLC6A14Q9UN76 642 aa8.07□□□□□ -1.12
VPS29-202ENST00000447578 LILRB5O75023 590 aa8.06□□□□□ -1.12
VPS29-202ENST00000447578 GRNP28799 593 aaKnown RBP8.06□□□□□ -1.12
VPS29-202ENST00000447578 RTN1Q16799 776 aa8.06□□□□□ -1.12
VPS29-202ENST00000447578 KRTAP4-2Q9BYR5 136 aa8.06□□□□□ -1.12
VPS29-202ENST00000447578 JPH1Q9HDC5 661 aaPredicted RBP8.06□□□□□ -1.12
VPS29-202ENST00000447578 KLK14Q9P0G3 267 aa8.06□□□□□ -1.12
VPS29-202ENST00000447578 HYAL3O43820 417 aaPredicted RBP8.05□□□□□ -1.12
VPS29-202ENST00000447578 LMOD1P29536 600 aaPredicted RBP8.05□□□□□ -1.12
VPS29-202ENST00000447578 HIF1AQ16665 826 aa8.05□□□□□ -1.12
VPS29-202ENST00000447578 ANKMY2Q8IV38 441 aa8.05□□□□□ -1.12
VPS29-202ENST00000447578 DNAJB12Q9NXW2 375 aaKnown RBP8.05□□□□□ -1.12
VPS29-202ENST00000447578 NAGPAQ9UK23 515 aa8.05□□□□□ -1.12
VPS29-202ENST00000447578 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.05□□□□□ -1.12
VPS29-202ENST00000447578 USP17L15C9J2P7 530 aa8.04□□□□□ -1.12
VPS29-202ENST00000447578 USP17L10C9JJH3 530 aa8.04□□□□□ -1.12
VPS29-202ENST00000447578 USP17L13C9JLJ4 530 aa8.04□□□□□ -1.12
VPS29-202ENST00000447578 USP17L12C9JPN9 530 aa8.04□□□□□ -1.12
VPS29-202ENST00000447578 USP17L11C9JVI0 530 aa8.04□□□□□ -1.12
VPS29-202ENST00000447578 USP17L21D6R901 530 aa8.04□□□□□ -1.12
VPS29-202ENST00000447578 USP17L18D6R9N7 530 aa8.04□□□□□ -1.12
VPS29-202ENST00000447578 USP17L22D6RA61 530 aa8.04□□□□□ -1.12
VPS29-202ENST00000447578 USP17L17D6RBQ6 530 aa8.04□□□□□ -1.12
VPS29-202ENST00000447578 USP17L19D6RCP7 530 aa8.04□□□□□ -1.12
VPS29-202ENST00000447578 USP17L20D6RJB6 530 aa8.04□□□□□ -1.12
VPS29-202ENST00000447578 TGFBR3LH3BV60 316 aa8.04□□□□□ -1.12
VPS29-202ENST00000447578 NFKB1P19838 968 aa8.04□□□□□ -1.12
VPS29-202ENST00000447578 IGFBP4P22692 258 aa8.04□□□□□ -1.12
VPS29-202ENST00000447578 USP17L24Q0WX57 530 aa8.04□□□□□ -1.12
VPS29-202ENST00000447578 CCINQ13939 588 aa8.04□□□□□ -1.12
VPS29-202ENST00000447578 PNMA5Q96PV4 448 aa8.04□□□□□ -1.12
VPS29-202ENST00000447578 ARID1BQ8NFD5 2236 aaPredicted RBP8.03□□□□□ -1.12
VPS29-202ENST00000447578 A0A0A0MRY4 1105 aa8.03□□□□□ -1.12
VPS29-202ENST00000447578 SELPP16109 830 aa8.03□□□□□ -1.12
VPS29-202ENST00000447578 IER5Q5VY09 327 aa8.03□□□□□ -1.12
VPS29-202ENST00000447578 PSAPL1Q6NUJ1 521 aa8.03□□□□□ -1.12
VPS29-202ENST00000447578 VRTNQ9H8Y1 702 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms