RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 RTKN2Q8IZC4 609 aa17.13■□□□□ 0.33
LINC00339-202ENST00000416769 MAP3K15Q6ZN16 1313 aa17.13■□□□□ 0.33
LINC00339-202ENST00000416769 TMEM88BA6NKF7 163 aa17.12■□□□□ 0.33
LINC00339-202ENST00000416769 HTATSF1O43719 755 aaKnown RBP17.12■□□□□ 0.33
LINC00339-202ENST00000416769 PLEKHF1Q96S99 279 aa17.12■□□□□ 0.33
LINC00339-202ENST00000416769 GJA3Q9Y6H8 435 aa17.12■□□□□ 0.33
LINC00339-202ENST00000416769 ANXA1P04083 346 aa17.11■□□□□ 0.33
LINC00339-202ENST00000416769 CNTROBQ8N137 903 aa17.11■□□□□ 0.33
LINC00339-202ENST00000416769 EPS15P42566 896 aa17.1■□□□□ 0.33
LINC00339-202ENST00000416769 PROSER3Q2NL68 480 aa17.1■□□□□ 0.33
LINC00339-202ENST00000416769 ZNF428Q96B54 188 aa17.1■□□□□ 0.33
LINC00339-202ENST00000416769 RGL2O15211 777 aa17.09■□□□□ 0.33
LINC00339-202ENST00000416769 NTSR2O95665 410 aa17.09■□□□□ 0.33
LINC00339-202ENST00000416769 ALDH1B1P30837 517 aa17.09■□□□□ 0.33
LINC00339-202ENST00000416769 SCNN1DP51172 638 aa17.09■□□□□ 0.33
LINC00339-202ENST00000416769 LRP10Q7Z4F1 713 aa17.09■□□□□ 0.33
LINC00339-202ENST00000416769 GPC2Q8N158 579 aa17.09■□□□□ 0.33
LINC00339-202ENST00000416769 PSMD1Q99460 953 aa17.09■□□□□ 0.33
LINC00339-202ENST00000416769 RIC1Q4ADV7 1423 aa17.09■□□□□ 0.33
LINC00339-202ENST00000416769 ERVV-1B6SEH8 477 aa17.08■□□□□ 0.32
LINC00339-202ENST00000416769 TRAF5O00463 557 aa17.08■□□□□ 0.32
LINC00339-202ENST00000416769 LBX1P52954 281 aa17.08■□□□□ 0.32
LINC00339-202ENST00000416769 ZNF34Q8IZ26 560 aa17.08■□□□□ 0.32
LINC00339-202ENST00000416769 RPGRQ92834 1020 aaKnown RBP17.08■□□□□ 0.32
LINC00339-202ENST00000416769 WBP1LQ9NX94 342 aa17.08■□□□□ 0.32
LINC00339-202ENST00000416769 PPEF1O14829 653 aaPredicted RBP17.07■□□□□ 0.32
LINC00339-202ENST00000416769 HOXA10P31260 410 aaPredicted RBP17.07■□□□□ 0.32
LINC00339-202ENST00000416769 NFE2L2Q16236 605 aa17.07■□□□□ 0.32
LINC00339-202ENST00000416769 KIF6Q6ZMV9 814 aa17.07■□□□□ 0.32
LINC00339-202ENST00000416769 TAF1P21675 1872 aa17.07■□□□□ 0.32
LINC00339-202ENST00000416769 RASSF10A6NK89 507 aa17.06■□□□□ 0.32
LINC00339-202ENST00000416769 PDIA6Q15084 440 aa17.06■□□□□ 0.32
LINC00339-202ENST00000416769 LARGE2Q8N3Y3 721 aa17.06■□□□□ 0.32
LINC00339-202ENST00000416769 JDP2Q8WYK2 163 aa17.06■□□□□ 0.32
LINC00339-202ENST00000416769 NYXQ9GZU5 481 aa17.06■□□□□ 0.32
LINC00339-202ENST00000416769 LAMB2P55268 1798 aa17.06■□□□□ 0.32
LINC00339-202ENST00000416769 HSPA8P11142 646 aaKnown RBP17.05■□□□□ 0.32
LINC00339-202ENST00000416769 CTCFP49711 727 aaPredicted RBP17.05■□□□□ 0.32
LINC00339-202ENST00000416769 AOC3Q16853 763 aa17.05■□□□□ 0.32
LINC00339-202ENST00000416769 PNMA8AQ86V59 439 aaPredicted RBP17.05■□□□□ 0.32
LINC00339-202ENST00000416769 NECTIN2Q92692 538 aa17.05■□□□□ 0.32
LINC00339-202ENST00000416769 DDX21Q9NR30 783 aaKnown RBP eCLIP17.05■□□□□ 0.32
LINC00339-202ENST00000416769 ABT1Q9ULW3 272 aaKnown RBP17.05■□□□□ 0.32
LINC00339-202ENST00000416769 IBTKQ9P2D0 1353 aaPredicted RBP17.04■□□□□ 0.32
LINC00339-202ENST00000416769 WDR33Q9C0J8 1336 aaKnown RBP17.04■□□□□ 0.32
LINC00339-202ENST00000416769 EIF2S2P20042 333 aaKnown RBP17.04■□□□□ 0.32
LINC00339-202ENST00000416769 EIF6P56537 245 aaKnown RBP17.04■□□□□ 0.32
LINC00339-202ENST00000416769 GRM1Q13255 1194 aa17.04■□□□□ 0.32
LINC00339-202ENST00000416769 DEFB115Q30KQ5 88 aa17.04■□□□□ 0.32
LINC00339-202ENST00000416769 GIGYF2Q6Y7W6 1299 aaKnown RBP17.04■□□□□ 0.32
LINC00339-202ENST00000416769 PNISRQ8TF01 805 aaKnown RBP17.04■□□□□ 0.32
LINC00339-202ENST00000416769 AIDAQ96BJ3 306 aa17.04■□□□□ 0.32
LINC00339-202ENST00000416769 PRDM10Q9NQV6 1147 aa17.04■□□□□ 0.32
LINC00339-202ENST00000416769 ABCC4O15439 1325 aa17.03■□□□□ 0.32
LINC00339-202ENST00000416769 KRT24Q2M2I5 525 aa17.03■□□□□ 0.32
LINC00339-202ENST00000416769 CST9Q5W186 159 aa17.03■□□□□ 0.32
LINC00339-202ENST00000416769 CRAMP1Q96RY5 1269 aa17.03■□□□□ 0.32
LINC00339-202ENST00000416769 COL4A1P02462 1669 aa17.03■□□□□ 0.32
LINC00339-202ENST00000416769 SHTN1A0MZ66 631 aa17.02■□□□□ 0.32
LINC00339-202ENST00000416769 PPIP5K2O43314 1243 aa17.02■□□□□ 0.32
LINC00339-202ENST00000416769 CYP4F22Q6NT55 531 aa17.02■□□□□ 0.32
LINC00339-202ENST00000416769 RBM17Q96I25 401 aaKnown RBP17.02■□□□□ 0.32
LINC00339-202ENST00000416769 TSPYL4Q9UJ04 414 aa17.02■□□□□ 0.32
LINC00339-202ENST00000416769 TSKSQ9UJT2 592 aa17.02■□□□□ 0.32
LINC00339-202ENST00000416769 THSD7BQ9C0I4 1608 aa17.02■□□□□ 0.31
LINC00339-202ENST00000416769 TRPM7Q96QT4 1865 aa17.01■□□□□ 0.31
LINC00339-202ENST00000416769 HCLS1P14317 486 aaPredicted RBP17.01■□□□□ 0.31
LINC00339-202ENST00000416769 LMOD1P29536 600 aaPredicted RBP17.01■□□□□ 0.31
LINC00339-202ENST00000416769 CC2D2BQ6DHV5 1058 aa17.01■□□□□ 0.31
LINC00339-202ENST00000416769 PAXIP1Q6ZW49 1069 aaPredicted RBP17.01■□□□□ 0.31
LINC00339-202ENST00000416769 NIM1KQ8IY84 436 aa17.01■□□□□ 0.31
LINC00339-202ENST00000416769 ANKRD36CQ5JPF3 1778 aa17.01■□□□□ 0.31
LINC00339-202ENST00000416769 DLK2Q6UY11 383 aa17■□□□□ 0.31
LINC00339-202ENST00000416769 DUOX1Q9NRD9 1551 aa16.99■□□□□ 0.31
LINC00339-202ENST00000416769 AOC2O75106 756 aa16.99■□□□□ 0.31
LINC00339-202ENST00000416769 GMPSP49915 693 aaPredicted RBP16.99■□□□□ 0.31
LINC00339-202ENST00000416769 CXCL9Q07325 125 aa16.99■□□□□ 0.31
LINC00339-202ENST00000416769 AIMP1Q12904 312 aaKnown RBP16.99■□□□□ 0.31
LINC00339-202ENST00000416769 DDX10Q13206 875 aaKnown RBP16.99■□□□□ 0.31
LINC00339-202ENST00000416769 CAPNS2Q96L46 248 aa16.99■□□□□ 0.31
LINC00339-202ENST00000416769 UTP14AQ9BVJ6 771 aaKnown RBP16.99■□□□□ 0.31
LINC00339-202ENST00000416769 ATP6V0A2Q9Y487 856 aa16.99■□□□□ 0.31
LINC00339-202ENST00000416769 MAPK8IP3Q9UPT6 1336 aa16.98■□□□□ 0.31
LINC00339-202ENST00000416769 NEFMP07197 916 aa16.98■□□□□ 0.31
LINC00339-202ENST00000416769 XAGE3Q8WTP9 111 aa16.98■□□□□ 0.31
LINC00339-202ENST00000416769 GLIS2Q9BZE0 524 aaPredicted RBP16.98■□□□□ 0.31
LINC00339-202ENST00000416769 GPRC5DQ9NZD1 345 aa16.98■□□□□ 0.31
LINC00339-202ENST00000416769 ERBB4Q15303 1308 aa16.97■□□□□ 0.31
LINC00339-202ENST00000416769 RAD17O75943 681 aa16.97■□□□□ 0.31
LINC00339-202ENST00000416769 HIRAP54198 1017 aaPredicted RBP16.97■□□□□ 0.31
LINC00339-202ENST00000416769 RIPK4P57078 832 aa16.97■□□□□ 0.31
LINC00339-202ENST00000416769 SLC10A5Q5PT55 438 aa16.97■□□□□ 0.31
LINC00339-202ENST00000416769 COPS6Q7L5N1 327 aa16.97■□□□□ 0.31
LINC00339-202ENST00000416769 PPP1R42Q7Z4L9 355 aa16.97■□□□□ 0.31
LINC00339-202ENST00000416769 NLRP10Q86W26 655 aa16.97■□□□□ 0.31
LINC00339-202ENST00000416769 TRPM4Q8TD43 1214 aa16.97■□□□□ 0.31
LINC00339-202ENST00000416769 ABHD8Q96I13 439 aa16.97■□□□□ 0.31
LINC00339-202ENST00000416769 NLRP3Q96P20 1036 aa16.97■□□□□ 0.31
LINC00339-202ENST00000416769 YDJCA8MPS7 323 aa16.96■□□□□ 0.31
LINC00339-202ENST00000416769 PARP10Q53GL7 1025 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms