RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 TRIM50Q86XT4 487 aa3.61□□□□□ -1.83
MCF2-204ENST00000414978 BAP1Q92560 729 aa3.61□□□□□ -1.83
MCF2-204ENST00000414978 MAST1Q9Y2H9 1570 aa3.61□□□□□ -1.83
MCF2-204ENST00000414978 SERINC3Q13530 473 aa3.61□□□□□ -1.83
MCF2-204ENST00000414978 ASB16Q96NS5 453 aa3.61□□□□□ -1.83
MCF2-204ENST00000414978 SPSB2Q99619 263 aa3.61□□□□□ -1.83
MCF2-204ENST00000414978 UNC93B1Q9H1C4 597 aa3.61□□□□□ -1.83
MCF2-204ENST00000414978 FAM205CA6NFA0 338 aa3.61□□□□□ -1.83
MCF2-204ENST00000414978 SORBS3O60504 671 aa3.61□□□□□ -1.83
MCF2-204ENST00000414978 FANCCQ00597 558 aa3.61□□□□□ -1.83
MCF2-204ENST00000414978 TRAF7Q6Q0C0 670 aa3.61□□□□□ -1.83
MCF2-204ENST00000414978 BRINP2Q9C0B6 783 aa3.61□□□□□ -1.83
MCF2-204ENST00000414978 ARHGAP5Q13017 1502 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 F12P00748 615 aaPredicted RBP3.6□□□□□ -1.83
MCF2-204ENST00000414978 NBPF14Q5TI25 921 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 PI16Q6UXB8 463 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 ANKRD13DQ6ZTN6 518 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 PLEKHM2Q8IWE5 1019 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 MICAL1Q8TDZ2 1067 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 KLHL42Q9P2K6 505 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 USP20Q9Y2K6 914 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 MRVI1Q9Y6F6 885 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 KIAA1107Q9UPP5 1409 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 NDUFB5O43674 189 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 ATP2B1P20020 1258 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 EIF1AXP47813 144 aaKnown RBP3.6□□□□□ -1.83
MCF2-204ENST00000414978 COL19A1Q14993 1142 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 CCDC144BQ3MJ40 725 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 NOP9Q86U38 636 aaKnown RBP3.6□□□□□ -1.83
MCF2-204ENST00000414978 NBPF3Q9H094 633 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 INPP5FQ9Y2H2 1132 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 TROQ12816 1431 aaPredicted RBP3.6□□□□□ -1.83
MCF2-204ENST00000414978 PNMA6FA0A0J9YX94 578 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 PPP1R12BO60237 982 aaPredicted RBP3.6□□□□□ -1.83
MCF2-204ENST00000414978 ORC1Q13415 861 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 ERFEQ4G0M1 354 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 SH3PXD2AQ5TCZ1 1133 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 KCNB2Q92953 911 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 ARMC5Q96C12 935 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 NEUROD4Q9HD90 331 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 TMPRSS4Q9NRS4 437 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 WBP1LQ9NX94 342 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 ZNF232Q9UNY5 417 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 TET3O43151 1660 aa3.6□□□□□ -1.83
MCF2-204ENST00000414978 RTEL1-TNFRSF6BF6WH68 1400 aa3.59□□□□□ -1.83
MCF2-204ENST00000414978 MCCD1P59942 119 aaPredicted RBP3.59□□□□□ -1.83
MCF2-204ENST00000414978 TAF7LQ5H9L4 462 aa3.59□□□□□ -1.83
MCF2-204ENST00000414978 NOL8Q76FK4 1167 aaKnown RBP3.59□□□□□ -1.83
MCF2-204ENST00000414978 BCL11AQ9H165 835 aa3.59□□□□□ -1.83
MCF2-204ENST00000414978 GTF3C5Q9Y5Q8 519 aaPredicted RBP3.59□□□□□ -1.83
MCF2-204ENST00000414978 CROCC2H7BZ55 1655 aa3.59□□□□□ -1.83
MCF2-204ENST00000414978 ZMYM3Q14202 1370 aa3.59□□□□□ -1.83
MCF2-204ENST00000414978 SCAMP3O14828 347 aaKnown RBP3.59□□□□□ -1.83
MCF2-204ENST00000414978 GPR182O15218 404 aa3.59□□□□□ -1.83
MCF2-204ENST00000414978 EHHADHQ08426 723 aa3.59□□□□□ -1.83
MCF2-204ENST00000414978 DSC3Q14574 896 aa3.59□□□□□ -1.83
MCF2-204ENST00000414978 BRICD5Q6PL45 260 aa3.59□□□□□ -1.83
MCF2-204ENST00000414978 ANKRD13AQ8IZ07 590 aa3.59□□□□□ -1.83
MCF2-204ENST00000414978 NFATC2IPQ8NCF5 419 aa3.59□□□□□ -1.83
MCF2-204ENST00000414978 CFHR5Q9BXR6 569 aa3.59□□□□□ -1.83
MCF2-204ENST00000414978 PCDHGA11Q9Y5H2 935 aa3.59□□□□□ -1.83
MCF2-204ENST00000414978 RGPD1P0DJD0 1748 aa3.59□□□□□ -1.83
MCF2-204ENST00000414978 CCDC18Q5T9S5 1454 aa3.59□□□□□ -1.84
MCF2-204ENST00000414978 JUNDP17535 347 aa3.59□□□□□ -1.84
MCF2-204ENST00000414978 PTPRNQ16849 979 aa3.59□□□□□ -1.84
MCF2-204ENST00000414978 STAC3Q96MF2 364 aa3.59□□□□□ -1.84
MCF2-204ENST00000414978 A2MP01023 1474 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 NCOA2Q15596 1464 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 RGPD3A6NKT7 1758 aaPredicted RBP3.58□□□□□ -1.84
MCF2-204ENST00000414978 RGPD4Q7Z3J3 1758 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 PRDM15P57071 1507 aaPredicted RBP3.58□□□□□ -1.84
MCF2-204ENST00000414978 ZNF76P36508 570 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 FMR1Q06787 632 aaKnown RBP eCLIP3.58□□□□□ -1.84
MCF2-204ENST00000414978 SF3A1Q15459 793 aaKnown RBP3.58□□□□□ -1.84
MCF2-204ENST00000414978 C4orf48Q5BLP8 95 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 FAM26DQ5JW98 314 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 MEI1Q5TIA1 1274 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 KLK14Q9P0G3 267 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 DMGDHQ9UI17 866 aaKnown RBP3.58□□□□□ -1.84
MCF2-204ENST00000414978 VPS9D1Q9Y2B5 631 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 LRP6O75581 1613 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 ARHGEF5Q12774 1597 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 A0A1W2PRU2 124 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 ACTN4O43707 911 aaKnown RBP3.58□□□□□ -1.84
MCF2-204ENST00000414978 VIL1P09327 827 aaKnown RBP3.58□□□□□ -1.84
MCF2-204ENST00000414978 IFFO2Q5TF58 517 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 FAM160A2Q8N612 972 aaPredicted RBP3.58□□□□□ -1.84
MCF2-204ENST00000414978 EVA1BQ9NVM1 165 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 HCN4Q9Y3Q4 1203 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 RREB1Q92766 1687 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 CEP152O94986 1710 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 PPEF1O14829 653 aaPredicted RBP3.58□□□□□ -1.84
MCF2-204ENST00000414978 ZPR1O75312 459 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 FBXO24O75426 580 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 PTPN5P54829 565 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 EVA1CP58658 441 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 USP4Q13107 963 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 NBPF20Q3BBV1 942 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 PPP1R18Q6NYC8 613 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 RGL4Q8IZJ4 473 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms