RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 SPATA32Q96LK8 384 aa12.65□□□□□ -0.38
USP54-204ENST00000422491 PPP6R1Q9UPN7 881 aa12.65□□□□□ -0.38
USP54-204ENST00000422491 TULP2O00295 520 aa12.64□□□□□ -0.39
USP54-204ENST00000422491 PDCP20941 246 aa12.64□□□□□ -0.39
USP54-204ENST00000422491 HSP90AB2PQ58FF8 381 aa12.64□□□□□ -0.39
USP54-204ENST00000422491 PGBD1Q96JS3 809 aa12.64□□□□□ -0.39
USP54-204ENST00000422491 KCND1Q9NSA2 647 aa12.64□□□□□ -0.39
USP54-204ENST00000422491 CCDC61Q9Y6R9 512 aa12.64□□□□□ -0.39
USP54-204ENST00000422491 CACNA1FO60840 1977 aa12.64□□□□□ -0.39
USP54-204ENST00000422491 GOLGA6L4A6NEF3 574 aa12.64□□□□□ -0.39
USP54-204ENST00000422491 VGLL3A8MV65 326 aa12.64□□□□□ -0.39
USP54-204ENST00000422491 CCZ1BP86790 482 aa12.64□□□□□ -0.39
USP54-204ENST00000422491 CCZ1P86791 482 aaPredicted RBP12.64□□□□□ -0.39
USP54-204ENST00000422491 TFIP11Q9UBB9 837 aaKnown RBP12.64□□□□□ -0.39
USP54-204ENST00000422491 NAP1L2Q9ULW6 460 aaPredicted RBP12.64□□□□□ -0.39
USP54-204ENST00000422491 RIMS1Q86UR5 1692 aaKnown RBP12.64□□□□□ -0.39
USP54-204ENST00000422491 MAP3K19Q56UN5 1328 aa12.64□□□□□ -0.39
USP54-204ENST00000422491 SKILP12757 684 aa12.64□□□□□ -0.39
USP54-204ENST00000422491 CALCOCO1Q9P1Z2 691 aa12.64□□□□□ -0.39
USP54-204ENST00000422491 SLU7O95391 586 aaKnown RBP12.63□□□□□ -0.39
USP54-204ENST00000422491 COL9A3Q14050 684 aaPredicted RBP12.63□□□□□ -0.39
USP54-204ENST00000422491 DDX54Q8TDD1 881 aaKnown RBP12.63□□□□□ -0.39
USP54-204ENST00000422491 RUFY2Q8WXA3 655 aa12.63□□□□□ -0.39
USP54-204ENST00000422491 OVOS2A0A0J9YW53 1432 aa12.63□□□□□ -0.39
USP54-204ENST00000422491 OVOS2Q6IE36 1432 aa12.63□□□□□ -0.39
USP54-204ENST00000422491 LRRC37A3O60309 1634 aa12.63□□□□□ -0.39
USP54-204ENST00000422491 TTC41PQ6P2S7 1318 aa12.63□□□□□ -0.39
USP54-204ENST00000422491 ERICH4A6NGS2 130 aa12.63□□□□□ -0.39
USP54-204ENST00000422491 CDK11BP21127 795 aaKnown RBP12.63□□□□□ -0.39
USP54-204ENST00000422491 CCAR2Q8N163 923 aaKnown RBP12.63□□□□□ -0.39
USP54-204ENST00000422491 GLRX3O76003 335 aaKnown RBP12.62□□□□□ -0.39
USP54-204ENST00000422491 RAPGEF3O95398 923 aa12.62□□□□□ -0.39
USP54-204ENST00000422491 H2AFXP16104 143 aaPredicted RBP12.62□□□□□ -0.39
USP54-204ENST00000422491 CCDC69A6NI79 296 aa12.62□□□□□ -0.39
USP54-204ENST00000422491 CAPN2P17655 700 aa12.62□□□□□ -0.39
USP54-204ENST00000422491 CYP2C19P33261 490 aa12.62□□□□□ -0.39
USP54-204ENST00000422491 LARP1Q6PKG0 1096 aaKnown RBP12.62□□□□□ -0.39
USP54-204ENST00000422491 C11orf57Q6ZUT1 292 aaPredicted RBP12.62□□□□□ -0.39
USP54-204ENST00000422491 NECTIN2Q92692 538 aa12.62□□□□□ -0.39
USP54-204ENST00000422491 ADCY9O60503 1353 aa12.62□□□□□ -0.39
USP54-204ENST00000422491 SRGAP3O43295 1099 aa12.61□□□□□ -0.39
USP54-204ENST00000422491 FBXO31Q5XUX0 539 aaPredicted RBP12.61□□□□□ -0.39
USP54-204ENST00000422491 BICD2Q8TD16 824 aa12.61□□□□□ -0.39
USP54-204ENST00000422491 IPO4Q8TEX9 1081 aaKnown RBP12.61□□□□□ -0.39
USP54-204ENST00000422491 NALCNQ8IZF0 1738 aa12.61□□□□□ -0.39
USP54-204ENST00000422491 GOLGA6L19H0YKK7 550 aa12.61□□□□□ -0.39
USP54-204ENST00000422491 GIGYF1O75420 1035 aaPredicted RBP12.61□□□□□ -0.39
USP54-204ENST00000422491 ZKSCAN1P17029 563 aaPredicted RBP12.61□□□□□ -0.39
USP54-204ENST00000422491 RNF20Q5VTR2 975 aa12.61□□□□□ -0.39
USP54-204ENST00000422491 CREB3L3Q68CJ9 461 aa12.61□□□□□ -0.39
USP54-204ENST00000422491 L2HGDHQ9H9P8 463 aa12.61□□□□□ -0.39
USP54-204ENST00000422491 TRMT1Q9NXH9 659 aaKnown RBP12.61□□□□□ -0.39
USP54-204ENST00000422491 RBM8AQ9Y5S9 174 aaKnown RBP12.61□□□□□ -0.39
USP54-204ENST00000422491 USP16Q9Y5T5 823 aa12.61□□□□□ -0.39
USP54-204ENST00000422491 FHOD1Q9Y613 1164 aa12.6□□□□□ -0.39
USP54-204ENST00000422491 BMS1Q14692 1282 aaKnown RBP12.6□□□□□ -0.39
USP54-204ENST00000422491 DNAJC2Q99543 621 aaKnown RBP12.6□□□□□ -0.39
USP54-204ENST00000422491 NOL10Q9BSC4 688 aaKnown RBP12.6□□□□□ -0.39
USP54-204ENST00000422491 KDRP35968 1356 aa12.6□□□□□ -0.39
USP54-204ENST00000422491 KIF2AO00139 706 aaPredicted RBP12.59□□□□□ -0.39
USP54-204ENST00000422491 MAP4K1Q92918 833 aa12.59□□□□□ -0.39
USP54-204ENST00000422491 PRR36Q9H6K5 1346 aa12.59□□□□□ -0.39
USP54-204ENST00000422491 RESTQ13127 1097 aa12.58□□□□□ -0.39
USP54-204ENST00000422491 STX1AQ16623 288 aa12.58□□□□□ -0.39
USP54-204ENST00000422491 CCDC93Q567U6 631 aa12.58□□□□□ -0.39
USP54-204ENST00000422491 FILIP1Q7Z7B0 1213 aa12.58□□□□□ -0.39
USP54-204ENST00000422491 DHX40Q8IX18 779 aaKnown RBP12.58□□□□□ -0.39
USP54-204ENST00000422491 ALDH8A1Q9H2A2 487 aaPredicted RBP12.58□□□□□ -0.39
USP54-204ENST00000422491 USP31Q70CQ4 1352 aa12.58□□□□□ -0.4
USP54-204ENST00000422491 SLC27A2O14975 620 aa12.58□□□□□ -0.4
USP54-204ENST00000422491 NBPF7P0C2Y1 421 aaPredicted RBP12.58□□□□□ -0.4
USP54-204ENST00000422491 PSMA5P28066 241 aa12.58□□□□□ -0.4
USP54-204ENST00000422491 TOB2Q14106 344 aaPredicted RBP12.58□□□□□ -0.4
USP54-204ENST00000422491 ANKRD1Q15327 319 aa12.58□□□□□ -0.4
USP54-204ENST00000422491 ERCC6LQ2NKX8 1250 aa12.58□□□□□ -0.4
USP54-204ENST00000422491 HSP90AB4PQ58FF6 505 aa12.58□□□□□ -0.4
USP54-204ENST00000422491 NRXN3Q9Y4C0 1643 aa12.58□□□□□ -0.4
USP54-204ENST00000422491 NPHP4O75161 1426 aaPredicted RBP12.58□□□□□ -0.4
USP54-204ENST00000422491 CLCN6P51797 869 aa12.58□□□□□ -0.4
USP54-204ENST00000422491 LRRN4CLQ8ND94 238 aa12.58□□□□□ -0.4
USP54-204ENST00000422491 TCEANC2Q96MN5 208 aa12.58□□□□□ -0.4
USP54-204ENST00000422491 PHAXQ9H814 394 aaKnown RBP12.58□□□□□ -0.4
USP54-204ENST00000422491 STAG3Q9UJ98 1225 aa12.58□□□□□ -0.4
USP54-204ENST00000422491 A2ML1A8K2U0 1454 aa12.57□□□□□ -0.4
USP54-204ENST00000422491 HNRNPH2P55795 449 aaKnown RBP12.57□□□□□ -0.4
USP54-204ENST00000422491 GTF3C6Q969F1 213 aa12.57□□□□□ -0.4
USP54-204ENST00000422491 SNRKQ9NRH2 765 aa12.57□□□□□ -0.4
USP54-204ENST00000422491 ECHDC1Q9NTX5 307 aa12.57□□□□□ -0.4
USP54-204ENST00000422491 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.57□□□□□ -0.4
USP54-204ENST00000422491 FMN2Q9NZ56 1722 aa12.57□□□□□ -0.4
USP54-204ENST00000422491 METP08581 1390 aa12.57□□□□□ -0.4
USP54-204ENST00000422491 CEP170BQ9Y4F5 1589 aaPredicted RBP12.57□□□□□ -0.4
USP54-204ENST00000422491 NPHP1O15259 732 aa12.57□□□□□ -0.4
USP54-204ENST00000422491 HTATSF1O43719 755 aaKnown RBP12.57□□□□□ -0.4
USP54-204ENST00000422491 PNMA6AP0CW24 399 aaPredicted RBP12.57□□□□□ -0.4
USP54-204ENST00000422491 RPS6KB1P23443 525 aa12.57□□□□□ -0.4
USP54-204ENST00000422491 PLA2G4AP47712 749 aa12.57□□□□□ -0.4
USP54-204ENST00000422491 E4F1Q66K89 784 aaPredicted RBP12.57□□□□□ -0.4
USP54-204ENST00000422491 BLOC1S2Q6QNY1 142 aa12.57□□□□□ -0.4
USP54-204ENST00000422491 TXNDC2Q86VQ3 553 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms