RNA–Protein interactions for RNA: ENST00000417101.1

ACTB-203, Transcript of actin beta, humanhuman

TSL 4

Gene ACTB, Length 472 nt, Biotype protein coding, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-203ENST00000417101 TRIM35Q9UPQ4 493 aa28.52■■■□□ 2.16
ACTB-203ENST00000417101 LAS1LQ9Y4W2 734 aaKnown RBP28.52■■■□□ 2.16
ACTB-203ENST00000417101 PCNTO95613 3336 aa28.51■■■□□ 2.16
ACTB-203ENST00000417101 ZNF541Q9H0D2 1346 aa28.51■■■□□ 2.15
ACTB-203ENST00000417101 CHL1O00533 1208 aa28.51■■■□□ 2.15
ACTB-203ENST00000417101 POTEIP0CG38 1075 aa28.51■■■□□ 2.15
ACTB-203ENST00000417101 POTEJP0CG39 1038 aa28.51■■■□□ 2.15
ACTB-203ENST00000417101 IARSP41252 1262 aaKnown RBP28.51■■■□□ 2.15
ACTB-203ENST00000417101 KRT24Q2M2I5 525 aa28.51■■■□□ 2.15
ACTB-203ENST00000417101 JMYQ8N9B5 988 aa28.51■■■□□ 2.15
ACTB-203ENST00000417101 CHADLQ6NUI6 762 aa28.5■■■□□ 2.15
ACTB-203ENST00000417101 C3orf67Q6ZVT6 689 aa28.5■■■□□ 2.15
ACTB-203ENST00000417101 L3MBTL3Q96JM7 780 aaPredicted RBP28.5■■■□□ 2.15
ACTB-203ENST00000417101 IQCA1LA6NCM1 817 aa28.49■■■□□ 2.15
ACTB-203ENST00000417101 AIMP1Q12904 312 aaKnown RBP28.49■■■□□ 2.15
ACTB-203ENST00000417101 CC2D2BQ6DHV5 1058 aa28.49■■■□□ 2.15
ACTB-203ENST00000417101 COPS6Q7L5N1 327 aa28.49■■■□□ 2.15
ACTB-203ENST00000417101 XAGE3Q8WTP9 111 aa28.49■■■□□ 2.15
ACTB-203ENST00000417101 RBM17Q96I25 401 aaKnown RBP28.49■■■□□ 2.15
ACTB-203ENST00000417101 PSMD1Q99460 953 aa28.49■■■□□ 2.15
ACTB-203ENST00000417101 UTP14AQ9BVJ6 771 aaKnown RBP28.49■■■□□ 2.15
ACTB-203ENST00000417101 SNED1Q8TER0 1413 aa28.49■■■□□ 2.15
ACTB-203ENST00000417101 CRAMP1Q96RY5 1269 aa28.48■■■□□ 2.15
ACTB-203ENST00000417101 TCERG1O14776 1098 aaKnown RBP28.47■■■□□ 2.15
ACTB-203ENST00000417101 NLRP3Q96P20 1036 aa28.47■■■□□ 2.15
ACTB-203ENST00000417101 TAF1DQ9H5J8 278 aaPredicted RBP28.47■■■□□ 2.15
ACTB-203ENST00000417101 PRKRIP1Q9H875 184 aaPredicted RBP28.47■■■□□ 2.15
ACTB-203ENST00000417101 DDX21Q9NR30 783 aaKnown RBP eCLIP28.46■■■□□ 2.15
ACTB-203ENST00000417101 FZD9O00144 591 aa28.45■■■□□ 2.14
ACTB-203ENST00000417101 PPEF1O14829 653 aaPredicted RBP28.45■■■□□ 2.14
ACTB-203ENST00000417101 SLC51AQ86UW1 340 aa28.45■■■□□ 2.14
ACTB-203ENST00000417101 HSP90AB3PQ58FF7 597 aa28.44■■■□□ 2.14
ACTB-203ENST00000417101 SLC10A5Q5PT55 438 aa28.44■■■□□ 2.14
ACTB-203ENST00000417101 JDP2Q8WYK2 163 aa28.44■■■□□ 2.14
ACTB-203ENST00000417101 NLRP10Q86W26 655 aa28.43■■■□□ 2.14
ACTB-203ENST00000417101 LDHDQ86WU2 507 aa28.43■■■□□ 2.14
ACTB-203ENST00000417101 CHPF2Q9P2E5 772 aa28.43■■■□□ 2.14
ACTB-203ENST00000417101 GRIPAP1Q4V328 841 aa28.42■■■□□ 2.14
ACTB-203ENST00000417101 HACL1Q9UJ83 578 aa28.42■■■□□ 2.14
ACTB-203ENST00000417101 SCN4AP35499 1836 aa28.41■■■□□ 2.14
ACTB-203ENST00000417101 TCIRG1Q13488 830 aa28.41■■■□□ 2.14
ACTB-203ENST00000417101 EAPPQ56P03 285 aaPredicted RBP28.41■■■□□ 2.14
ACTB-203ENST00000417101 HDGFL1Q5TGJ6 251 aa28.41■■■□□ 2.14
ACTB-203ENST00000417101 RNF123Q5XPI4 1314 aa28.41■■■□□ 2.14
ACTB-203ENST00000417101 GPC2Q8N158 579 aa28.4■■■□□ 2.14
ACTB-203ENST00000417101 HCLS1P14317 486 aaPredicted RBP28.39■■■□□ 2.14
ACTB-203ENST00000417101 EPHX2P34913 555 aa28.39■■■□□ 2.14
ACTB-203ENST00000417101 LARGE2Q8N3Y3 721 aa28.39■■■□□ 2.14
ACTB-203ENST00000417101 CFAP44Q96MT7 982 aa28.39■■■□□ 2.14
ACTB-203ENST00000417101 TRMT112Q9UI30 125 aaKnown RBP28.39■■■□□ 2.14
ACTB-203ENST00000417101 COL4A5P29400 1685 aa28.38■■■□□ 2.13
ACTB-203ENST00000417101 HOXB7P09629 217 aa28.38■■■□□ 2.13
ACTB-203ENST00000417101 EIF6P56537 245 aaKnown RBP28.38■■■□□ 2.13
ACTB-203ENST00000417101 TMX4Q9H1E5 349 aaPredicted RBP28.38■■■□□ 2.13
ACTB-203ENST00000417101 ABCC4O15439 1325 aa28.38■■■□□ 2.13
ACTB-203ENST00000417101 CREBZFQ9NS37 354 aa28.37■■■□□ 2.13
ACTB-203ENST00000417101 CLEC11AQ9Y240 323 aa28.37■■■□□ 2.13
ACTB-203ENST00000417101 ATP6V0A2Q9Y487 856 aa28.37■■■□□ 2.13
ACTB-203ENST00000417101 GJA3Q9Y6H8 435 aa28.37■■■□□ 2.13
ACTB-203ENST00000417101 ZNF428Q96B54 188 aa28.36■■■□□ 2.13
ACTB-203ENST00000417101 DBF4Q9UBU7 674 aaPredicted RBP28.36■■■□□ 2.13
ACTB-203ENST00000417101 ANKRD36CQ5JPF3 1778 aa28.36■■■□□ 2.13
ACTB-203ENST00000417101 SH3TC1Q8TE82 1336 aa28.36■■■□□ 2.13
ACTB-203ENST00000417101 APAF1O14727 1248 aa28.35■■■□□ 2.13
ACTB-203ENST00000417101 DUSP27Q5VZP5 1158 aa28.35■■■□□ 2.13
ACTB-203ENST00000417101 MBIPQ9NS73 344 aa28.35■■■□□ 2.13
ACTB-203ENST00000417101 ANKRD13DQ6ZTN6 518 aa28.34■■■□□ 2.13
ACTB-203ENST00000417101 PNMA8AQ86V59 439 aaPredicted RBP28.34■■■□□ 2.13
ACTB-203ENST00000417101 PLBD2Q8NHP8 589 aa28.34■■■□□ 2.13
ACTB-203ENST00000417101 PASKQ96RG2 1323 aa28.34■■■□□ 2.13
ACTB-203ENST00000417101 PPIP5K2O43314 1243 aa28.33■■■□□ 2.13
ACTB-203ENST00000417101 BBOX1O75936 387 aa28.33■■■□□ 2.13
ACTB-203ENST00000417101 ITGBL1O95965 494 aaPredicted RBP28.32■■■□□ 2.12
ACTB-203ENST00000417101 DDX46Q7L014 1031 aaKnown RBP28.32■■■□□ 2.12
ACTB-203ENST00000417101 NIM1KQ8IY84 436 aa28.32■■■□□ 2.12
ACTB-203ENST00000417101 HYPKQ9NX55 129 aa28.32■■■□□ 2.12
ACTB-203ENST00000417101 MKRN1Q9UHC7 482 aaKnown RBP28.32■■■□□ 2.12
ACTB-203ENST00000417101 ZNF853P0CG23 659 aa28.31■■■□□ 2.12
ACTB-203ENST00000417101 AOC3Q16853 763 aa28.31■■■□□ 2.12
ACTB-203ENST00000417101 SP8Q8IXZ3 490 aa28.3■■■□□ 2.12
ACTB-203ENST00000417101 ATP5J2-PTCD1G3V325 749 aa28.29■■■□□ 2.12
ACTB-203ENST00000417101 HSPA1AP0DMV8 641 aaKnown RBP28.29■■■□□ 2.12
ACTB-203ENST00000417101 HSPA1BP0DMV9 641 aaKnown RBP28.29■■■□□ 2.12
ACTB-203ENST00000417101 LMOD1P29536 600 aaPredicted RBP28.29■■■□□ 2.12
ACTB-203ENST00000417101 GRAPQ13588 217 aa28.29■■■□□ 2.12
ACTB-203ENST00000417101 COL13A1Q5TAT6 717 aaPredicted RBP28.29■■■□□ 2.12
ACTB-203ENST00000417101 MAP1SQ66K74 1059 aaPredicted RBP28.29■■■□□ 2.12
ACTB-203ENST00000417101 DPP8Q6V1X1 898 aaPredicted RBP28.29■■■□□ 2.12
ACTB-203ENST00000417101 SUPT20HQ8NEM7 779 aa28.29■■■□□ 2.12
ACTB-203ENST00000417101 GRAPLQ8TC17 118 aaPredicted RBP28.29■■■□□ 2.12
ACTB-203ENST00000417101 ISCA1Q9BUE6 129 aa28.29■■■□□ 2.12
ACTB-203ENST00000417101 IFT57Q9NWB7 429 aa28.29■■■□□ 2.12
ACTB-203ENST00000417101 LAMB2P55268 1798 aa28.29■■■□□ 2.12
ACTB-203ENST00000417101 SCNN1DP51172 638 aa28.28■■■□□ 2.12
ACTB-203ENST00000417101 GNAI1P63096 354 aa28.28■■■□□ 2.12
ACTB-203ENST00000417101 CALD1Q05682 793 aaKnown RBP28.28■■■□□ 2.12
ACTB-203ENST00000417101 FAM89AQ96GI7 184 aa28.28■■■□□ 2.12
ACTB-203ENST00000417101 RTFDC1Q9BY42 306 aaPredicted RBP28.28■■■□□ 2.12
ACTB-203ENST00000417101 VPS33BQ9H267 617 aa28.28■■■□□ 2.12
ACTB-203ENST00000417101 ADAMTSL1Q8N6G6 1762 aa28.27■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms