RNA–Protein interactions for RNA: ENST00000442029.5

PTPRN-206, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 541 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-206ENST00000442029 RTKN2Q8IZC4 609 aa18.79■□□□□ 0.6
PTPRN-206ENST00000442029 XAGE3Q8WTP9 111 aa18.79■□□□□ 0.6
PTPRN-206ENST00000442029 NTSR2O95665 410 aa18.78■□□□□ 0.6
PTPRN-206ENST00000442029 FKBP4Q02790 459 aaKnown RBP eCLIP18.78■□□□□ 0.6
PTPRN-206ENST00000442029 CRY2Q49AN0 593 aa18.78■□□□□ 0.6
PTPRN-206ENST00000442029 C7orf43Q8WVR3 580 aa18.78■□□□□ 0.6
PTPRN-206ENST00000442029 RBM17Q96I25 401 aaKnown RBP18.78■□□□□ 0.6
PTPRN-206ENST00000442029 UTP14AQ9BVJ6 771 aaKnown RBP18.78■□□□□ 0.6
PTPRN-206ENST00000442029 CHPF2Q9P2E5 772 aa18.78■□□□□ 0.6
PTPRN-206ENST00000442029 SCN4AP35499 1836 aa18.77■□□□□ 0.6
PTPRN-206ENST00000442029 GNAI1P63096 354 aa18.77■□□□□ 0.6
PTPRN-206ENST00000442029 SMC1BQ8NDV3 1235 aa18.77■□□□□ 0.6
PTPRN-206ENST00000442029 NLRP3Q96P20 1036 aa18.77■□□□□ 0.6
PTPRN-206ENST00000442029 MBIPQ9NS73 344 aa18.77■□□□□ 0.6
PTPRN-206ENST00000442029 IFT57Q9NWB7 429 aa18.76■□□□□ 0.59
PTPRN-206ENST00000442029 DBF4Q9UBU7 674 aaPredicted RBP18.76■□□□□ 0.59
PTPRN-206ENST00000442029 RNF123Q5XPI4 1314 aa18.75■□□□□ 0.59
PTPRN-206ENST00000442029 DUSP27Q5VZP5 1158 aa18.75■□□□□ 0.59
PTPRN-206ENST00000442029 CC2D2BQ6DHV5 1058 aa18.75■□□□□ 0.59
PTPRN-206ENST00000442029 OLFM4Q6UX06 510 aa18.75■□□□□ 0.59
PTPRN-206ENST00000442029 TMX4Q9H1E5 349 aaPredicted RBP18.75■□□□□ 0.59
PTPRN-206ENST00000442029 ZNF277Q9NRM2 450 aaPredicted RBP18.75■□□□□ 0.59
PTPRN-206ENST00000442029 ZNF316A6NFI3 1004 aaPredicted RBP18.74■□□□□ 0.59
PTPRN-206ENST00000442029 HOXA10P31260 410 aaPredicted RBP18.74■□□□□ 0.59
PTPRN-206ENST00000442029 TCIRG1Q13488 830 aa18.74■□□□□ 0.59
PTPRN-206ENST00000442029 TAF1P21675 1872 aa18.73■□□□□ 0.59
PTPRN-206ENST00000442029 ANP32CO43423 234 aa18.73■□□□□ 0.59
PTPRN-206ENST00000442029 NLRP10Q86W26 655 aa18.73■□□□□ 0.59
PTPRN-206ENST00000442029 SYNE4Q8N205 404 aa18.73■□□□□ 0.59
PTPRN-206ENST00000442029 CRAMP1Q96RY5 1269 aa18.73■□□□□ 0.59
PTPRN-206ENST00000442029 HYPKQ9NX55 129 aa18.73■□□□□ 0.59
PTPRN-206ENST00000442029 CEP350Q5VT06 3117 aa18.73■□□□□ 0.59
PTPRN-206ENST00000442029 DDX60Q8IY21 1712 aaKnown RBP18.72■□□□□ 0.59
PTPRN-206ENST00000442029 PPEF1O14829 653 aaPredicted RBP18.72■□□□□ 0.59
PTPRN-206ENST00000442029 DDNO94850 711 aaPredicted RBP18.72■□□□□ 0.59
PTPRN-206ENST00000442029 ZNF853P0CG23 659 aa18.72■□□□□ 0.59
PTPRN-206ENST00000442029 IARSP41252 1262 aaKnown RBP18.72■□□□□ 0.59
PTPRN-206ENST00000442029 GRIPAP1Q4V328 841 aa18.72■□□□□ 0.59
PTPRN-206ENST00000442029 ANKRD13DQ6ZTN6 518 aa18.72■□□□□ 0.59
PTPRN-206ENST00000442029 PLBD2Q8NHP8 589 aa18.72■□□□□ 0.59
PTPRN-206ENST00000442029 TRMT112Q9UI30 125 aaKnown RBP18.72■□□□□ 0.59
PTPRN-206ENST00000442029 TCERG1O14776 1098 aaKnown RBP18.71■□□□□ 0.59
PTPRN-206ENST00000442029 SLC10A5Q5PT55 438 aa18.71■□□□□ 0.59
PTPRN-206ENST00000442029 JDP2Q8WYK2 163 aa18.71■□□□□ 0.59
PTPRN-206ENST00000442029 PSMD1Q99460 953 aa18.71■□□□□ 0.59
PTPRN-206ENST00000442029 SH3TC1Q8TE82 1336 aa18.71■□□□□ 0.59
PTPRN-206ENST00000442029 ELL2O00472 640 aaPredicted RBP18.7■□□□□ 0.58
PTPRN-206ENST00000442029 CCDC184Q52MB2 194 aa18.7■□□□□ 0.58
PTPRN-206ENST00000442029 C3orf67Q6ZVT6 689 aa18.7■□□□□ 0.58
PTPRN-206ENST00000442029 CHMP4AQ9BY43 222 aa18.7■□□□□ 0.58
PTPRN-206ENST00000442029 MRS2Q9HD23 443 aa18.7■□□□□ 0.58
PTPRN-206ENST00000442029 IQCA1LA6NCM1 817 aa18.69■□□□□ 0.58
PTPRN-206ENST00000442029 POTECB2RU33 542 aa18.69■□□□□ 0.58
PTPRN-206ENST00000442029 GOLGA2Q08379 1002 aa18.69■□□□□ 0.58
PTPRN-206ENST00000442029 CACNA1FO60840 1977 aa18.69■□□□□ 0.58
PTPRN-206ENST00000442029 HCLS1P14317 486 aaPredicted RBP18.68■□□□□ 0.58
PTPRN-206ENST00000442029 ABCC4O15439 1325 aa18.68■□□□□ 0.58
PTPRN-206ENST00000442029 SNED1Q8TER0 1413 aa18.67■□□□□ 0.58
PTPRN-206ENST00000442029 DDX46Q7L014 1031 aaKnown RBP18.67■□□□□ 0.58
PTPRN-206ENST00000442029 RIC3Q7Z5B4 369 aa18.67■□□□□ 0.58
PTPRN-206ENST00000442029 ZNF541Q9H0D2 1346 aa18.67■□□□□ 0.58
PTPRN-206ENST00000442029 ATP5J2-PTCD1G3V325 749 aa18.66■□□□□ 0.58
PTPRN-206ENST00000442029 EIF6P56537 245 aaKnown RBP18.66■□□□□ 0.58
PTPRN-206ENST00000442029 LARGE2Q8N3Y3 721 aa18.66■□□□□ 0.58
PTPRN-206ENST00000442029 ZNF428Q96B54 188 aa18.66■□□□□ 0.58
PTPRN-206ENST00000442029 BBOX1O75936 387 aa18.65■□□□□ 0.58
PTPRN-206ENST00000442029 HTRA3P83110 453 aa18.65■□□□□ 0.58
PTPRN-206ENST00000442029 CCDC30Q5VVM6 783 aa18.65■□□□□ 0.58
PTPRN-206ENST00000442029 L3MBTL3Q96JM7 780 aaPredicted RBP18.65■□□□□ 0.58
PTPRN-206ENST00000442029 ISCA1Q9BUE6 129 aa18.65■□□□□ 0.58
PTPRN-206ENST00000442029 ATP6V0A2Q9Y487 856 aa18.65■□□□□ 0.58
PTPRN-206ENST00000442029 FZD9O00144 591 aa18.64■□□□□ 0.57
PTPRN-206ENST00000442029 CCDC27Q2M243 656 aa18.64■□□□□ 0.57
PTPRN-206ENST00000442029 CHADLQ6NUI6 762 aa18.64■□□□□ 0.57
PTPRN-206ENST00000442029 NIM1KQ8IY84 436 aa18.64■□□□□ 0.57
PTPRN-206ENST00000442029 C8orf58Q8NAV2 365 aa18.64■□□□□ 0.57
PTPRN-206ENST00000442029 SUPT20HQ8NEM7 779 aa18.64■□□□□ 0.57
PTPRN-206ENST00000442029 PHAXQ9H814 394 aaKnown RBP18.64■□□□□ 0.57
PTPRN-206ENST00000442029 HACL1Q9UJ83 578 aa18.64■□□□□ 0.57
PTPRN-206ENST00000442029 MYH3P11055 1940 aa18.64■□□□□ 0.57
PTPRN-206ENST00000442029 PPIP5K2O43314 1243 aa18.63■□□□□ 0.57
PTPRN-206ENST00000442029 DDX58O95786 925 aaKnown RBP18.63■□□□□ 0.57
PTPRN-206ENST00000442029 GRAPQ13588 217 aa18.63■□□□□ 0.57
PTPRN-206ENST00000442029 GPC2Q8N158 579 aa18.63■□□□□ 0.57
PTPRN-206ENST00000442029 GRAPLQ8TC17 118 aaPredicted RBP18.63■□□□□ 0.57
PTPRN-206ENST00000442029 FAM89AQ96GI7 184 aa18.63■□□□□ 0.57
PTPRN-206ENST00000442029 LRRC37AA6NMS7 1700 aa18.63■□□□□ 0.57
PTPRN-206ENST00000442029 EAPPQ56P03 285 aaPredicted RBP18.62■□□□□ 0.57
PTPRN-206ENST00000442029 RTL5Q5HYW3 569 aaPredicted RBP18.62■□□□□ 0.57
PTPRN-206ENST00000442029 DPP8Q6V1X1 898 aaPredicted RBP18.62■□□□□ 0.57
PTPRN-206ENST00000442029 WWC1Q8IX03 1113 aa18.62■□□□□ 0.57
PTPRN-206ENST00000442029 SP8Q8IXZ3 490 aa18.62■□□□□ 0.57
PTPRN-206ENST00000442029 DNAJC5GQ8N7S2 189 aa18.62■□□□□ 0.57
PTPRN-206ENST00000442029 TSR2Q969E8 191 aaKnown RBP18.62■□□□□ 0.57
PTPRN-206ENST00000442029 KLRG1Q96E93 195 aa18.62■□□□□ 0.57
PTPRN-206ENST00000442029 TAF1DQ9H5J8 278 aaPredicted RBP18.62■□□□□ 0.57
PTPRN-206ENST00000442029 GJA3Q9Y6H8 435 aa18.62■□□□□ 0.57
PTPRN-206ENST00000442029 COL4A5P29400 1685 aa18.61■□□□□ 0.57
PTPRN-206ENST00000442029 HSP90B1P14625 803 aaKnown RBP18.61■□□□□ 0.57
PTPRN-206ENST00000442029 LMOD1P29536 600 aaPredicted RBP18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms