RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 NLRP10Q86W26 655 aa24.73■■□□□ 1.55
SF3A1-202ENST00000411423 FAM9BQ8IZU0 186 aa24.73■■□□□ 1.55
SF3A1-202ENST00000411423 SYNE4Q8N205 404 aa24.73■■□□□ 1.55
SF3A1-202ENST00000411423 PHAXQ9H814 394 aaKnown RBP24.73■■□□□ 1.55
SF3A1-202ENST00000411423 LMNB1P20700 586 aa24.72■■□□□ 1.55
SF3A1-202ENST00000411423 PARP10Q53GL7 1025 aa24.72■■□□□ 1.55
SF3A1-202ENST00000411423 NMRK2Q9NPI5 230 aa24.72■■□□□ 1.55
SF3A1-202ENST00000411423 NCBP3Q53F19 620 aaKnown RBP24.71■■□□□ 1.55
SF3A1-202ENST00000411423 PPP1R42Q7Z4L9 355 aa24.71■■□□□ 1.55
SF3A1-202ENST00000411423 PLBD2Q8NHP8 589 aa24.71■■□□□ 1.55
SF3A1-202ENST00000411423 TIAM2Q8IVF5 1701 aa24.7■■□□□ 1.54
SF3A1-202ENST00000411423 ANKRD13DQ6ZTN6 518 aa24.7■■□□□ 1.54
SF3A1-202ENST00000411423 UTP14AQ9BVJ6 771 aaKnown RBP24.7■■□□□ 1.54
SF3A1-202ENST00000411423 HYPKQ9NX55 129 aa24.7■■□□□ 1.54
SF3A1-202ENST00000411423 SNED1Q8TER0 1413 aa24.69■■□□□ 1.54
SF3A1-202ENST00000411423 IL16Q14005 1332 aa24.68■■□□□ 1.54
SF3A1-202ENST00000411423 HSP90AB3PQ58FF7 597 aa24.68■■□□□ 1.54
SF3A1-202ENST00000411423 ISCA1Q9BUE6 129 aa24.68■■□□□ 1.54
SF3A1-202ENST00000411423 SPINK5Q9NQ38 1064 aaPredicted RBP24.68■■□□□ 1.54
SF3A1-202ENST00000411423 LAMB2P55268 1798 aa24.67■■□□□ 1.54
SF3A1-202ENST00000411423 LTBP3Q9NS15 1303 aa24.67■■□□□ 1.54
SF3A1-202ENST00000411423 ATP5J2-PTCD1G3V325 749 aa24.67■■□□□ 1.54
SF3A1-202ENST00000411423 SLC10A5Q5PT55 438 aa24.67■■□□□ 1.54
SF3A1-202ENST00000411423 TCERG1O14776 1098 aaKnown RBP24.66■■□□□ 1.54
SF3A1-202ENST00000411423 HOXA10P31260 410 aaPredicted RBP24.66■■□□□ 1.54
SF3A1-202ENST00000411423 TAOK3Q9H2K8 898 aa24.66■■□□□ 1.54
SF3A1-202ENST00000411423 FANCIQ9NVI1 1328 aa24.65■■□□□ 1.54
SF3A1-202ENST00000411423 HCLS1P14317 486 aaPredicted RBP24.65■■□□□ 1.54
SF3A1-202ENST00000411423 DICER1Q9UPY3 1922 aaKnown RBP24.65■■□□□ 1.54
SF3A1-202ENST00000411423 ALDH1B1P30837 517 aa24.64■■□□□ 1.54
SF3A1-202ENST00000411423 CCDC93Q567U6 631 aa24.64■■□□□ 1.54
SF3A1-202ENST00000411423 DDX60Q8IY21 1712 aaKnown RBP24.64■■□□□ 1.53
SF3A1-202ENST00000411423 CCDC30Q5VVM6 783 aa24.63■■□□□ 1.53
SF3A1-202ENST00000411423 RPGRQ92834 1020 aaKnown RBP24.63■■□□□ 1.53
SF3A1-202ENST00000411423 TRMT112Q9UI30 125 aaKnown RBP24.63■■□□□ 1.53
SF3A1-202ENST00000411423 ZC3H4Q9UPT8 1303 aaKnown RBP24.62■■□□□ 1.53
SF3A1-202ENST00000411423 TWISTNBQ3B726 338 aaPredicted RBP24.62■■□□□ 1.53
SF3A1-202ENST00000411423 SOGA3Q5TF21 947 aa24.62■■□□□ 1.53
SF3A1-202ENST00000411423 WDR63Q8IWG1 891 aa24.62■■□□□ 1.53
SF3A1-202ENST00000411423 NLRP3Q96P20 1036 aa24.62■■□□□ 1.53
SF3A1-202ENST00000411423 RNF123Q5XPI4 1314 aa24.61■■□□□ 1.53
SF3A1-202ENST00000411423 SH3TC1Q8TE82 1336 aa24.61■■□□□ 1.53
SF3A1-202ENST00000411423 CRAMP1Q96RY5 1269 aa24.61■■□□□ 1.53
SF3A1-202ENST00000411423 RRAGCQ9HB90 399 aa24.61■■□□□ 1.53
SF3A1-202ENST00000411423 GLTPD2A6NH11 291 aa24.6■■□□□ 1.53
SF3A1-202ENST00000411423 FKBP4Q02790 459 aaKnown RBP eCLIP24.6■■□□□ 1.53
SF3A1-202ENST00000411423 G2E3Q7L622 706 aa24.6■■□□□ 1.53
SF3A1-202ENST00000411423 RIC3Q7Z5B4 369 aa24.6■■□□□ 1.53
SF3A1-202ENST00000411423 FAM89AQ96GI7 184 aa24.6■■□□□ 1.53
SF3A1-202ENST00000411423 RBM17Q96I25 401 aaKnown RBP24.6■■□□□ 1.53
SF3A1-202ENST00000411423 ZNF277Q9NRM2 450 aaPredicted RBP24.6■■□□□ 1.53
SF3A1-202ENST00000411423 ABCC4O15439 1325 aa24.6■■□□□ 1.53
SF3A1-202ENST00000411423 COL4A1P02462 1669 aa24.59■■□□□ 1.53
SF3A1-202ENST00000411423 GOLGA2Q08379 1002 aa24.59■■□□□ 1.53
SF3A1-202ENST00000411423 MYD88Q99836 296 aa24.59■■□□□ 1.53
SF3A1-202ENST00000411423 KDM2BQ8NHM5 1336 aa24.59■■□□□ 1.53
SF3A1-202ENST00000411423 TRIM28Q13263 835 aaKnown RBP24.58■■□□□ 1.53
SF3A1-202ENST00000411423 RTL5Q5HYW3 569 aaPredicted RBP24.58■■□□□ 1.53
SF3A1-202ENST00000411423 COL4A5P29400 1685 aa24.58■■□□□ 1.53
SF3A1-202ENST00000411423 ZNF521Q96K83 1311 aa24.58■■□□□ 1.52
SF3A1-202ENST00000411423 TAF1P21675 1872 aa24.58■■□□□ 1.52
SF3A1-202ENST00000411423 POTECB2RU33 542 aa24.57■■□□□ 1.52
SF3A1-202ENST00000411423 PPEF1O14829 653 aaPredicted RBP24.57■■□□□ 1.52
SF3A1-202ENST00000411423 EXOSC9Q06265 439 aaKnown RBP24.57■■□□□ 1.52
SF3A1-202ENST00000411423 VAMP4O75379 141 aa24.56■■□□□ 1.52
SF3A1-202ENST00000411423 RTKN2Q8IZC4 609 aa24.56■■□□□ 1.52
SF3A1-202ENST00000411423 JARID2Q92833 1246 aaPredicted RBP24.54■■□□□ 1.52
SF3A1-202ENST00000411423 METTL22Q9BUU2 404 aaPredicted RBP24.54■■□□□ 1.52
SF3A1-202ENST00000411423 MAP3K2Q9Y2U5 619 aa24.54■■□□□ 1.52
SF3A1-202ENST00000411423 WDR90Q96KV7 1748 aa24.53■■□□□ 1.52
SF3A1-202ENST00000411423 PI4KAP2A4QPH2 592 aa24.53■■□□□ 1.52
SF3A1-202ENST00000411423 TOMM70O94826 608 aa24.53■■□□□ 1.52
SF3A1-202ENST00000411423 SLC4A2P04920 1241 aa24.53■■□□□ 1.52
SF3A1-202ENST00000411423 IGKV5-2P06315 115 aa24.53■■□□□ 1.52
SF3A1-202ENST00000411423 PI4KAP1Q8N8J0 262 aa24.53■■□□□ 1.52
SF3A1-202ENST00000411423 PSMD1Q99460 953 aa24.53■■□□□ 1.52
SF3A1-202ENST00000411423 DDNO94850 711 aaPredicted RBP24.52■■□□□ 1.52
SF3A1-202ENST00000411423 IARSP41252 1262 aaKnown RBP24.52■■□□□ 1.52
SF3A1-202ENST00000411423 KSR2Q6VAB6 950 aa24.52■■□□□ 1.52
SF3A1-202ENST00000411423 STK31Q9BXU1 1019 aa24.52■■□□□ 1.52
SF3A1-202ENST00000411423 ZNF541Q9H0D2 1346 aa24.52■■□□□ 1.52
SF3A1-202ENST00000411423 IRS4O14654 1257 aaPredicted RBP24.51■■□□□ 1.51
SF3A1-202ENST00000411423 CC2D2BQ6DHV5 1058 aa24.51■■□□□ 1.51
SF3A1-202ENST00000411423 ZBTB38Q8NAP3 1195 aaPredicted RBP24.51■■□□□ 1.51
SF3A1-202ENST00000411423 ATP6V0A2Q9Y487 856 aa24.51■■□□□ 1.51
SF3A1-202ENST00000411423 CEP350Q5VT06 3117 aa24.51■■□□□ 1.51
SF3A1-202ENST00000411423 DDX58O95786 925 aaKnown RBP24.5■■□□□ 1.51
SF3A1-202ENST00000411423 GRAPQ13588 217 aa24.5■■□□□ 1.51
SF3A1-202ENST00000411423 SF3B3Q15393 1217 aaKnown RBP24.5■■□□□ 1.51
SF3A1-202ENST00000411423 CCDC191Q8NCU4 936 aa24.5■■□□□ 1.51
SF3A1-202ENST00000411423 GRAPLQ8TC17 118 aaPredicted RBP24.5■■□□□ 1.51
SF3A1-202ENST00000411423 CHMP4AQ9BY43 222 aa24.5■■□□□ 1.51
SF3A1-202ENST00000411423 CELF1Q92879 486 aaKnown RBP24.49■■□□□ 1.51
SF3A1-202ENST00000411423 PCCAP05165 728 aaPredicted RBP24.48■■□□□ 1.51
SF3A1-202ENST00000411423 HSPA6P17066 643 aa24.48■■□□□ 1.51
SF3A1-202ENST00000411423 FLIIQ13045 1269 aa24.48■■□□□ 1.51
SF3A1-202ENST00000411423 DDX46Q7L014 1031 aaKnown RBP24.48■■□□□ 1.51
SF3A1-202ENST00000411423 RBM46Q8TBY0 533 aaKnown RBP24.48■■□□□ 1.51
SF3A1-202ENST00000411423 CWC25Q9NXE8 425 aaPredicted RBP24.48■■□□□ 1.51
SF3A1-202ENST00000411423 BBOX1O75936 387 aa24.47■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms