RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 BIN2Q9UBW5 565 aaPredicted RBP7.91□□□□□ -1.14
VPS54-204ENST00000416400 KCNH4Q9UQ05 1017 aa7.91□□□□□ -1.14
VPS54-204ENST00000416400 BCS1LQ9Y276 419 aa7.91□□□□□ -1.14
VPS54-204ENST00000416400 TNFRSF10BO14763 440 aa7.9□□□□□ -1.14
VPS54-204ENST00000416400 ICMTO60725 284 aa7.9□□□□□ -1.14
VPS54-204ENST00000416400 THBS1P07996 1170 aa7.9□□□□□ -1.14
VPS54-204ENST00000416400 BMP4P12644 408 aa7.9□□□□□ -1.14
VPS54-204ENST00000416400 MPSTP25325 297 aa7.9□□□□□ -1.14
VPS54-204ENST00000416400 TREML4Q6UXN2 200 aa7.9□□□□□ -1.14
VPS54-204ENST00000416400 ETFBKMTQ8IXQ9 262 aa7.9□□□□□ -1.14
VPS54-204ENST00000416400 PIK3R5Q8WYR1 880 aa7.9□□□□□ -1.14
VPS54-204ENST00000416400 KLRG1Q96E93 195 aa7.9□□□□□ -1.14
VPS54-204ENST00000416400 COL25A1Q9BXS0 654 aaPredicted RBP7.9□□□□□ -1.14
VPS54-204ENST00000416400 PRR12Q9ULL5 1215 aa7.9□□□□□ -1.14
VPS54-204ENST00000416400 ERBB4Q15303 1308 aa7.89□□□□□ -1.15
VPS54-204ENST00000416400 ZAP70P43403 619 aa7.89□□□□□ -1.15
VPS54-204ENST00000416400 UBAP2LQ14157 1087 aaKnown RBP7.89□□□□□ -1.15
VPS54-204ENST00000416400 GPR161Q8N6U8 529 aaKnown RBP7.89□□□□□ -1.15
VPS54-204ENST00000416400 MBIPQ9NS73 344 aa7.89□□□□□ -1.15
VPS54-204ENST00000416400 RPLP1P05386 114 aaKnown RBP7.88□□□□□ -1.15
VPS54-204ENST00000416400 CD33P20138 364 aa7.88□□□□□ -1.15
VPS54-204ENST00000416400 RGL4Q8IZJ4 473 aa7.88□□□□□ -1.15
VPS54-204ENST00000416400 CMTR1Q8N1G2 835 aaKnown RBP7.88□□□□□ -1.15
VPS54-204ENST00000416400 PNMA5Q96PV4 448 aa7.88□□□□□ -1.15
VPS54-204ENST00000416400 NDFIP2Q9NV92 336 aa7.88□□□□□ -1.15
VPS54-204ENST00000416400 DMGDHQ9UI17 866 aaKnown RBP7.88□□□□□ -1.15
VPS54-204ENST00000416400 FNDC3AQ9Y2H6 1198 aaKnown RBP7.88□□□□□ -1.15
VPS54-204ENST00000416400 EFSO43281 561 aa7.87□□□□□ -1.15
VPS54-204ENST00000416400 INPP5BP32019 993 aa7.87□□□□□ -1.15
VPS54-204ENST00000416400 MAP2K3P46734 347 aa7.87□□□□□ -1.15
VPS54-204ENST00000416400 EIF1AXP47813 144 aaKnown RBP7.87□□□□□ -1.15
VPS54-204ENST00000416400 SFSWAPQ12872 951 aaKnown RBP7.87□□□□□ -1.15
VPS54-204ENST00000416400 CNTNAP3BQ96NU0 1288 aa7.87□□□□□ -1.15
VPS54-204ENST00000416400 CNTNAP3Q9BZ76 1288 aa7.87□□□□□ -1.15
VPS54-204ENST00000416400 RTCBQ9Y3I0 505 aaKnown RBP7.87□□□□□ -1.15
VPS54-204ENST00000416400 GMPRP36959 345 aa7.86□□□□□ -1.15
VPS54-204ENST00000416400 KCNQ4P56696 695 aa7.86□□□□□ -1.15
VPS54-204ENST00000416400 DNM1Q05193 864 aaKnown RBP7.86□□□□□ -1.15
VPS54-204ENST00000416400 FAM182BQ5T319 152 aa7.86□□□□□ -1.15
VPS54-204ENST00000416400 GPR152Q8TDT2 470 aa7.86□□□□□ -1.15
VPS54-204ENST00000416400 BRPF3Q9ULD4 1205 aa7.86□□□□□ -1.15
VPS54-204ENST00000416400 AMOTL2Q9Y2J4 779 aa7.86□□□□□ -1.15
VPS54-204ENST00000416400 OPLAHO14841 1288 aa7.85□□□□□ -1.15
VPS54-204ENST00000416400 NPR3P17342 541 aa7.85□□□□□ -1.15
VPS54-204ENST00000416400 RBM25P49756 843 aaKnown RBP7.85□□□□□ -1.15
VPS54-204ENST00000416400 CTBSQ01459 385 aa7.85□□□□□ -1.15
VPS54-204ENST00000416400 SPEM2Q0P670 501 aa7.85□□□□□ -1.15
VPS54-204ENST00000416400 ATCAYQ86WG3 371 aa7.85□□□□□ -1.15
VPS54-204ENST00000416400 EDEM1Q92611 657 aa7.85□□□□□ -1.15
VPS54-204ENST00000416400 C11orf16Q9NQ32 467 aa7.85□□□□□ -1.15
VPS54-204ENST00000416400 ZBTB39O15060 712 aa7.84□□□□□ -1.15
VPS54-204ENST00000416400 NDUFB5O43674 189 aa7.84□□□□□ -1.15
VPS54-204ENST00000416400 MZF1P28698 734 aaPredicted RBP7.84□□□□□ -1.15
VPS54-204ENST00000416400 USP5P45974 858 aa7.84□□□□□ -1.15
VPS54-204ENST00000416400 SRSF11Q05519 484 aaKnown RBP7.84□□□□□ -1.15
VPS54-204ENST00000416400 CCINQ13939 588 aa7.84□□□□□ -1.15
VPS54-204ENST00000416400 GAS6Q14393 721 aa7.84□□□□□ -1.15
VPS54-204ENST00000416400 EFCC1Q9HA90 598 aa7.84□□□□□ -1.15
VPS54-204ENST00000416400 STRN4Q9NRL3 753 aa7.84□□□□□ -1.15
VPS54-204ENST00000416400 IGF1RP08069 1367 aa7.84□□□□□ -1.16
VPS54-204ENST00000416400 UBAP1LF5GYI3 381 aa7.83□□□□□ -1.16
VPS54-204ENST00000416400 XYLBO75191 536 aa7.83□□□□□ -1.16
VPS54-204ENST00000416400 ERCC3P19447 782 aa7.83□□□□□ -1.16
VPS54-204ENST00000416400 C8orf34Q49A92 452 aa7.83□□□□□ -1.16
VPS54-204ENST00000416400 RNFT1Q5M7Z0 435 aa7.83□□□□□ -1.16
VPS54-204ENST00000416400 TMC1Q8TDI8 760 aa7.83□□□□□ -1.16
VPS54-204ENST00000416400 BHMTQ93088 406 aa7.83□□□□□ -1.16
VPS54-204ENST00000416400 USP20Q9Y2K6 914 aa7.83□□□□□ -1.16
VPS54-204ENST00000416400 LOC100996750A0A140TA64 210 aa7.82□□□□□ -1.16
VPS54-204ENST00000416400 MARSP56192 900 aaKnown RBP7.82□□□□□ -1.16
VPS54-204ENST00000416400 FAM26DQ5JW98 314 aa7.82□□□□□ -1.16
VPS54-204ENST00000416400 ZNF428Q96B54 188 aa7.82□□□□□ -1.16
VPS54-204ENST00000416400 NUDT16Q96DE0 195 aaKnown RBP7.82□□□□□ -1.16
VPS54-204ENST00000416400 KRTAP4-6Q9BYQ5 205 aa7.82□□□□□ -1.16
VPS54-204ENST00000416400 ADAMTS2O95450 1211 aa7.81□□□□□ -1.16
VPS54-204ENST00000416400 ADH6P28332 368 aa7.81□□□□□ -1.16
VPS54-204ENST00000416400 EHHADHQ08426 723 aa7.81□□□□□ -1.16
VPS54-204ENST00000416400 DNAJC14Q6Y2X3 702 aaPredicted RBP7.81□□□□□ -1.16
VPS54-204ENST00000416400 KRT25Q7Z3Z0 450 aa7.81□□□□□ -1.16
VPS54-204ENST00000416400 GSX2Q9BZM3 304 aa7.81□□□□□ -1.16
VPS54-204ENST00000416400 AVENQ9NQS1 362 aaPredicted RBP7.81□□□□□ -1.16
VPS54-204ENST00000416400 GDF2Q9UK05 429 aaPredicted RBP7.81□□□□□ -1.16
VPS54-204ENST00000416400 POLIQ9UNA4 740 aa7.81□□□□□ -1.16
VPS54-204ENST00000416400 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.81□□□□□ -1.16
VPS54-204ENST00000416400 SASH3O75995 380 aa7.8□□□□□ -1.16
VPS54-204ENST00000416400 PDGFAP04085 211 aa7.8□□□□□ -1.16
VPS54-204ENST00000416400 RARAP10276 462 aa7.8□□□□□ -1.16
VPS54-204ENST00000416400 ARAFP10398 606 aa7.8□□□□□ -1.16
VPS54-204ENST00000416400 PDE3BQ13370 1112 aa7.8□□□□□ -1.16
VPS54-204ENST00000416400 ZNF468Q5VIY5 522 aaPredicted RBP7.8□□□□□ -1.16
VPS54-204ENST00000416400 SYT9Q86SS6 491 aa7.8□□□□□ -1.16
VPS54-204ENST00000416400 GOLGA6L1Q8N7Z2 621 aa7.8□□□□□ -1.16
VPS54-204ENST00000416400 SLC30A3Q99726 388 aa7.8□□□□□ -1.16
VPS54-204ENST00000416400 OXCT2Q9BYC2 517 aaPredicted RBP7.8□□□□□ -1.16
VPS54-204ENST00000416400 C2CD2LO14523 706 aa7.79□□□□□ -1.16
VPS54-204ENST00000416400 FZD6O60353 706 aa7.79□□□□□ -1.16
VPS54-204ENST00000416400 NFKB1P19838 968 aa7.79□□□□□ -1.16
VPS54-204ENST00000416400 MAPK1P28482 360 aa7.79□□□□□ -1.16
VPS54-204ENST00000416400 MAP3K10Q02779 954 aa7.79□□□□□ -1.16
VPS54-204ENST00000416400 TBC1D8BQ0IIM8 1120 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms