RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 ARID5BQ14865 1188 aa25.01■■□□□ 1.59
CTCF-202ENST00000401394 ZNF589Q86UQ0 364 aaPredicted RBP25.01■■□□□ 1.59
CTCF-202ENST00000401394 ERCC4Q92889 916 aaPredicted RBP25.01■■□□□ 1.59
CTCF-202ENST00000401394 FBXW7Q969H0 707 aa25.01■■□□□ 1.59
CTCF-202ENST00000401394 ADCY9O60503 1353 aa25■■□□□ 1.59
CTCF-202ENST00000401394 GLRX3O76003 335 aaKnown RBP25■■□□□ 1.59
CTCF-202ENST00000401394 TYRO3Q06418 890 aa25■■□□□ 1.59
CTCF-202ENST00000401394 SIRT1Q96EB6 747 aa25■■□□□ 1.59
CTCF-202ENST00000401394 DRC7Q8IY82 874 aa25■■□□□ 1.59
CTCF-202ENST00000401394 ECHDC1Q9NTX5 307 aa25■■□□□ 1.59
CTCF-202ENST00000401394 PIP4K2AP48426 406 aaPredicted RBP24.99■■□□□ 1.59
CTCF-202ENST00000401394 HMGN5P82970 282 aaKnown RBP24.99■■□□□ 1.59
CTCF-202ENST00000401394 SLFNL1Q499Z3 407 aa24.99■■□□□ 1.59
CTCF-202ENST00000401394 VPS53Q5VIR6 699 aa24.99■■□□□ 1.59
CTCF-202ENST00000401394 PRIMPOLQ96LW4 560 aa24.99■■□□□ 1.59
CTCF-202ENST00000401394 FTOQ9C0B1 505 aaKnown RBP eCLIP24.99■■□□□ 1.59
CTCF-202ENST00000401394 CCDC171Q6TFL3 1326 aa24.99■■□□□ 1.59
CTCF-202ENST00000401394 NR1I2O75469 434 aa24.99■■□□□ 1.59
CTCF-202ENST00000401394 SASH1O94885 1247 aa24.98■■□□□ 1.59
CTCF-202ENST00000401394 CBX8Q9HC52 389 aa24.98■■□□□ 1.59
CTCF-202ENST00000401394 CCDC192P0DO97 292 aa24.98■■□□□ 1.59
CTCF-202ENST00000401394 NUP62CLQ9H1M0 184 aa24.98■■□□□ 1.59
CTCF-202ENST00000401394 FAM208AQ9UK61 1670 aaKnown RBP24.98■■□□□ 1.59
CTCF-202ENST00000401394 SLC27A2O14975 620 aa24.97■■□□□ 1.59
CTCF-202ENST00000401394 DNAJC25Q9H1X3 360 aa24.97■■□□□ 1.59
CTCF-202ENST00000401394 ATP6V1DQ9Y5K8 247 aa24.97■■□□□ 1.59
CTCF-202ENST00000401394 KAZALD1Q96I82 304 aa24.96■■□□□ 1.59
CTCF-202ENST00000401394 LETM1O95202 739 aaPredicted RBP24.96■■□□□ 1.59
CTCF-202ENST00000401394 CCDC129Q6ZRS4 1044 aa24.96■■□□□ 1.59
CTCF-202ENST00000401394 TNRQ92752 1358 aa24.96■■□□□ 1.59
CTCF-202ENST00000401394 BTBD11A6QL63 1104 aa24.96■■□□□ 1.59
CTCF-202ENST00000401394 MAP3K11Q16584 847 aa24.96■■□□□ 1.59
CTCF-202ENST00000401394 SUCLG2Q96I99 432 aa24.96■■□□□ 1.59
CTCF-202ENST00000401394 HDGFP51858 240 aaKnown RBP24.95■■□□□ 1.58
CTCF-202ENST00000401394 SMAP1Q8IYB5 467 aaPredicted RBP24.95■■□□□ 1.58
CTCF-202ENST00000401394 TNMDQ9H2S6 317 aa24.95■■□□□ 1.58
CTCF-202ENST00000401394 CCDC144BQ3MJ40 725 aa24.95■■□□□ 1.58
CTCF-202ENST00000401394 CCDC144CPQ8IYA2 1237 aa24.95■■□□□ 1.58
CTCF-202ENST00000401394 PGBD1Q96JS3 809 aa24.95■■□□□ 1.58
CTCF-202ENST00000401394 SEC62Q99442 399 aaKnown RBP24.95■■□□□ 1.58
CTCF-202ENST00000401394 TOB2Q14106 344 aaPredicted RBP24.94■■□□□ 1.58
CTCF-202ENST00000401394 TRIM5Q9C035 493 aa24.94■■□□□ 1.58
CTCF-202ENST00000401394 BICC1Q9H694 974 aaKnown RBP24.94■■□□□ 1.58
CTCF-202ENST00000401394 GTF2F1P35269 517 aaKnown RBP eCLIP24.94■■□□□ 1.58
CTCF-202ENST00000401394 KRT85P78386 507 aa24.94■■□□□ 1.58
CTCF-202ENST00000401394 PDCL2Q8N4E4 241 aa24.94■■□□□ 1.58
CTCF-202ENST00000401394 HTATSF1O43719 755 aaKnown RBP24.93■■□□□ 1.58
CTCF-202ENST00000401394 ZKSCAN1P17029 563 aaPredicted RBP24.93■■□□□ 1.58
CTCF-202ENST00000401394 FAM200AQ8TCP9 573 aa24.93■■□□□ 1.58
CTCF-202ENST00000401394 RGPD8O14715 1765 aaPredicted RBP24.93■■□□□ 1.58
CTCF-202ENST00000401394 ZNF592Q92610 1267 aa24.93■■□□□ 1.58
CTCF-202ENST00000401394 SPATA32Q96LK8 384 aa24.93■■□□□ 1.58
CTCF-202ENST00000401394 FSD1Q9BTV5 496 aa24.93■■□□□ 1.58
CTCF-202ENST00000401394 NOL12Q9UGY1 213 aaKnown RBP eCLIP24.93■■□□□ 1.58
CTCF-202ENST00000401394 USP16Q9Y5T5 823 aa24.93■■□□□ 1.58
CTCF-202ENST00000401394 V9GYY5 206 aaPredicted RBP24.93■■□□□ 1.58
CTCF-202ENST00000401394 MTERF4Q7Z6M4 381 aaKnown RBP24.92■■□□□ 1.58
CTCF-202ENST00000401394 TTC21AQ8NDW8 1320 aa24.92■■□□□ 1.58
CTCF-202ENST00000401394 GOLGA6L4A6NEF3 574 aa24.91■■□□□ 1.58
CTCF-202ENST00000401394 TEFQ10587 303 aa24.91■■□□□ 1.58
CTCF-202ENST00000401394 BICD2Q8TD16 824 aa24.91■■□□□ 1.58
CTCF-202ENST00000401394 RUFY2Q8WXA3 655 aa24.91■■□□□ 1.58
CTCF-202ENST00000401394 MAP4K1Q92918 833 aa24.91■■□□□ 1.58
CTCF-202ENST00000401394 SYTL4Q96C24 671 aaPredicted RBP24.91■■□□□ 1.58
CTCF-202ENST00000401394 USP27XA6NNY8 438 aa24.9■■□□□ 1.58
CTCF-202ENST00000401394 LEO1Q8WVC0 666 aaPredicted RBP24.9■■□□□ 1.58
CTCF-202ENST00000401394 ZNF530Q6P9A1 599 aaPredicted RBP24.9■■□□□ 1.58
CTCF-202ENST00000401394 CACTINQ8WUQ7 758 aaKnown RBP24.9■■□□□ 1.58
CTCF-202ENST00000401394 NWD1Q149M9 1564 aa24.9■■□□□ 1.58
CTCF-202ENST00000401394 TTC41PQ6P2S7 1318 aa24.9■■□□□ 1.58
CTCF-202ENST00000401394 A0A0G2JLW4 131 aa24.9■■□□□ 1.58
CTCF-202ENST00000401394 BLOC1S2Q6QNY1 142 aa24.9■■□□□ 1.58
CTCF-202ENST00000401394 EPHA10Q5JZY3 1008 aa24.89■■□□□ 1.58
CTCF-202ENST00000401394 NALCNQ8IZF0 1738 aa24.89■■□□□ 1.57
CTCF-202ENST00000401394 EVI5LQ96CN4 794 aa24.89■■□□□ 1.57
CTCF-202ENST00000401394 SH2B1Q9NRF2 756 aaPredicted RBP24.89■■□□□ 1.57
CTCF-202ENST00000401394 TAOK2Q9UL54 1235 aa24.88■■□□□ 1.57
CTCF-202ENST00000401394 KCNA6P17658 529 aa24.88■■□□□ 1.57
CTCF-202ENST00000401394 SLC39A6Q13433 755 aa24.88■■□□□ 1.57
CTCF-202ENST00000401394 COL15A1P39059 1388 aa24.88■■□□□ 1.57
CTCF-202ENST00000401394 MYL6BP14649 208 aa24.87■■□□□ 1.57
CTCF-202ENST00000401394 ZSCAN31Q96LW9 406 aaPredicted RBP24.87■■□□□ 1.57
CTCF-202ENST00000401394 DMTNQ08495 405 aa24.87■■□□□ 1.57
CTCF-202ENST00000401394 GUCY1B3Q02153 619 aa24.87■■□□□ 1.57
CTCF-202ENST00000401394 NCBP1Q09161 790 aaKnown RBP24.87■■□□□ 1.57
CTCF-202ENST00000401394 ZSCAN25Q6NSZ9 544 aa24.87■■□□□ 1.57
CTCF-202ENST00000401394 FMN2Q9NZ56 1722 aa24.86■■□□□ 1.57
CTCF-202ENST00000401394 ZNF165P49910 485 aa24.86■■□□□ 1.57
CTCF-202ENST00000401394 C11orf57Q6ZUT1 292 aaPredicted RBP24.86■■□□□ 1.57
CTCF-202ENST00000401394 BRF1Q92994 677 aa24.86■■□□□ 1.57
CTCF-202ENST00000401394 USP42Q9H9J4 1324 aaKnown RBP24.85■■□□□ 1.57
CTCF-202ENST00000401394 PIK3C2AO00443 1686 aa24.85■■□□□ 1.57
CTCF-202ENST00000401394 RPS6KB1P23443 525 aa24.85■■□□□ 1.57
CTCF-202ENST00000401394 ZNF75DP51815 510 aa24.85■■□□□ 1.57
CTCF-202ENST00000401394 NPHP1O15259 732 aa24.84■■□□□ 1.57
CTCF-202ENST00000401394 EPB41L2O43491 1005 aaKnown RBP24.84■■□□□ 1.57
CTCF-202ENST00000401394 TNNT1P13805 278 aa24.84■■□□□ 1.57
CTCF-202ENST00000401394 HSP90AB4PQ58FF6 505 aa24.84■■□□□ 1.57
CTCF-202ENST00000401394 TM6SF1Q9BZW5 370 aa24.84■■□□□ 1.57
CTCF-202ENST00000401394 CHAF1AQ13111 956 aaPredicted RBP24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms