RNA–Protein interactions for RNA: ENST00000439008.1

LINC00399-201, long intergenic non-protein coding RNA 399, humanhuman

TSL 2 BASIC

Gene LINC00399, Length 414 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00399-201ENST00000439008 GOLGA2Q08379 1002 aa17.12■□□□□ 0.33
LINC00399-201ENST00000439008 PARP10Q53GL7 1025 aa17.11■□□□□ 0.33
LINC00399-201ENST00000439008 NYXQ9GZU5 481 aa17.11■□□□□ 0.33
LINC00399-201ENST00000439008 ADCY9O60503 1353 aa17.11■□□□□ 0.33
LINC00399-201ENST00000439008 DDX60Q8IY21 1712 aaKnown RBP17.1■□□□□ 0.33
LINC00399-201ENST00000439008 CACNA1FO60840 1977 aa17.1■□□□□ 0.33
LINC00399-201ENST00000439008 SLC4A2P04920 1241 aa17.1■□□□□ 0.33
LINC00399-201ENST00000439008 SLFN5Q08AF3 891 aa17.1■□□□□ 0.33
LINC00399-201ENST00000439008 CRY2Q49AN0 593 aa17.1■□□□□ 0.33
LINC00399-201ENST00000439008 STYK1Q6J9G0 422 aa17.1■□□□□ 0.33
LINC00399-201ENST00000439008 ZNF784Q8NCA9 323 aaPredicted RBP17.1■□□□□ 0.33
LINC00399-201ENST00000439008 MASTLQ96GX5 879 aa17.1■□□□□ 0.33
LINC00399-201ENST00000439008 UTP14AQ9BVJ6 771 aaKnown RBP17.1■□□□□ 0.33
LINC00399-201ENST00000439008 ZNF219Q9P2Y4 722 aaPredicted RBP17.1■□□□□ 0.33
LINC00399-201ENST00000439008 RIC1Q4ADV7 1423 aa17.1■□□□□ 0.33
LINC00399-201ENST00000439008 TAF1P21675 1872 aa17.1■□□□□ 0.33
LINC00399-201ENST00000439008 C21orf2O43822 256 aa17.09■□□□□ 0.33
LINC00399-201ENST00000439008 HCLS1P14317 486 aaPredicted RBP17.09■□□□□ 0.33
LINC00399-201ENST00000439008 GTF2E1P29083 439 aaPredicted RBP17.09■□□□□ 0.33
LINC00399-201ENST00000439008 RASSF7Q02833 373 aa17.09■□□□□ 0.33
LINC00399-201ENST00000439008 HSP90AB3PQ58FF7 597 aa17.09■□□□□ 0.33
LINC00399-201ENST00000439008 SLC10A5Q5PT55 438 aa17.09■□□□□ 0.33
LINC00399-201ENST00000439008 PRPF40BQ6NWY9 871 aaKnown RBP17.09■□□□□ 0.33
LINC00399-201ENST00000439008 OLFM4Q6UX06 510 aa17.09■□□□□ 0.33
LINC00399-201ENST00000439008 PPP1R42Q7Z4L9 355 aa17.09■□□□□ 0.33
LINC00399-201ENST00000439008 RIC3Q7Z5B4 369 aa17.09■□□□□ 0.33
LINC00399-201ENST00000439008 C7orf43Q8WVR3 580 aa17.09■□□□□ 0.33
LINC00399-201ENST00000439008 MYH16Q9H6N6 1097 aa17.09■□□□□ 0.33
LINC00399-201ENST00000439008 PDZRN3Q9UPQ7 1066 aa17.09■□□□□ 0.33
LINC00399-201ENST00000439008 FER1L6Q2WGJ9 1857 aa17.09■□□□□ 0.33
LINC00399-201ENST00000439008 CCDC88AQ3V6T2 1871 aa17.09■□□□□ 0.33
LINC00399-201ENST00000439008 PI4KAP2A4QPH2 592 aa17.08■□□□□ 0.32
LINC00399-201ENST00000439008 NFKBIEO00221 500 aa17.08■□□□□ 0.32
LINC00399-201ENST00000439008 NPR1P16066 1061 aa17.08■□□□□ 0.32
LINC00399-201ENST00000439008 TRIM28Q13263 835 aaKnown RBP17.08■□□□□ 0.32
LINC00399-201ENST00000439008 TRMT2AQ8IZ69 625 aaKnown RBP17.08■□□□□ 0.32
LINC00399-201ENST00000439008 PI4KAP1Q8N8J0 262 aa17.08■□□□□ 0.32
LINC00399-201ENST00000439008 MYD88Q99836 296 aa17.08■□□□□ 0.32
LINC00399-201ENST00000439008 MAP3K2Q9Y2U5 619 aa17.08■□□□□ 0.32
LINC00399-201ENST00000439008 COL4A1P02462 1669 aa17.07■□□□□ 0.32
LINC00399-201ENST00000439008 STK31Q9BXU1 1019 aa17.07■□□□□ 0.32
LINC00399-201ENST00000439008 TRMT112Q9UI30 125 aaKnown RBP17.07■□□□□ 0.32
LINC00399-201ENST00000439008 IGKV5-2P06315 115 aa17.06■□□□□ 0.32
LINC00399-201ENST00000439008 FLIIQ13045 1269 aa17.06■□□□□ 0.32
LINC00399-201ENST00000439008 RTL5Q5HYW3 569 aaPredicted RBP17.06■□□□□ 0.32
LINC00399-201ENST00000439008 KSR2Q6VAB6 950 aa17.06■□□□□ 0.32
LINC00399-201ENST00000439008 JARID2Q92833 1246 aaPredicted RBP17.06■□□□□ 0.32
LINC00399-201ENST00000439008 FAM89AQ96GI7 184 aa17.06■□□□□ 0.32
LINC00399-201ENST00000439008 METTL22Q9BUU2 404 aaPredicted RBP17.06■□□□□ 0.32
LINC00399-201ENST00000439008 E9PSI1 815 aa17.05■□□□□ 0.32
LINC00399-201ENST00000439008 HOXA10P31260 410 aaPredicted RBP17.05■□□□□ 0.32
LINC00399-201ENST00000439008 CNKSR1Q969H4 720 aa17.05■□□□□ 0.32
LINC00399-201ENST00000439008 SNED1Q8TER0 1413 aa17.04■□□□□ 0.32
LINC00399-201ENST00000439008 SH3TC1Q8TE82 1336 aa17.04■□□□□ 0.32
LINC00399-201ENST00000439008 C9orf131Q5VYM1 1079 aa17.04■□□□□ 0.32
LINC00399-201ENST00000439008 RNF123Q5XPI4 1314 aa17.03■□□□□ 0.32
LINC00399-201ENST00000439008 CWF19L2Q2TBE0 894 aaKnown RBP17.03■□□□□ 0.32
LINC00399-201ENST00000439008 CHMP4AQ9BY43 222 aa17.03■□□□□ 0.32
LINC00399-201ENST00000439008 F6X3S4 739 aa17.02■□□□□ 0.32
LINC00399-201ENST00000439008 DDX58O95786 925 aaKnown RBP17.02■□□□□ 0.32
LINC00399-201ENST00000439008 NLRP3Q96P20 1036 aa17.02■□□□□ 0.32
LINC00399-201ENST00000439008 CCDC191Q8NCU4 936 aa17.01■□□□□ 0.31
LINC00399-201ENST00000439008 CRAMP1Q96RY5 1269 aa17.01■□□□□ 0.31
LINC00399-201ENST00000439008 RNF181Q9P0P0 153 aa17.01■□□□□ 0.31
LINC00399-201ENST00000439008 DICER1Q9UPY3 1922 aaKnown RBP17■□□□□ 0.31
LINC00399-201ENST00000439008 NEURL1BA8MQ27 555 aa17■□□□□ 0.31
LINC00399-201ENST00000439008 IRS4O14654 1257 aaPredicted RBP17■□□□□ 0.31
LINC00399-201ENST00000439008 FKBP5Q13451 457 aaPredicted RBP17■□□□□ 0.31
LINC00399-201ENST00000439008 MRPL50Q8N5N7 158 aaKnown RBP17■□□□□ 0.31
LINC00399-201ENST00000439008 ZBTB38Q8NAP3 1195 aaPredicted RBP17■□□□□ 0.31
LINC00399-201ENST00000439008 RPGRQ92834 1020 aaKnown RBP17■□□□□ 0.31
LINC00399-201ENST00000439008 ABCC4O15439 1325 aa16.99■□□□□ 0.31
LINC00399-201ENST00000439008 PCCAP05165 728 aaPredicted RBP16.99■□□□□ 0.31
LINC00399-201ENST00000439008 ALDH1B1P30837 517 aa16.99■□□□□ 0.31
LINC00399-201ENST00000439008 ZNF526Q8TF50 670 aaPredicted RBP16.99■□□□□ 0.31
LINC00399-201ENST00000439008 DNAAF4Q8WXU2 420 aa16.99■□□□□ 0.31
LINC00399-201ENST00000439008 SSH1Q8WYL5 1049 aa16.99■□□□□ 0.31
LINC00399-201ENST00000439008 CWC25Q9NXE8 425 aaPredicted RBP16.99■□□□□ 0.31
LINC00399-201ENST00000439008 LMNB1P20700 586 aa16.98■□□□□ 0.31
LINC00399-201ENST00000439008 SF3B3Q15393 1217 aaKnown RBP16.98■□□□□ 0.31
LINC00399-201ENST00000439008 RBM17Q96I25 401 aaKnown RBP16.98■□□□□ 0.31
LINC00399-201ENST00000439008 BCL2L13Q9BXK5 485 aa16.98■□□□□ 0.31
LINC00399-201ENST00000439008 TIAM2Q8IVF5 1701 aa16.98■□□□□ 0.31
LINC00399-201ENST00000439008 LTBP3Q9NS15 1303 aa16.97■□□□□ 0.31
LINC00399-201ENST00000439008 CASP7P55210 303 aa16.97■□□□□ 0.31
LINC00399-201ENST00000439008 HNRNPUQ00839 825 aaKnown RBP eCLIP16.97■□□□□ 0.31
LINC00399-201ENST00000439008 CCDC93Q567U6 631 aa16.97■□□□□ 0.31
LINC00399-201ENST00000439008 COL4A5P29400 1685 aa16.97■□□□□ 0.31
LINC00399-201ENST00000439008 H7C1W4 665 aa16.96■□□□□ 0.31
LINC00399-201ENST00000439008 GCKRQ14397 625 aa16.96■□□□□ 0.31
LINC00399-201ENST00000439008 BEND3Q5T5X7 828 aa16.96■□□□□ 0.31
LINC00399-201ENST00000439008 PPEF1O14829 653 aaPredicted RBP16.95■□□□□ 0.3
LINC00399-201ENST00000439008 CELF1Q92879 486 aaKnown RBP16.95■□□□□ 0.3
LINC00399-201ENST00000439008 TAOK3Q9H2K8 898 aa16.95■□□□□ 0.3
LINC00399-201ENST00000439008 SEC31BQ9NQW1 1179 aa16.95■□□□□ 0.3
LINC00399-201ENST00000439008 ZNF277Q9NRM2 450 aaPredicted RBP16.95■□□□□ 0.3
LINC00399-201ENST00000439008 CDHR2Q9BYE9 1310 aa16.95■□□□□ 0.3
LINC00399-201ENST00000439008 MYH3P11055 1940 aa16.94■□□□□ 0.3
LINC00399-201ENST00000439008 LRRC37AA6NMS7 1700 aa16.94■□□□□ 0.3
LINC00399-201ENST00000439008 FKBP4Q02790 459 aaKnown RBP eCLIP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms