RNA–Protein interactions for RNA: ENST00000413578.5

LIMS2-210, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 3

Gene LIMS2, Length 930 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-210ENST00000413578 GTF2E1P29083 439 aaPredicted RBP16.15■□□□□ 0.18
LIMS2-210ENST00000413578 ZNF34Q8IZ26 560 aa16.15■□□□□ 0.18
LIMS2-210ENST00000413578 CNTROBQ8N137 903 aa16.15■□□□□ 0.18
LIMS2-210ENST00000413578 NTSR2O95665 410 aa16.14■□□□□ 0.17
LIMS2-210ENST00000413578 SUSD4Q5VX71 490 aa16.14■□□□□ 0.17
LIMS2-210ENST00000413578 MAP1SQ66K74 1059 aaPredicted RBP16.14■□□□□ 0.17
LIMS2-210ENST00000413578 LRP10Q7Z4F1 713 aa16.14■□□□□ 0.17
LIMS2-210ENST00000413578 JDP2Q8WYK2 163 aa16.14■□□□□ 0.17
LIMS2-210ENST00000413578 CTCFP49711 727 aaPredicted RBP16.13■□□□□ 0.17
LIMS2-210ENST00000413578 SCNN1DP51172 638 aa16.13■□□□□ 0.17
LIMS2-210ENST00000413578 GRIPAP1Q4V328 841 aa16.13■□□□□ 0.17
LIMS2-210ENST00000413578 C3orf67Q6ZVT6 689 aa16.13■□□□□ 0.17
LIMS2-210ENST00000413578 NGEFQ8N5V2 710 aa16.13■□□□□ 0.17
LIMS2-210ENST00000413578 CRAMP1Q96RY5 1269 aa16.13■□□□□ 0.17
LIMS2-210ENST00000413578 THUMPD2Q9BTF0 503 aaKnown RBP16.13■□□□□ 0.17
LIMS2-210ENST00000413578 CLEC11AQ9Y240 323 aa16.13■□□□□ 0.17
LIMS2-210ENST00000413578 LTBP1Q14766 1721 aa16.13■□□□□ 0.17
LIMS2-210ENST00000413578 ERBB4Q15303 1308 aa16.13■□□□□ 0.17
LIMS2-210ENST00000413578 GPTP24298 496 aa16.12■□□□□ 0.17
LIMS2-210ENST00000413578 NFE2L2Q16236 605 aa16.12■□□□□ 0.17
LIMS2-210ENST00000413578 GIGYF2Q6Y7W6 1299 aaKnown RBP16.12■□□□□ 0.17
LIMS2-210ENST00000413578 KIF6Q6ZMV9 814 aa16.12■□□□□ 0.17
LIMS2-210ENST00000413578 ZBTB3Q9H5J0 574 aa16.12■□□□□ 0.17
LIMS2-210ENST00000413578 RRP7AQ9Y3A4 280 aaKnown RBP16.12■□□□□ 0.17
LIMS2-210ENST00000413578 MYL6BP14649 208 aa16.11■□□□□ 0.17
LIMS2-210ENST00000413578 EIF6P56537 245 aaKnown RBP16.11■□□□□ 0.17
LIMS2-210ENST00000413578 PDIA6Q15084 440 aa16.11■□□□□ 0.17
LIMS2-210ENST00000413578 DEFB115Q30KQ5 88 aa16.11■□□□□ 0.17
LIMS2-210ENST00000413578 RPGRQ92834 1020 aaKnown RBP16.11■□□□□ 0.17
LIMS2-210ENST00000413578 DDX21Q9NR30 783 aaKnown RBP eCLIP16.11■□□□□ 0.17
LIMS2-210ENST00000413578 EPS15P42566 896 aa16.1■□□□□ 0.17
LIMS2-210ENST00000413578 AIDAQ96BJ3 306 aa16.1■□□□□ 0.17
LIMS2-210ENST00000413578 RBM17Q96I25 401 aaKnown RBP16.1■□□□□ 0.17
LIMS2-210ENST00000413578 PPEF1O14829 653 aaPredicted RBP16.09■□□□□ 0.17
LIMS2-210ENST00000413578 PARP10Q53GL7 1025 aa16.09■□□□□ 0.17
LIMS2-210ENST00000413578 SLC10A5Q5PT55 438 aa16.09■□□□□ 0.17
LIMS2-210ENST00000413578 LARGE2Q8N3Y3 721 aa16.09■□□□□ 0.17
LIMS2-210ENST00000413578 GJA3Q9Y6H8 435 aa16.09■□□□□ 0.17
LIMS2-210ENST00000413578 NUP98P52948 1817 aa16.09■□□□□ 0.17
LIMS2-210ENST00000413578 WDR33Q9C0J8 1336 aaKnown RBP16.09■□□□□ 0.17
LIMS2-210ENST00000413578 NEFMP07197 916 aa16.08■□□□□ 0.16
LIMS2-210ENST00000413578 HSPA8P11142 646 aaKnown RBP16.08■□□□□ 0.16
LIMS2-210ENST00000413578 LBX1P52954 281 aa16.08■□□□□ 0.16
LIMS2-210ENST00000413578 FMR1Q06787 632 aaKnown RBP eCLIP16.08■□□□□ 0.16
LIMS2-210ENST00000413578 THSD7BQ9C0I4 1608 aa16.08■□□□□ 0.16
LIMS2-210ENST00000413578 DLG5Q8TDM6 1919 aa16.07■□□□□ 0.16
LIMS2-210ENST00000413578 LMOD1P29536 600 aaPredicted RBP16.07■□□□□ 0.16
LIMS2-210ENST00000413578 USP50Q70EL3 339 aaPredicted RBP16.07■□□□□ 0.16
LIMS2-210ENST00000413578 PPP1R42Q7Z4L9 355 aa16.07■□□□□ 0.16
LIMS2-210ENST00000413578 RTFDC1Q9BY42 306 aaPredicted RBP16.07■□□□□ 0.16
LIMS2-210ENST00000413578 VPS33BQ9H267 617 aa16.07■□□□□ 0.16
LIMS2-210ENST00000413578 ATP6V0A2Q9Y487 856 aa16.07■□□□□ 0.16
LIMS2-210ENST00000413578 MAP2K1Q02750 393 aaPredicted RBP16.06■□□□□ 0.16
LIMS2-210ENST00000413578 PROSER3Q2NL68 480 aa16.06■□□□□ 0.16
LIMS2-210ENST00000413578 NIM1KQ8IY84 436 aa16.06■□□□□ 0.16
LIMS2-210ENST00000413578 NLRP3Q96P20 1036 aa16.06■□□□□ 0.16
LIMS2-210ENST00000413578 ABT1Q9ULW3 272 aaKnown RBP16.06■□□□□ 0.16
LIMS2-210ENST00000413578 ABCC4O15439 1325 aa16.05■□□□□ 0.16
LIMS2-210ENST00000413578 PPIP5K2O43314 1243 aa16.05■□□□□ 0.16
LIMS2-210ENST00000413578 AOC3Q16853 763 aa16.05■□□□□ 0.16
LIMS2-210ENST00000413578 CST9Q5W186 159 aa16.05■□□□□ 0.16
LIMS2-210ENST00000413578 GPRC5DQ9NZD1 345 aa16.05■□□□□ 0.16
LIMS2-210ENST00000413578 TRAF5O00463 557 aa16.04■□□□□ 0.16
LIMS2-210ENST00000413578 TCERG1O14776 1098 aaKnown RBP16.04■□□□□ 0.16
LIMS2-210ENST00000413578 UTP14AQ9BVJ6 771 aaKnown RBP16.04■□□□□ 0.16
LIMS2-210ENST00000413578 BABAM1Q9NWV8 329 aa16.04■□□□□ 0.16
LIMS2-210ENST00000413578 TSPYL4Q9UJ04 414 aa16.04■□□□□ 0.16
LIMS2-210ENST00000413578 MAPK8IP3Q9UPT6 1336 aa16.03■□□□□ 0.16
LIMS2-210ENST00000413578 CXCL9Q07325 125 aa16.03■□□□□ 0.16
LIMS2-210ENST00000413578 CAPNS2Q96L46 248 aa16.03■□□□□ 0.16
LIMS2-210ENST00000413578 PNNQ9H307 717 aaKnown RBP16.03■□□□□ 0.16
LIMS2-210ENST00000413578 ADARB2Q9NS39 739 aaKnown RBP16.03■□□□□ 0.16
LIMS2-210ENST00000413578 ZNRF3Q9ULT6 936 aa16.03■□□□□ 0.16
LIMS2-210ENST00000413578 TLL2Q9Y6L7 1015 aa16.03■□□□□ 0.16
LIMS2-210ENST00000413578 ANXA1P04083 346 aa16.02■□□□□ 0.16
LIMS2-210ENST00000413578 NLRP10Q86W26 655 aa16.02■□□□□ 0.16
LIMS2-210ENST00000413578 SP8Q8IXZ3 490 aa16.02■□□□□ 0.16
LIMS2-210ENST00000413578 PGAP2Q9UHJ9 254 aa16.02■□□□□ 0.16
LIMS2-210ENST00000413578 CDHR2Q9BYE9 1310 aa16.01■□□□□ 0.15
LIMS2-210ENST00000413578 BBOX1O75936 387 aa16.01■□□□□ 0.15
LIMS2-210ENST00000413578 EIF2S2P20042 333 aaKnown RBP16.01■□□□□ 0.15
LIMS2-210ENST00000413578 KIAA2012Q0VF49 1180 aa16.01■□□□□ 0.15
LIMS2-210ENST00000413578 CYP4F22Q6NT55 531 aa16.01■□□□□ 0.15
LIMS2-210ENST00000413578 ECE1P42892 770 aa16■□□□□ 0.15
LIMS2-210ENST00000413578 GMPSP49915 693 aaPredicted RBP16■□□□□ 0.15
LIMS2-210ENST00000413578 RIPK4P57078 832 aa16■□□□□ 0.15
LIMS2-210ENST00000413578 HSP90AB3PQ58FF7 597 aa16■□□□□ 0.15
LIMS2-210ENST00000413578 COPS6Q7L5N1 327 aa16■□□□□ 0.15
LIMS2-210ENST00000413578 SUPT20HQ8NEM7 779 aa16■□□□□ 0.15
LIMS2-210ENST00000413578 ABHD8Q96I13 439 aa16■□□□□ 0.15
LIMS2-210ENST00000413578 GPR101Q96P66 508 aaPredicted RBP16■□□□□ 0.15
LIMS2-210ENST00000413578 HCLS1P14317 486 aaPredicted RBP15.99■□□□□ 0.15
LIMS2-210ENST00000413578 HIRAP54198 1017 aaPredicted RBP15.99■□□□□ 0.15
LIMS2-210ENST00000413578 DPP8Q6V1X1 898 aaPredicted RBP15.99■□□□□ 0.15
LIMS2-210ENST00000413578 SAPCD2Q86UD0 394 aa15.99■□□□□ 0.15
LIMS2-210ENST00000413578 MPNDQ8N594 471 aa15.99■□□□□ 0.15
LIMS2-210ENST00000413578 XAGE3Q8WTP9 111 aa15.99■□□□□ 0.15
LIMS2-210ENST00000413578 DUOX1Q9NRD9 1551 aa15.99■□□□□ 0.15
LIMS2-210ENST00000413578 TMPOP42166 694 aaKnown RBP15.98■□□□□ 0.15
LIMS2-210ENST00000413578 TCIRG1Q13488 830 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms