RNA–Protein interactions for RNA: ENST00000414057.6

SCAMP4-204, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 1 (best)

Gene SCAMP4, Length 1,477 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-204ENST00000414057 NECTIN2Q92692 538 aa21.79■■□□□ 1.08
SCAMP4-204ENST00000414057 RIC1Q4ADV7 1423 aa21.79■■□□□ 1.08
SCAMP4-204ENST00000414057 COPS6Q7L5N1 327 aa21.78■■□□□ 1.08
SCAMP4-204ENST00000414057 WWC1Q8IX03 1113 aa21.78■■□□□ 1.08
SCAMP4-204ENST00000414057 SLX4Q8IY92 1834 aa21.78■■□□□ 1.08
SCAMP4-204ENST00000414057 RNF123Q5XPI4 1314 aa21.78■■□□□ 1.08
SCAMP4-204ENST00000414057 FKBP4Q02790 459 aaKnown RBP eCLIP21.77■■□□□ 1.087e-6■■■■□ 25.4
SCAMP4-204ENST00000414057 AIMP1Q12904 312 aaKnown RBP21.77■■□□□ 1.08
SCAMP4-204ENST00000414057 PROSER3Q2NL68 480 aa21.77■■□□□ 1.08
SCAMP4-204ENST00000414057 HDGFL1Q5TGJ6 251 aa21.77■■□□□ 1.08
SCAMP4-204ENST00000414057 CC2D2BQ6DHV5 1058 aa21.77■■□□□ 1.08
SCAMP4-204ENST00000414057 WDR63Q8IWG1 891 aa21.77■■□□□ 1.08
SCAMP4-204ENST00000414057 SMC1BQ8NDV3 1235 aa21.77■■□□□ 1.08
SCAMP4-204ENST00000414057 UTP14AQ9BVJ6 771 aaKnown RBP21.77■■□□□ 1.08
SCAMP4-204ENST00000414057 FER1L6Q2WGJ9 1857 aa21.77■■□□□ 1.08
SCAMP4-204ENST00000414057 NUP98P52948 1817 aa21.77■■□□□ 1.08
SCAMP4-204ENST00000414057 ABCC12Q96J65 1359 aa21.77■■□□□ 1.08
SCAMP4-204ENST00000414057 ARFGEF2Q9Y6D5 1785 aa21.77■■□□□ 1.08
SCAMP4-204ENST00000414057 NTSR2O95665 410 aa21.77■■□□□ 1.07
SCAMP4-204ENST00000414057 ANXA1P04083 346 aa21.77■■□□□ 1.07
SCAMP4-204ENST00000414057 GRIPAP1Q4V328 841 aa21.77■■□□□ 1.07
SCAMP4-204ENST00000414057 XAGE3Q8WTP9 111 aa21.77■■□□□ 1.07
SCAMP4-204ENST00000414057 NLRP3Q96P20 1036 aa21.77■■□□□ 1.07
SCAMP4-204ENST00000414057 HOXA10P31260 410 aaPredicted RBP21.76■■□□□ 1.07
SCAMP4-204ENST00000414057 RBM17Q96I25 401 aaKnown RBP21.76■■□□□ 1.07
SCAMP4-204ENST00000414057 DBF4Q9UBU7 674 aaPredicted RBP21.76■■□□□ 1.07
SCAMP4-204ENST00000414057 E9PSI1 815 aa21.75■■□□□ 1.07
SCAMP4-204ENST00000414057 GNAI1P63096 354 aa21.75■■□□□ 1.07
SCAMP4-204ENST00000414057 TIAM2Q8IVF5 1701 aa21.75■■□□□ 1.07
SCAMP4-204ENST00000414057 IFT57Q9NWB7 429 aa21.75■■□□□ 1.07
SCAMP4-204ENST00000414057 KRT24Q2M2I5 525 aa21.74■■□□□ 1.07
SCAMP4-204ENST00000414057 CRAMP1Q96RY5 1269 aa21.74■■□□□ 1.07
SCAMP4-204ENST00000414057 TMX4Q9H1E5 349 aaPredicted RBP21.74■■□□□ 1.07
SCAMP4-204ENST00000414057 TCIRG1Q13488 830 aa21.73■■□□□ 1.07
SCAMP4-204ENST00000414057 CHMP4AQ9BY43 222 aa21.73■■□□□ 1.07
SCAMP4-204ENST00000414057 MBIPQ9NS73 344 aa21.73■■□□□ 1.07
SCAMP4-204ENST00000414057 CHPF2Q9P2E5 772 aa21.73■■□□□ 1.07
SCAMP4-204ENST00000414057 SLFN5Q08AF3 891 aa21.72■■□□□ 1.07
SCAMP4-204ENST00000414057 SLC10A5Q5PT55 438 aa21.72■■□□□ 1.07
SCAMP4-204ENST00000414057 DUSP27Q5VZP5 1158 aa21.72■■□□□ 1.07
SCAMP4-204ENST00000414057 HYPKQ9NX55 129 aa21.72■■□□□ 1.07
SCAMP4-204ENST00000414057 TRMT2AQ8IZ69 625 aaKnown RBP21.71■■□□□ 1.07
SCAMP4-204ENST00000414057 CDCA7LQ96GN5 454 aa21.71■■□□□ 1.07
SCAMP4-204ENST00000414057 PSMD1Q99460 953 aa21.71■■□□□ 1.07
SCAMP4-204ENST00000414057 CACNA1SQ13698 1873 aa21.71■■□□□ 1.07
SCAMP4-204ENST00000414057 CCDC88AQ3V6T2 1871 aa21.71■■□□□ 1.07
SCAMP4-204ENST00000414057 IL16Q14005 1332 aa21.71■■□□□ 1.07
SCAMP4-204ENST00000414057 ZNF853P0CG23 659 aa21.71■■□□□ 1.07
SCAMP4-204ENST00000414057 ANKRD13DQ6ZTN6 518 aa21.71■■□□□ 1.07
SCAMP4-204ENST00000414057 NLRP10Q86W26 655 aa21.71■■□□□ 1.07
SCAMP4-204ENST00000414057 SYNE4Q8N205 404 aa21.71■■□□□ 1.07
SCAMP4-204ENST00000414057 PLBD2Q8NHP8 589 aa21.71■■□□□ 1.07
SCAMP4-204ENST00000414057 ZNF277Q9NRM2 450 aaPredicted RBP21.71■■□□□ 1.07
SCAMP4-204ENST00000414057 IQCA1LA6NCM1 817 aa21.7■■□□□ 1.06
SCAMP4-204ENST00000414057 IARSP41252 1262 aaKnown RBP21.7■■□□□ 1.06
SCAMP4-204ENST00000414057 TRMT112Q9UI30 125 aaKnown RBP21.7■■□□□ 1.06
SCAMP4-204ENST00000414057 DICER1Q9UPY3 1922 aaKnown RBP21.69■■□□□ 1.06
SCAMP4-204ENST00000414057 PPEF1O14829 653 aaPredicted RBP21.69■■□□□ 1.06
SCAMP4-204ENST00000414057 DDNO94850 711 aaPredicted RBP21.69■■□□□ 1.06
SCAMP4-204ENST00000414057 OLFM4Q6UX06 510 aa21.69■■□□□ 1.06
SCAMP4-204ENST00000414057 JDP2Q8WYK2 163 aa21.69■■□□□ 1.06
SCAMP4-204ENST00000414057 CEP350Q5VT06 3117 aa21.69■■□□□ 1.06
SCAMP4-204ENST00000414057 WDR90Q96KV7 1748 aa21.68■■□□□ 1.06
SCAMP4-204ENST00000414057 SH3TC1Q8TE82 1336 aa21.68■■□□□ 1.06
SCAMP4-204ENST00000414057 POTECB2RU33 542 aa21.67■■□□□ 1.06
SCAMP4-204ENST00000414057 GTF3C3Q9Y5Q9 886 aa21.67■■□□□ 1.06
SCAMP4-204ENST00000414057 MYH16Q9H6N6 1097 aa21.66■■□□□ 1.06
SCAMP4-204ENST00000414057 BBOX1O75936 387 aa21.65■■□□□ 1.06
SCAMP4-204ENST00000414057 NEFLP07196 543 aa21.65■■□□□ 1.06
SCAMP4-204ENST00000414057 L3MBTL3Q96JM7 780 aaPredicted RBP21.65■■□□□ 1.06
SCAMP4-204ENST00000414057 C3orf67Q6ZVT6 689 aa21.64■■□□□ 1.06
SCAMP4-204ENST00000414057 DDX46Q7L014 1031 aaKnown RBP21.64■■□□□ 1.06
SCAMP4-204ENST00000414057 ATP6V0A2Q9Y487 856 aa21.64■■□□□ 1.06
SCAMP4-204ENST00000414057 FZD9O00144 591 aa21.64■■□□□ 1.05
SCAMP4-204ENST00000414057 SUPT16HQ9Y5B9 1047 aaKnown RBP21.64■■□□□ 1.05
SCAMP4-204ENST00000414057 ELL2O00472 640 aaPredicted RBP21.63■■□□□ 1.05
SCAMP4-204ENST00000414057 TCERG1O14776 1098 aaKnown RBP21.63■■□□□ 1.05
SCAMP4-204ENST00000414057 HCLS1P14317 486 aaPredicted RBP21.63■■□□□ 1.05
SCAMP4-204ENST00000414057 EIF6P56537 245 aaKnown RBP21.63■■□□□ 1.05
SCAMP4-204ENST00000414057 RIC3Q7Z5B4 369 aa21.63■■□□□ 1.05
SCAMP4-204ENST00000414057 DNAJC5GQ8N7S2 189 aa21.63■■□□□ 1.05
SCAMP4-204ENST00000414057 ISCA1Q9BUE6 129 aa21.63■■□□□ 1.05
SCAMP4-204ENST00000414057 VPS33BQ9H267 617 aa21.63■■□□□ 1.05
SCAMP4-204ENST00000414057 SNED1Q8TER0 1413 aa21.62■■□□□ 1.05
SCAMP4-204ENST00000414057 ANKRD36CQ5JPF3 1778 aa21.62■■□□□ 1.05
SCAMP4-204ENST00000414057 CCDC30Q5VVM6 783 aa21.62■■□□□ 1.05
SCAMP4-204ENST00000414057 CHADLQ6NUI6 762 aa21.62■■□□□ 1.05
SCAMP4-204ENST00000414057 LARGE2Q8N3Y3 721 aa21.62■■□□□ 1.05
SCAMP4-204ENST00000414057 SUPT20HQ8NEM7 779 aa21.62■■□□□ 1.05
SCAMP4-204ENST00000414057 RCAN3Q9UKA8 241 aa21.62■■□□□ 1.05
SCAMP4-204ENST00000414057 ABCC4O15439 1325 aa21.62■■□□□ 1.05
SCAMP4-204ENST00000414057 HSP90B1P14625 803 aaKnown RBP21.61■■□□□ 1.05
SCAMP4-204ENST00000414057 TRIM28Q13263 835 aaKnown RBP21.61■■□□□ 1.05
SCAMP4-204ENST00000414057 TMC4Q7Z404 712 aa21.61■■□□□ 1.05
SCAMP4-204ENST00000414057 SP8Q8IXZ3 490 aa21.61■■□□□ 1.05
SCAMP4-204ENST00000414057 GPC2Q8N158 579 aa21.61■■□□□ 1.05
SCAMP4-204ENST00000414057 SPINK5Q9NQ38 1064 aaPredicted RBP21.61■■□□□ 1.05
SCAMP4-204ENST00000414057 HACL1Q9UJ83 578 aa21.61■■□□□ 1.05
SCAMP4-204ENST00000414057 DDX58O95786 925 aaKnown RBP21.6■■□□□ 1.05
SCAMP4-204ENST00000414057 ZNF541Q9H0D2 1346 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms