RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 RASSF7Q02833 373 aa19.13■□□□□ 0.65
LIMS4-201ENST00000413601 CCDC30Q5VVM6 783 aa19.13■□□□□ 0.65
LIMS4-201ENST00000413601 PRPF40BQ6NWY9 871 aaKnown RBP19.13■□□□□ 0.65
LIMS4-201ENST00000413601 ZNF526Q8TF50 670 aaPredicted RBP19.13■□□□□ 0.65
LIMS4-201ENST00000413601 UTP14AQ9BVJ6 771 aaKnown RBP19.13■□□□□ 0.65
LIMS4-201ENST00000413601 FANCIQ9NVI1 1328 aa19.12■□□□□ 0.65
LIMS4-201ENST00000413601 TWISTNBQ3B726 338 aaPredicted RBP19.12■□□□□ 0.65
LIMS4-201ENST00000413601 NLRP10Q86W26 655 aa19.12■□□□□ 0.65
LIMS4-201ENST00000413601 TIAM2Q8IVF5 1701 aa19.11■□□□□ 0.65
LIMS4-201ENST00000413601 RIC1Q4ADV7 1423 aa19.11■□□□□ 0.65
LIMS4-201ENST00000413601 TCERG1O14776 1098 aaKnown RBP19.11■□□□□ 0.65
LIMS4-201ENST00000413601 ZNF428Q96B54 188 aa19.11■□□□□ 0.65
LIMS4-201ENST00000413601 CHMP4AQ9BY43 222 aa19.11■□□□□ 0.65
LIMS4-201ENST00000413601 RNF181Q9P0P0 153 aa19.11■□□□□ 0.65
LIMS4-201ENST00000413601 DDX60Q8IY21 1712 aaKnown RBP19.11■□□□□ 0.65
LIMS4-201ENST00000413601 NFKBIEO00221 500 aa19.1■□□□□ 0.65
LIMS4-201ENST00000413601 PRELPP51888 382 aa19.1■□□□□ 0.65
LIMS4-201ENST00000413601 CRY2Q49AN0 593 aa19.1■□□□□ 0.65
LIMS4-201ENST00000413601 GPBP1L1Q9HC44 474 aaPredicted RBP19.1■□□□□ 0.65
LIMS4-201ENST00000413601 SPINK5Q9NQ38 1064 aaPredicted RBP19.1■□□□□ 0.65
LIMS4-201ENST00000413601 TAF1P21675 1872 aa19.09■□□□□ 0.65
LIMS4-201ENST00000413601 ATP5J2-PTCD1G3V325 749 aa19.09■□□□□ 0.65
LIMS4-201ENST00000413601 GOLGA2Q08379 1002 aa19.09■□□□□ 0.65
LIMS4-201ENST00000413601 C3orf67Q6ZVT6 689 aa19.09■□□□□ 0.65
LIMS4-201ENST00000413601 RIC3Q7Z5B4 369 aa19.09■□□□□ 0.65
LIMS4-201ENST00000413601 SYNE4Q8N205 404 aa19.09■□□□□ 0.65
LIMS4-201ENST00000413601 TRMT112Q9UI30 125 aaKnown RBP19.09■□□□□ 0.65
LIMS4-201ENST00000413601 LMNB1P20700 586 aa19.08■□□□□ 0.64
LIMS4-201ENST00000413601 ALDH1B1P30837 517 aa19.08■□□□□ 0.64
LIMS4-201ENST00000413601 SLC10A5Q5PT55 438 aa19.08■□□□□ 0.64
LIMS4-201ENST00000413601 RPGRQ92834 1020 aaKnown RBP19.08■□□□□ 0.64
LIMS4-201ENST00000413601 ISCA1Q9BUE6 129 aa19.08■□□□□ 0.64
LIMS4-201ENST00000413601 RNF123Q5XPI4 1314 aa19.07■□□□□ 0.64
LIMS4-201ENST00000413601 CCER2I3L3R5 266 aa19.07■□□□□ 0.64
LIMS4-201ENST00000413601 EXOSC9Q06265 439 aaKnown RBP19.07■□□□□ 0.64
LIMS4-201ENST00000413601 C7orf43Q8WVR3 580 aa19.07■□□□□ 0.64
LIMS4-201ENST00000413601 NLRP3Q96P20 1036 aa19.07■□□□□ 0.64
LIMS4-201ENST00000413601 STK31Q9BXU1 1019 aa19.07■□□□□ 0.64
LIMS4-201ENST00000413601 HCLS1P14317 486 aaPredicted RBP19.06■□□□□ 0.64
LIMS4-201ENST00000413601 HOXA10P31260 410 aaPredicted RBP19.06■□□□□ 0.64
LIMS4-201ENST00000413601 SOGA3Q5TF21 947 aa19.06■□□□□ 0.64
LIMS4-201ENST00000413601 OLFM4Q6UX06 510 aa19.06■□□□□ 0.64
LIMS4-201ENST00000413601 SH3TC1Q8TE82 1336 aa19.05■□□□□ 0.64
LIMS4-201ENST00000413601 ZNF521Q96K83 1311 aa19.05■□□□□ 0.64
LIMS4-201ENST00000413601 MYH16Q9H6N6 1097 aa19.05■□□□□ 0.64
LIMS4-201ENST00000413601 VAMP4O75379 141 aa19.04■□□□□ 0.64
LIMS4-201ENST00000413601 DDX58O95786 925 aaKnown RBP19.04■□□□□ 0.64
LIMS4-201ENST00000413601 SLC4A2P04920 1241 aa19.04■□□□□ 0.64
LIMS4-201ENST00000413601 G2E3Q7L622 706 aa19.04■□□□□ 0.64
LIMS4-201ENST00000413601 FAM89AQ96GI7 184 aa19.04■□□□□ 0.64
LIMS4-201ENST00000413601 RBM17Q96I25 401 aaKnown RBP19.04■□□□□ 0.64
LIMS4-201ENST00000413601 MYD88Q99836 296 aa19.04■□□□□ 0.64
LIMS4-201ENST00000413601 TAOK3Q9H2K8 898 aa19.04■□□□□ 0.64
LIMS4-201ENST00000413601 TRIM28Q13263 835 aaKnown RBP19.03■□□□□ 0.64
LIMS4-201ENST00000413601 CCDC93Q567U6 631 aa19.03■□□□□ 0.64
LIMS4-201ENST00000413601 RTL5Q5HYW3 569 aaPredicted RBP19.03■□□□□ 0.64
LIMS4-201ENST00000413601 CRAMP1Q96RY5 1269 aa19.03■□□□□ 0.64
LIMS4-201ENST00000413601 MAP3K2Q9Y2U5 619 aa19.03■□□□□ 0.64
LIMS4-201ENST00000413601 LTBP3Q9NS15 1303 aa19.02■□□□□ 0.64
LIMS4-201ENST00000413601 DIEXFQ68CQ4 756 aaKnown RBP19.02■□□□□ 0.64
LIMS4-201ENST00000413601 METTL22Q9BUU2 404 aaPredicted RBP19.02■□□□□ 0.64
LIMS4-201ENST00000413601 PI4KAP2A4QPH2 592 aa19.01■□□□□ 0.63
LIMS4-201ENST00000413601 KSR2Q6VAB6 950 aa19.01■□□□□ 0.63
LIMS4-201ENST00000413601 PI4KAP1Q8N8J0 262 aa19.01■□□□□ 0.63
LIMS4-201ENST00000413601 C1QTNF8P60827 252 aa19■□□□□ 0.63
LIMS4-201ENST00000413601 SLC51AQ86UW1 340 aa19■□□□□ 0.63
LIMS4-201ENST00000413601 RTKN2Q8IZC4 609 aa19■□□□□ 0.63
LIMS4-201ENST00000413601 NMRK2Q9NPI5 230 aa19■□□□□ 0.63
LIMS4-201ENST00000413601 ABCC4O15439 1325 aa19■□□□□ 0.63
LIMS4-201ENST00000413601 ZC3H4Q9UPT8 1303 aaKnown RBP19■□□□□ 0.63
LIMS4-201ENST00000413601 KIF3CO14782 793 aa18.99■□□□□ 0.63
LIMS4-201ENST00000413601 PPEF1O14829 653 aaPredicted RBP18.99■□□□□ 0.63
LIMS4-201ENST00000413601 FKBP4Q02790 459 aaKnown RBP eCLIP18.99■□□□□ 0.63
LIMS4-201ENST00000413601 CCDC191Q8NCU4 936 aa18.99■□□□□ 0.63
LIMS4-201ENST00000413601 MYH3P11055 1940 aa18.99■□□□□ 0.63
LIMS4-201ENST00000413601 KDM2BQ8NHM5 1336 aa18.99■□□□□ 0.63
LIMS4-201ENST00000413601 IRS4O14654 1257 aaPredicted RBP18.98■□□□□ 0.63
LIMS4-201ENST00000413601 FLIIQ13045 1269 aa18.98■□□□□ 0.63
LIMS4-201ENST00000413601 MIER1Q8N108 512 aa18.98■□□□□ 0.63
LIMS4-201ENST00000413601 ZBTB38Q8NAP3 1195 aaPredicted RBP18.98■□□□□ 0.63
LIMS4-201ENST00000413601 JARID2Q92833 1246 aaPredicted RBP18.98■□□□□ 0.63
LIMS4-201ENST00000413601 ZNF277Q9NRM2 450 aaPredicted RBP18.98■□□□□ 0.63
LIMS4-201ENST00000413601 CWC25Q9NXE8 425 aaPredicted RBP18.98■□□□□ 0.63
LIMS4-201ENST00000413601 SNED1Q8TER0 1413 aa18.98■□□□□ 0.63
LIMS4-201ENST00000413601 CC2D2BQ6DHV5 1058 aa18.97■□□□□ 0.63
LIMS4-201ENST00000413601 DDX46Q7L014 1031 aaKnown RBP18.97■□□□□ 0.63
LIMS4-201ENST00000413601 GLTPD2A6NH11 291 aa18.96■□□□□ 0.63
LIMS4-201ENST00000413601 IGKV5-2P06315 115 aa18.96■□□□□ 0.63
LIMS4-201ENST00000413601 NEXNQ0ZGT2 675 aa18.96■□□□□ 0.63
LIMS4-201ENST00000413601 FKBP5Q13451 457 aaPredicted RBP18.96■□□□□ 0.63
LIMS4-201ENST00000413601 COL4A1P02462 1669 aa18.95■□□□□ 0.62
LIMS4-201ENST00000413601 E9PSI1 815 aa18.95■□□□□ 0.62
LIMS4-201ENST00000413601 PCCAP05165 728 aaPredicted RBP18.95■□□□□ 0.62
LIMS4-201ENST00000413601 SF3B3Q15393 1217 aaKnown RBP18.95■□□□□ 0.62
LIMS4-201ENST00000413601 CWF19L2Q2TBE0 894 aaKnown RBP18.95■□□□□ 0.62
LIMS4-201ENST00000413601 RRAGCQ9HB90 399 aa18.95■□□□□ 0.62
LIMS4-201ENST00000413601 ATP6V0A2Q9Y487 856 aa18.95■□□□□ 0.62
LIMS4-201ENST00000413601 BBOX1O75936 387 aa18.94■□□□□ 0.62
LIMS4-201ENST00000413601 SLFN5Q08AF3 891 aa18.94■□□□□ 0.62
LIMS4-201ENST00000413601 GRAPQ13588 217 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms