RNA–Protein interactions for RNA: ENST00000412218.1

LINC01643-201, Transcript of long intergenic non-protein coding RNA 1643, humanhuman

TSL 5 BASIC

Gene LINC01643, Length 757 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01643-201ENST00000412218 CCDC93Q567U6 631 aa13.2□□□□□ -0.3
LINC01643-201ENST00000412218 PPP1R42Q7Z4L9 355 aa13.2□□□□□ -0.3
LINC01643-201ENST00000412218 CACNA1SQ13698 1873 aa13.2□□□□□ -0.3
LINC01643-201ENST00000412218 SNED1Q8TER0 1413 aa13.2□□□□□ -0.3
LINC01643-201ENST00000412218 ALDH1B1P30837 517 aa13.19□□□□□ -0.3
LINC01643-201ENST00000412218 GNAI1P63096 354 aa13.19□□□□□ -0.3
LINC01643-201ENST00000412218 AIMP1Q12904 312 aaKnown RBP13.19□□□□□ -0.3
LINC01643-201ENST00000412218 HSP90AB3PQ58FF7 597 aa13.19□□□□□ -0.3
LINC01643-201ENST00000412218 DUSP27Q5VZP5 1158 aa13.19□□□□□ -0.3
LINC01643-201ENST00000412218 RBM46Q8TBY0 533 aaKnown RBP13.19□□□□□ -0.3
LINC01643-201ENST00000412218 RRAGCQ9HB90 399 aa13.19□□□□□ -0.3
LINC01643-201ENST00000412218 ANKRD36CQ5JPF3 1778 aa13.19□□□□□ -0.3
LINC01643-201ENST00000412218 RNF123Q5XPI4 1314 aa13.18□□□□□ -0.3
LINC01643-201ENST00000412218 HOXA10P31260 410 aaPredicted RBP13.18□□□□□ -0.3
LINC01643-201ENST00000412218 FKBP4Q02790 459 aaKnown RBP eCLIP13.18□□□□□ -0.3
LINC01643-201ENST00000412218 OLFM4Q6UX06 510 aa13.18□□□□□ -0.3
LINC01643-201ENST00000412218 C3orf67Q6ZVT6 689 aa13.18□□□□□ -0.3
LINC01643-201ENST00000412218 C16orf71Q8IYS4 520 aaPredicted RBP13.18□□□□□ -0.3
LINC01643-201ENST00000412218 RPGRQ92834 1020 aaKnown RBP13.18□□□□□ -0.3
LINC01643-201ENST00000412218 UTP14AQ9BVJ6 771 aaKnown RBP13.18□□□□□ -0.3
LINC01643-201ENST00000412218 DBF4Q9UBU7 674 aaPredicted RBP13.18□□□□□ -0.3
LINC01643-201ENST00000412218 WDR90Q96KV7 1748 aa13.17□□□□□ -0.3
LINC01643-201ENST00000412218 TCIRG1Q13488 830 aa13.17□□□□□ -0.3
LINC01643-201ENST00000412218 NLRP10Q86W26 655 aa13.17□□□□□ -0.3
LINC01643-201ENST00000412218 RTKN2Q8IZC4 609 aa13.17□□□□□ -0.3
LINC01643-201ENST00000412218 CCDC27Q2M243 656 aa13.16□□□□□ -0.3
LINC01643-201ENST00000412218 SLC10A5Q5PT55 438 aa13.16□□□□□ -0.3
LINC01643-201ENST00000412218 PLBD2Q8NHP8 589 aa13.16□□□□□ -0.3
LINC01643-201ENST00000412218 MRS2Q9HD23 443 aa13.16□□□□□ -0.3
LINC01643-201ENST00000412218 HYPKQ9NX55 129 aa13.16□□□□□ -0.3
LINC01643-201ENST00000412218 VEGFAP15692 232 aaPredicted RBP13.15□□□□□ -0.3
LINC01643-201ENST00000412218 FSTL1Q12841 308 aa13.15□□□□□ -0.3
LINC01643-201ENST00000412218 DPY19L2Q6NUT2 758 aa13.15□□□□□ -0.3
LINC01643-201ENST00000412218 RBM17Q96I25 401 aaKnown RBP13.15□□□□□ -0.3
LINC01643-201ENST00000412218 NLRP3Q96P20 1036 aa13.15□□□□□ -0.3
LINC01643-201ENST00000412218 CRAMP1Q96RY5 1269 aa13.15□□□□□ -0.3
LINC01643-201ENST00000412218 ZNF277Q9NRM2 450 aaPredicted RBP13.15□□□□□ -0.3
LINC01643-201ENST00000412218 DICER1Q9UPY3 1922 aaKnown RBP13.15□□□□□ -0.3
LINC01643-201ENST00000412218 POTECB2RU33 542 aa13.14□□□□□ -0.31
LINC01643-201ENST00000412218 PPEF1O14829 653 aaPredicted RBP13.14□□□□□ -0.31
LINC01643-201ENST00000412218 CC2D2BQ6DHV5 1058 aa13.14□□□□□ -0.31
LINC01643-201ENST00000412218 ANKRD13DQ6ZTN6 518 aa13.14□□□□□ -0.31
LINC01643-201ENST00000412218 SLC51AQ86UW1 340 aa13.14□□□□□ -0.31
LINC01643-201ENST00000412218 C8orf58Q8NAV2 365 aa13.14□□□□□ -0.31
LINC01643-201ENST00000412218 PSMD1Q99460 953 aa13.14□□□□□ -0.31
LINC01643-201ENST00000412218 SH3TC1Q8TE82 1336 aa13.13□□□□□ -0.31
LINC01643-201ENST00000412218 CCDC88AQ3V6T2 1871 aa13.13□□□□□ -0.31
LINC01643-201ENST00000412218 ELL2O00472 640 aaPredicted RBP13.13□□□□□ -0.31
LINC01643-201ENST00000412218 IARSP41252 1262 aaKnown RBP13.13□□□□□ -0.31
LINC01643-201ENST00000412218 APLP1P51693 650 aa13.13□□□□□ -0.31
LINC01643-201ENST00000412218 NCBP3Q53F19 620 aaKnown RBP13.13□□□□□ -0.31
LINC01643-201ENST00000412218 WWC1Q8IX03 1113 aa13.13□□□□□ -0.31
LINC01643-201ENST00000412218 SYNE4Q8N205 404 aa13.13□□□□□ -0.31
LINC01643-201ENST00000412218 SMC1BQ8NDV3 1235 aa13.13□□□□□ -0.31
LINC01643-201ENST00000412218 ISCA1Q9BUE6 129 aa13.13□□□□□ -0.31
LINC01643-201ENST00000412218 TRMT112Q9UI30 125 aaKnown RBP13.13□□□□□ -0.31
LINC01643-201ENST00000412218 ABCC4O15439 1325 aa13.13□□□□□ -0.31
LINC01643-201ENST00000412218 ZNF541Q9H0D2 1346 aa13.13□□□□□ -0.31
LINC01643-201ENST00000412218 DDNO94850 711 aaPredicted RBP13.12□□□□□ -0.31
LINC01643-201ENST00000412218 HCLS1P14317 486 aaPredicted RBP13.12□□□□□ -0.31
LINC01643-201ENST00000412218 GRIPAP1Q4V328 841 aa13.12□□□□□ -0.31
LINC01643-201ENST00000412218 TSR2Q969E8 191 aaKnown RBP13.12□□□□□ -0.31
LINC01643-201ENST00000412218 COL4A5P29400 1685 aa13.12□□□□□ -0.31
LINC01643-201ENST00000412218 ATP5J2-PTCD1G3V325 749 aa13.11□□□□□ -0.31
LINC01643-201ENST00000412218 GOLGA2Q08379 1002 aa13.11□□□□□ -0.31
LINC01643-201ENST00000412218 TSPYL6Q8N831 410 aa13.11□□□□□ -0.31
LINC01643-201ENST00000412218 L3MBTL3Q96JM7 780 aaPredicted RBP13.11□□□□□ -0.31
LINC01643-201ENST00000412218 PHAXQ9H814 394 aaKnown RBP13.11□□□□□ -0.31
LINC01643-201ENST00000412218 LAMB2P55268 1798 aa13.11□□□□□ -0.31
LINC01643-201ENST00000412218 IL16Q14005 1332 aa13.11□□□□□ -0.31
LINC01643-201ENST00000412218 FZD9O00144 591 aa13.1□□□□□ -0.31
LINC01643-201ENST00000412218 TRIM28Q13263 835 aaKnown RBP13.1□□□□□ -0.31
LINC01643-201ENST00000412218 CCDC30Q5VVM6 783 aa13.1□□□□□ -0.31
LINC01643-201ENST00000412218 ZNF428Q96B54 188 aa13.1□□□□□ -0.31
LINC01643-201ENST00000412218 ATP6V0A2Q9Y487 856 aa13.1□□□□□ -0.31
LINC01643-201ENST00000412218 DDX60Q8IY21 1712 aaKnown RBP13.1□□□□□ -0.31
LINC01643-201ENST00000412218 TCERG1O14776 1098 aaKnown RBP13.09□□□□□ -0.31
LINC01643-201ENST00000412218 GRAPQ13588 217 aa13.09□□□□□ -0.31
LINC01643-201ENST00000412218 RIC3Q7Z5B4 369 aa13.09□□□□□ -0.31
LINC01643-201ENST00000412218 GRAPLQ8TC17 118 aaPredicted RBP13.09□□□□□ -0.31
LINC01643-201ENST00000412218 FAM89AQ96GI7 184 aa13.09□□□□□ -0.31
LINC01643-201ENST00000412218 CHMP4AQ9BY43 222 aa13.09□□□□□ -0.31
LINC01643-201ENST00000412218 IQCA1LA6NCM1 817 aa13.08□□□□□ -0.32
LINC01643-201ENST00000412218 BBOX1O75936 387 aa13.08□□□□□ -0.32
LINC01643-201ENST00000412218 HNRNPUQ00839 825 aaKnown RBP eCLIP13.08□□□□□ -0.32
LINC01643-201ENST00000412218 DDX46Q7L014 1031 aaKnown RBP13.08□□□□□ -0.32
LINC01643-201ENST00000412218 JDP2Q8WYK2 163 aa13.08□□□□□ -0.32
LINC01643-201ENST00000412218 DDX58O95786 925 aaKnown RBP13.07□□□□□ -0.32
LINC01643-201ENST00000412218 SF3B3Q15393 1217 aaKnown RBP13.07□□□□□ -0.32
LINC01643-201ENST00000412218 TWISTNBQ3B726 338 aaPredicted RBP13.07□□□□□ -0.32
LINC01643-201ENST00000412218 SP8Q8IXZ3 490 aa13.07□□□□□ -0.32
LINC01643-201ENST00000412218 DNAJC5GQ8N7S2 189 aa13.07□□□□□ -0.32
LINC01643-201ENST00000412218 ZBTB38Q8NAP3 1195 aaPredicted RBP13.07□□□□□ -0.32
LINC01643-201ENST00000412218 MYD88Q99836 296 aa13.07□□□□□ -0.32
LINC01643-201ENST00000412218 RTFDC1Q9BY42 306 aaPredicted RBP13.07□□□□□ -0.32
LINC01643-201ENST00000412218 TMX4Q9H1E5 349 aaPredicted RBP13.07□□□□□ -0.32
LINC01643-201ENST00000412218 LRRC37AA6NMS7 1700 aa13.07□□□□□ -0.32
LINC01643-201ENST00000412218 FANCIQ9NVI1 1328 aa13.07□□□□□ -0.32
LINC01643-201ENST00000412218 IRS4O14654 1257 aaPredicted RBP13.06□□□□□ -0.32
LINC01643-201ENST00000412218 POTEIP0CG38 1075 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms