RNA–Protein interactions for RNA: ENST00000430200.1

HDAC4-202, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 578 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-202ENST00000430200 POTEJP0CG39 1038 aa15.46■□□□□ 0.07
HDAC4-202ENST00000430200 CCDC93Q567U6 631 aa15.46■□□□□ 0.07
HDAC4-202ENST00000430200 SYNE4Q8N205 404 aa15.46■□□□□ 0.07
HDAC4-202ENST00000430200 DNAJC5GQ8N7S2 189 aa15.46■□□□□ 0.07
HDAC4-202ENST00000430200 XAGE3Q8WTP9 111 aa15.46■□□□□ 0.07
HDAC4-202ENST00000430200 ZNF277Q9NRM2 450 aaPredicted RBP15.46■□□□□ 0.07
HDAC4-202ENST00000430200 BABAM1Q9NWV8 329 aa15.46■□□□□ 0.07
HDAC4-202ENST00000430200 CHPF2Q9P2E5 772 aa15.46■□□□□ 0.07
HDAC4-202ENST00000430200 LAS1LQ9Y4W2 734 aaKnown RBP15.45■□□□□ 0.06
HDAC4-202ENST00000430200 MYH3P11055 1940 aa15.45■□□□□ 0.06
HDAC4-202ENST00000430200 DDNO94850 711 aaPredicted RBP15.44■□□□□ 0.06
HDAC4-202ENST00000430200 FKBP4Q02790 459 aaKnown RBP eCLIP15.44■□□□□ 0.06
HDAC4-202ENST00000430200 COPS6Q7L5N1 327 aa15.44■□□□□ 0.06
HDAC4-202ENST00000430200 MBIPQ9NS73 344 aa15.44■□□□□ 0.06
HDAC4-202ENST00000430200 APAF1O14727 1248 aa15.43■□□□□ 0.06
HDAC4-202ENST00000430200 ZNF853P0CG23 659 aa15.43■□□□□ 0.06
HDAC4-202ENST00000430200 APLP1P51693 650 aa15.43■□□□□ 0.06
HDAC4-202ENST00000430200 AIMP1Q12904 312 aaKnown RBP15.43■□□□□ 0.06
HDAC4-202ENST00000430200 NYXQ9GZU5 481 aa15.43■□□□□ 0.06
HDAC4-202ENST00000430200 ZNF646O15015 1829 aaPredicted RBP15.43■□□□□ 0.06
HDAC4-202ENST00000430200 HOXA10P31260 410 aaPredicted RBP15.42■□□□□ 0.06
HDAC4-202ENST00000430200 FSTL1Q12841 308 aa15.42■□□□□ 0.06
HDAC4-202ENST00000430200 NLRP10Q86W26 655 aa15.42■□□□□ 0.06
HDAC4-202ENST00000430200 C16orf71Q8IYS4 520 aaPredicted RBP15.42■□□□□ 0.06
HDAC4-202ENST00000430200 DDX21Q9NR30 783 aaKnown RBP eCLIP15.42■□□□□ 0.06
HDAC4-202ENST00000430200 ABCC4O15439 1325 aa15.42■□□□□ 0.06
HDAC4-202ENST00000430200 VEGFAP15692 232 aaPredicted RBP15.41■□□□□ 0.06
HDAC4-202ENST00000430200 GTF2E1P29083 439 aaPredicted RBP15.41■□□□□ 0.06
HDAC4-202ENST00000430200 SOGA3Q5TF21 947 aa15.41■□□□□ 0.06
HDAC4-202ENST00000430200 HDGFL1Q5TGJ6 251 aa15.41■□□□□ 0.06
HDAC4-202ENST00000430200 SCN9AQ15858 1988 aa15.4■□□□□ 0.06
HDAC4-202ENST00000430200 A0A1B0GUL6 1792 aa15.4■□□□□ 0.06
HDAC4-202ENST00000430200 SMC1BQ8NDV3 1235 aa15.4■□□□□ 0.06
HDAC4-202ENST00000430200 CFAP44Q96MT7 982 aa15.4■□□□□ 0.06
HDAC4-202ENST00000430200 PSME4Q14997 1843 aa15.4■□□□□ 0.06
HDAC4-202ENST00000430200 TCERG1O14776 1098 aaKnown RBP15.39■□□□□ 0.05
HDAC4-202ENST00000430200 HCLS1P14317 486 aaPredicted RBP15.39■□□□□ 0.05
HDAC4-202ENST00000430200 IARSP41252 1262 aaKnown RBP15.39■□□□□ 0.05
HDAC4-202ENST00000430200 PARP10Q53GL7 1025 aa15.39■□□□□ 0.05
HDAC4-202ENST00000430200 DUSP27Q5VZP5 1158 aa15.39■□□□□ 0.05
HDAC4-202ENST00000430200 RPGRQ92834 1020 aaKnown RBP15.39■□□□□ 0.05
HDAC4-202ENST00000430200 TRPM7Q96QT4 1865 aa15.38■□□□□ 0.05
HDAC4-202ENST00000430200 PPEF1O14829 653 aaPredicted RBP15.38■□□□□ 0.05
HDAC4-202ENST00000430200 L3MBTL3Q96JM7 780 aaPredicted RBP15.38■□□□□ 0.05
HDAC4-202ENST00000430200 UTP14AQ9BVJ6 771 aaKnown RBP15.38■□□□□ 0.05
HDAC4-202ENST00000430200 CACNA1FO60840 1977 aa15.37■□□□□ 0.05
HDAC4-202ENST00000430200 HOXB7P09629 217 aa15.37■□□□□ 0.05
HDAC4-202ENST00000430200 ALDH1B1P30837 517 aa15.37■□□□□ 0.05
HDAC4-202ENST00000430200 TCIRG1Q13488 830 aa15.37■□□□□ 0.05
HDAC4-202ENST00000430200 SLC10A5Q5PT55 438 aa15.37■□□□□ 0.05
HDAC4-202ENST00000430200 PPP1R42Q7Z4L9 355 aa15.37■□□□□ 0.05
HDAC4-202ENST00000430200 C8orf58Q8NAV2 365 aa15.37■□□□□ 0.05
HDAC4-202ENST00000430200 CRAMP1Q96RY5 1269 aa15.37■□□□□ 0.05
HDAC4-202ENST00000430200 PSMD1Q99460 953 aa15.37■□□□□ 0.05
HDAC4-202ENST00000430200 RNF123Q5XPI4 1314 aa15.37■□□□□ 0.05
HDAC4-202ENST00000430200 ATP5J2-PTCD1G3V325 749 aa15.36■□□□□ 0.05
HDAC4-202ENST00000430200 FZD9O00144 591 aa15.36■□□□□ 0.05
HDAC4-202ENST00000430200 RTKN2Q8IZC4 609 aa15.36■□□□□ 0.05
HDAC4-202ENST00000430200 ISCA1Q9BUE6 129 aa15.36■□□□□ 0.05
HDAC4-202ENST00000430200 PHAXQ9H814 394 aaKnown RBP15.36■□□□□ 0.05
HDAC4-202ENST00000430200 IFT57Q9NWB7 429 aa15.36■□□□□ 0.05
HDAC4-202ENST00000430200 ELL2O00472 640 aaPredicted RBP15.35■□□□□ 0.05
HDAC4-202ENST00000430200 DPY19L2Q6NUT2 758 aa15.35■□□□□ 0.05
HDAC4-202ENST00000430200 TSPYL6Q8N831 410 aa15.35■□□□□ 0.05
HDAC4-202ENST00000430200 PLBD2Q8NHP8 589 aa15.35■□□□□ 0.05
HDAC4-202ENST00000430200 TSR2Q969E8 191 aaKnown RBP15.35■□□□□ 0.05
HDAC4-202ENST00000430200 KLRG1Q96E93 195 aa15.35■□□□□ 0.05
HDAC4-202ENST00000430200 TAF1DQ9H5J8 278 aaPredicted RBP15.35■□□□□ 0.05
HDAC4-202ENST00000430200 THSD7BQ9C0I4 1608 aa15.35■□□□□ 0.05
HDAC4-202ENST00000430200 RBM17Q96I25 401 aaKnown RBP15.34■□□□□ 0.05
HDAC4-202ENST00000430200 DBF4Q9UBU7 674 aaPredicted RBP15.34■□□□□ 0.05
HDAC4-202ENST00000430200 SH3TC1Q8TE82 1336 aa15.34■□□□□ 0.05
HDAC4-202ENST00000430200 HSP90AB3PQ58FF7 597 aa15.33■□□□□ 0.04
HDAC4-202ENST00000430200 FAM89AQ96GI7 184 aa15.33■□□□□ 0.04
HDAC4-202ENST00000430200 NLRP3Q96P20 1036 aa15.33■□□□□ 0.04
HDAC4-202ENST00000430200 TRMT112Q9UI30 125 aaKnown RBP15.33■□□□□ 0.04
HDAC4-202ENST00000430200 ATP6V0A2Q9Y487 856 aa15.33■□□□□ 0.04
HDAC4-202ENST00000430200 AOC3Q16853 763 aa15.32■□□□□ 0.04
HDAC4-202ENST00000430200 RTL5Q5HYW3 569 aaPredicted RBP15.32■□□□□ 0.04
HDAC4-202ENST00000430200 CHADLQ6NUI6 762 aa15.32■□□□□ 0.04
HDAC4-202ENST00000430200 ANKRD13DQ6ZTN6 518 aa15.32■□□□□ 0.04
HDAC4-202ENST00000430200 JMYQ8N9B5 988 aa15.32■□□□□ 0.04
HDAC4-202ENST00000430200 PASKQ96RG2 1323 aa15.32■□□□□ 0.04
HDAC4-202ENST00000430200 SCNN1DP51172 638 aa15.31■□□□□ 0.04
HDAC4-202ENST00000430200 GNAI1P63096 354 aa15.31■□□□□ 0.04
HDAC4-202ENST00000430200 GRAPQ13588 217 aa15.3■□□□□ 0.04
HDAC4-202ENST00000430200 CC2D2BQ6DHV5 1058 aa15.3■□□□□ 0.04
HDAC4-202ENST00000430200 GPC2Q8N158 579 aa15.3■□□□□ 0.04
HDAC4-202ENST00000430200 GRAPLQ8TC17 118 aaPredicted RBP15.3■□□□□ 0.04
HDAC4-202ENST00000430200 CELF1Q92879 486 aaKnown RBP15.3■□□□□ 0.04
HDAC4-202ENST00000430200 HYPKQ9NX55 129 aa15.3■□□□□ 0.04
HDAC4-202ENST00000430200 POLR2AP24928 1970 aaKnown RBP15.29■□□□□ 0.04
HDAC4-202ENST00000430200 PPIP5K2O43314 1243 aa15.29■□□□□ 0.04
HDAC4-202ENST00000430200 EPHX2P34913 555 aa15.29■□□□□ 0.04
HDAC4-202ENST00000430200 LDHDQ86WU2 507 aa15.29■□□□□ 0.04
HDAC4-202ENST00000430200 LARGE2Q8N3Y3 721 aa15.29■□□□□ 0.04
HDAC4-202ENST00000430200 JARID2Q92833 1246 aaPredicted RBP15.29■□□□□ 0.04
HDAC4-202ENST00000430200 RTFDC1Q9BY42 306 aaPredicted RBP15.29■□□□□ 0.04
HDAC4-202ENST00000430200 HACL1Q9UJ83 578 aa15.29■□□□□ 0.04
HDAC4-202ENST00000430200 GJA3Q9Y6H8 435 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms